Wall clock time and date at job start Tue Mar 31 2020 13:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38283 * 119.92291 * 2 1 4 4 C 1.38578 * 120.29464 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.93760 * 179.97438 * 4 3 2 6 6 C 1.38161 * 120.12950 * 0.02562 * 4 3 2 7 7 C 1.39574 * 119.83911 * 0.02562 * 6 4 3 8 8 C 1.47766 * 120.14513 * 179.97438 * 7 6 4 9 9 O 1.21565 * 120.00376 * 235.06446 * 8 7 6 10 10 N 1.34775 * 119.99964 * 55.07259 * 8 7 6 11 11 C 1.46508 * 119.99958 * 185.55868 * 10 8 7 12 12 C 1.50694 * 109.47113 * 89.99537 * 11 10 8 13 13 H 1.08004 * 120.00463 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00165 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00375 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99560 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46963 * 90.00240 * 16 14 12 18 18 H 1.48494 * 109.46974 * 209.99804 * 16 14 12 19 19 H 1.48493 * 109.47373 * 330.00094 * 16 14 12 20 20 C 1.46493 * 120.00052 * 5.55157 * 10 8 7 21 21 C 1.53005 * 109.47277 * 94.97179 * 20 10 8 22 22 C 1.47193 * 109.47124 * 180.02562 * 21 20 10 23 23 N 6.25995 * 122.78157 * 96.09137 * 2 1 3 24 24 C 1.38109 * 119.91766 * 180.02562 * 2 1 3 25 25 Cl 1.73597 * 120.06843 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.46930 * 89.99918 * 1 2 3 27 27 H 1.08995 * 109.47585 * 210.00340 * 1 2 3 28 28 H 1.09003 * 109.47005 * 330.00244 * 1 2 3 29 29 H 1.08007 * 119.84972 * 359.72579 * 3 2 1 30 30 H 1.07998 * 120.08575 * 180.02562 * 6 4 3 31 31 H 1.08995 * 109.46816 * 209.99505 * 11 10 8 32 32 H 1.09001 * 109.47002 * 329.99232 * 11 10 8 33 33 H 0.97000 * 119.99943 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.47240 * 214.97087 * 20 10 8 35 35 H 1.08999 * 109.47597 * 334.96957 * 20 10 8 36 36 H 1.08994 * 109.46732 * 300.00314 * 21 20 10 37 37 H 1.09005 * 109.46457 * 59.99851 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5825 1.2075 0.0005 5 9 4.2491 2.3826 0.0000 6 6 4.2838 0.0171 0.0005 7 6 3.5931 -1.1958 -0.0005 8 6 4.3363 -2.4730 -0.0011 9 8 4.1213 -3.3010 -0.8648 10 7 5.2524 -2.7200 0.9560 11 6 6.0753 -3.9302 0.8876 12 6 7.3338 -3.6387 0.1117 13 1 7.5037 -2.6509 -0.2907 14 6 8.2686 -4.6331 -0.0846 15 7 9.3671 -4.3787 -0.7613 16 14 7.9752 -6.3414 0.6119 17 1 7.2523 -7.1666 -0.3890 18 1 9.2791 -6.9774 0.9288 19 1 7.1610 -6.2383 1.8494 20 6 5.4256 -1.7782 2.0647 21 6 4.5877 -2.2376 3.2597 22 6 4.7612 -1.2910 4.3735 23 7 4.8964 -0.5585 5.2333 24 6 2.1958 -1.1970 -0.0005 25 17 1.3275 -2.7002 -0.0019 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6531 2.1317 -0.0045 30 1 5.3637 0.0249 0.0014 31 1 6.3362 -4.2496 1.8965 32 1 5.5162 -4.7220 0.3890 33 1 10.0249 -5.0781 -0.8990 34 1 6.4769 -1.7426 2.3504 35 1 5.1000 -0.7858 1.7528 36 1 3.5365 -2.2733 2.9740 37 1 4.9134 -3.2300 3.5716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193303018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:17 Heat of formation + Delta-G solvation = -48.266534 kcal Electronic energy + Delta-G solvation = -24914.305075 eV Core-core repulsion = 21017.681590 eV Total energy + Delta-G solvation = -3896.623485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.04668 -41.52935 -39.65950 -38.05386 -37.47540 -36.78308 -34.90035 -34.00728 -32.39605 -31.76816 -29.80175 -28.17560 -25.88464 -25.28939 -23.55438 -23.01355 -20.40911 -19.19685 -18.67402 -18.30493 -18.09106 -17.79179 -17.52441 -17.03306 -16.73823 -16.23402 -15.80599 -15.44398 -15.13071 -14.97793 -14.84420 -14.63005 -14.48549 -14.22919 -13.82055 -13.66319 -13.58856 -13.48675 -13.21932 -13.06904 -12.92510 -12.85095 -12.64184 -12.40767 -12.32133 -12.00476 -11.91805 -11.82326 -11.68075 -10.87963 -10.76775 -10.09611 -9.66971 -9.54393 -8.27673 -6.33010 -0.40094 -0.18061 1.01104 1.40024 1.44225 1.50807 1.52669 1.69121 1.78314 2.09382 2.22958 2.37142 2.91503 3.06586 3.09892 3.39201 3.52499 3.81621 3.90283 3.96150 4.03003 4.21203 4.43155 4.45724 4.54805 4.72242 4.75333 4.81063 4.83202 4.87483 4.94476 5.04267 5.16422 5.22713 5.49150 5.52757 5.56291 6.26544 6.47580 6.56023 6.70072 7.14690 7.33148 8.88912 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.004617 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.453562 B = 6062.731590 C = 6510.973780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.042 4.042 3 C -0.114 4.114 4 C 0.105 3.895 5 F -0.134 7.134 6 C -0.131 4.131 7 C -0.090 4.090 8 C 0.554 3.446 9 O -0.554 6.554 10 N -0.583 5.583 11 C 0.222 3.778 12 C -0.536 4.536 13 H 0.032 0.968 14 C 0.013 3.987 15 N -0.947 5.947 16 Si 0.941 3.059 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.226 1.226 20 C 0.102 3.898 21 C -0.037 4.037 22 C 0.243 3.757 23 N -0.482 5.482 24 C -0.023 4.023 25 Cl -0.045 7.045 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.183 0.817 30 H 0.144 0.856 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 9.268 5.855 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.043 4.043 3 C -0.133 4.133 4 C 0.085 3.915 5 F -0.112 7.112 6 C -0.151 4.151 7 C -0.094 4.094 8 C 0.341 3.659 9 O -0.432 6.432 10 N -0.312 5.312 11 C 0.101 3.899 12 C -0.574 4.574 13 H 0.050 0.950 14 C -0.185 4.185 15 N -0.587 5.587 16 Si 0.763 3.237 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.148 1.148 20 C -0.022 4.022 21 C -0.078 4.078 22 C -0.075 4.075 23 N -0.160 5.160 24 C -0.050 4.050 25 Cl -0.015 7.015 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.200 0.800 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.834 9.736 6.650 23.074 hybrid contribution 1.062 -1.020 -0.686 1.625 sum -18.771 8.715 5.964 21.538 Atomic orbital electron populations 1.21033 0.86660 1.05301 1.04589 1.19854 0.98772 0.89012 0.96622 1.21428 0.91132 1.00217 1.00478 1.17563 0.90903 0.80434 1.02570 1.91543 1.80944 1.44983 1.93780 1.21181 1.01450 0.90064 1.02367 1.19520 0.92684 0.93192 1.03973 1.18362 0.79601 0.86189 0.81723 1.90789 1.66567 1.47867 1.37961 1.47719 1.35673 1.24388 1.23447 1.19512 0.88547 0.83782 0.98096 1.21569 1.03431 0.97776 1.34656 0.94972 1.25799 0.94377 1.03308 0.95016 1.70050 1.10836 1.35448 1.42400 0.85822 0.78223 0.78904 0.80708 1.20349 1.20970 1.14809 1.21743 1.01905 0.93263 0.85317 1.19782 1.04382 0.96486 0.87169 1.29131 0.91698 0.93042 0.93586 1.81315 1.10379 1.11675 1.12655 1.20947 0.90237 0.88947 1.04909 1.98394 1.75511 1.31159 1.96467 0.88946 0.90380 0.87896 0.79952 0.83861 0.91674 0.95071 0.92471 0.88967 0.88578 0.85440 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.61 71.24 0.68 -0.53 16 2 C -0.04 -0.69 5.88 -19.88 -0.12 -0.81 16 3 C -0.11 -1.75 9.67 22.36 0.22 -1.53 16 4 C 0.10 2.20 7.29 22.33 0.16 2.36 16 5 F -0.13 -2.97 17.26 44.97 0.78 -2.19 16 6 C -0.13 -3.36 7.46 22.57 0.17 -3.19 16 7 C -0.09 -2.55 4.90 -20.07 -0.10 -2.64 16 8 C 0.55 20.39 6.53 86.76 0.57 20.96 16 9 O -0.55 -25.20 15.77 -3.92 -0.06 -25.26 16 10 N -0.58 -20.42 2.46 -829.65 -2.04 -22.46 16 11 C 0.22 9.43 4.29 85.63 0.37 9.80 16 12 C -0.54 -29.04 9.94 25.60 0.25 -28.78 16 13 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 14 C 0.01 0.73 5.47 84.66 0.46 1.19 16 15 N -0.95 -57.91 13.96 21.45 0.30 -57.61 16 16 Si 0.94 41.50 27.47 68.60 1.88 43.38 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.23 -8.47 6.54 99.48 0.65 -7.82 16 20 C 0.10 2.62 5.19 86.38 0.45 3.07 16 21 C -0.04 -0.70 6.02 28.79 0.17 -0.52 16 22 C 0.24 5.41 15.44 89.42 1.38 6.79 16 23 N -0.48 -13.47 18.55 20.02 0.37 -13.09 16 24 C -0.02 -0.53 6.34 22.60 0.14 -0.39 16 25 Cl -0.04 -1.10 25.73 -2.72 -0.07 -1.17 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.86 6.90 -2.39 -0.02 0.84 16 28 H 0.10 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.14 3.91 7.58 -2.91 -0.02 3.89 16 31 H 0.07 2.40 7.13 -2.39 -0.02 2.38 16 32 H 0.03 1.43 6.78 -2.39 -0.02 1.41 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.09 2.51 8.11 -2.38 -0.02 2.49 16 35 H 0.10 2.25 4.42 -2.39 -0.01 2.24 16 36 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -74.39 343.83 7.04 -67.35 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 1.07 Total: 5.29 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 4.81 Total: 5.77 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -1.37 Total: -93.17 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.26 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.88 Total: 43.38 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.17 kcal Total: -74.39 7.04 -67.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193303018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.085 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds