Wall clock time and date at job start Tue Mar 31 2020 14:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 119.99730 * 2 1 4 4 H 1.48499 * 109.46923 * 174.42040 * 3 2 1 5 5 H 1.48500 * 109.47282 * 294.41709 * 3 2 1 6 6 H 1.48500 * 109.47396 * 54.42000 * 3 2 1 7 7 C 1.37874 * 119.99739 * 179.97438 * 2 1 3 8 8 C 1.51297 * 120.84758 * 346.12509 * 7 2 1 9 9 C 1.53228 * 108.52488 * 128.63355 * 8 7 2 10 10 C 1.52961 * 109.41081 * 54.62220 * 9 8 7 11 11 H 1.09003 * 109.41558 * 56.50206 * 10 9 8 12 12 N 1.46506 * 109.41417 * 176.35771 * 10 9 8 13 13 C 1.34771 * 120.00222 * 205.00357 * 12 10 9 14 14 S 1.71205 * 120.00073 * 359.97438 * 13 12 10 15 15 N 1.34777 * 120.00263 * 180.02562 * 13 12 10 16 16 C 1.39935 * 120.00452 * 185.69953 * 15 13 12 17 17 C 1.38873 * 120.05812 * 221.08388 * 16 15 13 18 18 C 1.38117 * 119.93932 * 179.67842 * 17 16 15 19 19 C 1.38387 * 120.05727 * 0.60885 * 18 17 16 20 20 Cl 1.73599 * 119.94144 * 179.70456 * 19 18 17 21 21 C 1.38386 * 120.11704 * 359.68587 * 19 18 17 22 22 C 1.38108 * 120.05610 * 359.97438 * 21 19 18 23 23 C 1.52957 * 109.82178 * 296.39754 * 10 9 8 24 24 C 1.51270 * 120.84527 * 166.09958 * 7 2 1 25 25 H 0.97002 * 120.00456 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.64159 * 8.92193 * 8 7 2 27 27 H 1.09001 * 109.62316 * 248.34243 * 8 7 2 28 28 H 1.08996 * 109.48592 * 294.64392 * 9 8 7 29 29 H 1.08998 * 109.48664 * 174.60462 * 9 8 7 30 30 H 0.96999 * 119.99420 * 25.00227 * 12 10 9 31 31 H 0.97003 * 119.99697 * 5.69671 * 15 13 12 32 32 H 1.07997 * 120.03049 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.96809 * 180.29290 * 18 17 16 34 34 H 1.07992 * 119.97219 * 180.02562 * 21 19 18 35 35 H 1.08006 * 120.02793 * 180.02562 * 22 21 19 36 36 H 1.08996 * 109.48410 * 183.58099 * 23 10 9 37 37 H 1.09006 * 109.47828 * 303.60559 * 23 10 9 38 38 H 1.09007 * 109.62410 * 111.65837 * 24 7 2 39 39 H 1.08992 * 109.62810 * 351.08658 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7033 1.3497 0.1361 5 1 1.9953 2.3358 -1.2748 6 1 1.7911 2.4537 1.1387 7 6 2.0045 -1.1941 0.0005 8 6 1.3002 -2.4962 0.3126 9 6 1.6183 -3.5006 -0.8001 10 6 3.1350 -3.6252 -0.9540 11 1 3.5739 -3.9122 0.0016 12 7 3.4403 -4.6487 -1.9569 13 6 4.6227 -5.2945 -1.9224 14 16 5.7684 -4.9185 -0.7071 15 7 4.9037 -6.2357 -2.8453 16 6 6.0779 -6.9896 -2.7409 17 6 6.8248 -7.2747 -3.8764 18 6 7.9869 -8.0134 -3.7696 19 6 8.4006 -8.4800 -2.5342 20 17 9.8577 -9.4147 -2.4045 21 6 7.6549 -8.2024 -1.4019 22 6 6.4958 -7.4583 -1.5022 23 6 3.7228 -2.2858 -1.4014 24 6 3.4841 -1.2356 -0.3114 25 1 -0.4851 0.8400 -0.0004 26 1 0.2241 -2.3290 0.3581 27 1 1.6540 -2.8839 1.2679 28 1 1.1852 -3.1533 -1.7380 29 1 1.1979 -4.4729 -0.5434 30 1 2.7913 -4.8614 -2.6457 31 1 4.2918 -6.3904 -3.5820 32 1 6.4997 -6.9151 -4.8415 33 1 8.5706 -8.2314 -4.6517 34 1 7.9801 -8.5673 -0.4389 35 1 5.9144 -7.2416 -0.6181 36 1 4.7938 -2.3972 -1.5707 37 1 3.2399 -1.9674 -2.3253 38 1 4.0400 -1.5067 0.5862 39 1 3.8109 -0.2584 -0.6667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197344056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:47 Heat of formation + Delta-G solvation = 13.046606 kcal Electronic energy + Delta-G solvation = -22052.814249 eV Core-core repulsion = 18725.062678 eV Total energy + Delta-G solvation = -3327.751571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26836 -39.94768 -38.25427 -37.23247 -35.66080 -33.60350 -32.11140 -31.54612 -30.54813 -28.85594 -25.71020 -24.19809 -23.66376 -23.38165 -22.97199 -21.35566 -19.66037 -19.21359 -17.97010 -17.71100 -17.06986 -16.53911 -16.39372 -16.29081 -15.44599 -15.19878 -14.96027 -14.61152 -14.49523 -14.40955 -14.07537 -13.90833 -13.55031 -13.20264 -12.95891 -12.79990 -12.61077 -12.47162 -12.45208 -12.22995 -11.89185 -11.81433 -11.78882 -11.44880 -11.03729 -10.79222 -10.56414 -10.36152 -10.08112 -9.34591 -8.94776 -8.25075 -8.19731 -6.07714 -0.23044 0.37121 0.51499 0.85903 1.17863 1.35844 1.43344 1.45458 1.53625 2.41990 2.48650 2.66441 3.09448 3.82418 3.94786 3.96261 4.12081 4.23230 4.31592 4.41768 4.51019 4.69494 4.73395 4.87925 4.91909 4.96190 5.05384 5.07843 5.17767 5.21860 5.27884 5.31036 5.37675 5.55833 5.58764 5.66092 5.71325 5.75189 5.83923 6.02105 6.33937 6.37442 6.95176 7.48286 8.90928 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.002512 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.927378 B =11144.869040 C =11415.963175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.031 3.969 3 Si 0.926 3.074 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.288 1.288 7 C -0.501 4.501 8 C 0.009 3.991 9 C -0.100 4.100 10 C 0.167 3.833 11 H 0.089 0.911 12 N -0.647 5.647 13 C 0.578 3.422 14 S -0.706 6.706 15 N -0.616 5.616 16 C 0.126 3.874 17 C -0.105 4.105 18 C -0.104 4.104 19 C -0.040 4.040 20 Cl -0.072 7.072 21 C -0.112 4.112 22 C -0.074 4.074 23 C -0.100 4.100 24 C -0.013 4.013 25 H 0.263 0.737 26 H 0.035 0.965 27 H 0.002 0.998 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.416 0.584 31 H 0.429 0.571 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.012 0.988 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.029 -18.808 -12.283 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.753 3.247 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.215 1.215 7 C -0.520 4.520 8 C -0.029 4.029 9 C -0.139 4.139 10 C 0.063 3.937 11 H 0.107 0.893 12 N -0.273 5.273 13 C 0.215 3.785 14 S -0.577 6.577 15 N -0.244 5.244 16 C 0.033 3.967 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.068 4.068 20 Cl -0.043 7.043 21 C -0.132 4.132 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.051 4.051 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.020 0.980 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.255 0.745 31 H 0.271 0.729 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.673 -18.405 -11.367 24.581 hybrid contribution -0.914 0.907 -0.691 1.462 sum 10.759 -17.497 -12.058 23.818 Atomic orbital electron populations 1.69982 1.07442 1.27446 1.51131 1.25458 0.95152 1.01365 0.94808 0.86006 0.80553 0.80632 0.77535 1.17619 1.20648 1.21494 1.20543 0.93098 0.92662 1.45665 1.19301 0.97656 0.92885 0.93027 1.21722 0.92252 0.99017 1.00902 1.21233 0.96345 0.85506 0.90617 0.89339 1.45317 1.13450 1.36665 1.31848 1.21851 0.87527 0.80910 0.88184 1.93697 1.44580 1.81769 1.37641 1.42007 1.22970 1.33088 1.26364 1.17595 0.88360 0.95491 0.95296 1.21091 0.93542 0.99599 0.98311 1.21048 0.96572 0.98087 0.96691 1.21106 0.90418 0.99570 0.95666 1.98368 1.35792 1.71639 1.98479 1.20942 0.94698 0.99134 0.98452 1.21301 0.97377 0.93334 0.97641 1.21697 0.98736 0.94451 0.99066 1.19698 0.95196 0.95408 0.94795 0.92764 0.94613 0.97961 0.92340 0.91987 0.74454 0.72944 0.81884 0.82248 0.84271 0.84956 0.93135 0.92952 0.96989 0.94947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.76 12.79 21.45 0.27 -51.49 16 2 C 0.03 1.67 5.43 84.65 0.46 2.13 16 3 Si 0.93 42.36 27.66 68.60 1.90 44.26 16 4 H -0.25 -11.14 6.07 99.48 0.60 -10.53 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 7 C -0.50 -25.29 5.46 -16.16 -0.09 -25.37 16 8 C 0.01 0.44 5.99 30.11 0.18 0.62 16 9 C -0.10 -3.60 5.40 30.66 0.17 -3.44 16 10 C 0.17 5.65 2.12 44.96 0.10 5.75 16 11 H 0.09 3.50 6.82 -2.39 -0.02 3.48 16 12 N -0.65 -15.64 5.08 -329.68 -1.67 -17.32 16 13 C 0.58 14.78 7.71 179.06 1.38 16.16 16 14 S -0.71 -25.67 23.82 -56.49 -1.35 -27.02 16 15 N -0.62 -10.50 5.33 -189.96 -1.01 -11.51 16 16 C 0.13 2.40 5.92 38.15 0.23 2.63 16 17 C -0.10 -1.46 9.97 22.39 0.22 -1.23 16 18 C -0.10 -1.51 9.82 22.28 0.22 -1.29 16 19 C -0.04 -0.73 6.32 22.34 0.14 -0.59 16 20 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.29 16 21 C -0.11 -2.30 9.82 22.27 0.22 -2.08 16 22 C -0.07 -1.70 7.85 22.39 0.18 -1.52 16 23 C -0.10 -3.84 5.43 30.66 0.17 -3.67 16 24 C -0.01 -0.58 5.48 30.11 0.17 -0.41 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.04 1.84 7.09 -2.39 -0.02 1.83 16 27 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.42 6.80 8.62 -92.71 -0.80 6.00 16 31 H 0.43 3.65 8.84 -92.71 -0.82 2.83 16 32 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.13 3.63 6.22 -5.19 -0.03 3.60 16 36 H 0.05 1.96 7.47 -2.39 -0.02 1.94 16 37 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.03 1.47 4.92 -2.39 -0.01 1.46 16 Total: -1.00 -66.48 339.83 1.16 -65.32 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -0.63 Total: 11.36 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 3.73 Total: -12.32 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.41 Total: -80.31 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.90 Total: 44.26 kcal Atomic # 16 Polarization: -25.67 SS G_CDS: -1.35 Total: -27.02 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -66.48 1.16 -65.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197344056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.369 kcal (2) G-P(sol) polarization free energy of solvation -66.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds