Wall clock time and date at job start Tue Mar 31 2020 14:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48506 * 109.46767 * 173.43191 * 3 2 1 5 5 H 1.48498 * 109.47367 * 293.42938 * 3 2 1 6 6 H 1.48495 * 109.47230 * 53.43428 * 3 2 1 7 7 C 1.37874 * 119.99876 * 180.02562 * 2 1 3 8 8 C 1.51274 * 120.85051 * 346.76450 * 7 2 1 9 9 C 1.53231 * 108.53756 * 231.32993 * 8 7 2 10 10 C 1.52951 * 109.41643 * 305.37825 * 9 8 7 11 11 H 1.09006 * 109.40031 * 303.47782 * 10 9 8 12 12 N 1.46502 * 109.42575 * 183.69416 * 10 9 8 13 13 C 1.34776 * 120.00032 * 84.63638 * 12 10 9 14 14 S 1.71204 * 120.00104 * 0.02562 * 13 12 10 15 15 N 1.34778 * 120.00025 * 180.02562 * 13 12 10 16 16 C 1.39931 * 120.00144 * 185.63973 * 15 13 12 17 17 C 1.38873 * 120.06236 * 219.75759 * 16 15 13 18 18 C 1.38114 * 119.94261 * 179.70195 * 17 16 15 19 19 C 1.38382 * 120.05554 * 0.59417 * 18 17 16 20 20 Cl 1.73600 * 119.93836 * 179.70013 * 19 18 17 21 21 C 1.38385 * 120.11846 * 359.68048 * 19 18 17 22 22 C 1.38103 * 120.05881 * 0.02562 * 21 19 18 23 23 C 1.52959 * 109.81826 * 63.58046 * 10 9 8 24 24 C 1.51266 * 120.85009 * 166.75051 * 7 2 1 25 25 H 0.97003 * 119.99387 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.62108 * 351.04894 * 8 7 2 27 27 H 1.09003 * 109.62191 * 111.61110 * 8 7 2 28 28 H 1.09003 * 109.48018 * 65.35607 * 9 8 7 29 29 H 1.09002 * 109.47646 * 185.39438 * 9 8 7 30 30 H 0.96996 * 119.99659 * 264.64443 * 12 10 9 31 31 H 0.97003 * 119.99338 * 5.64705 * 15 13 12 32 32 H 1.07998 * 120.02462 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.96842 * 180.29570 * 18 17 16 34 34 H 1.08002 * 119.96752 * 179.97438 * 21 19 18 35 35 H 1.08004 * 120.03029 * 180.02562 * 22 21 19 36 36 H 1.09004 * 109.47914 * 176.44052 * 23 10 9 37 37 H 1.08991 * 109.48543 * 56.40611 * 23 10 9 38 38 H 1.09001 * 109.63184 * 8.95308 * 24 7 2 39 39 H 1.09010 * 109.78224 * 248.47714 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7013 1.3509 0.1602 5 1 2.0146 2.3248 -1.2846 6 1 1.7744 2.4635 1.1245 7 6 2.0045 -1.1940 -0.0005 8 6 1.2975 -2.4981 0.2962 9 6 2.0768 -3.2370 1.3892 10 6 3.5350 -3.3952 0.9554 11 1 3.5734 -3.9128 -0.0031 12 7 4.2598 -4.1781 1.9594 13 6 4.2278 -5.5247 1.9157 14 16 3.3407 -6.3205 0.6866 15 7 4.8942 -6.2450 2.8397 16 6 4.9595 -7.6382 2.7272 17 6 4.8506 -8.4335 3.8604 18 6 4.9092 -9.8086 3.7458 19 6 5.0885 -10.3936 2.5046 20 17 5.1695 -12.1221 2.3651 21 6 5.2030 -9.6033 1.3745 22 6 5.1391 -8.2280 1.4828 23 6 4.1869 -2.0185 0.8164 24 6 3.4871 -1.2337 -0.2982 25 1 -0.4849 0.8401 -0.0004 26 1 0.2843 -2.2945 0.6428 27 1 1.2630 -3.1092 -0.6057 28 1 2.0334 -2.6653 2.3163 29 1 1.6359 -4.2211 1.5478 30 1 4.7626 -3.7272 2.6557 31 1 5.3285 -5.7974 3.5827 32 1 4.7159 -7.9772 4.8300 33 1 4.8198 -10.4277 4.6263 34 1 5.3433 -10.0624 0.4070 35 1 5.2280 -7.6116 0.6004 36 1 5.2416 -2.1391 0.5689 37 1 4.0939 -1.4755 1.7568 38 1 3.8808 -0.2179 -0.3335 39 1 3.6581 -1.7260 -1.2556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197344061.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:50 Heat of formation + Delta-G solvation = 30.448144 kcal Electronic energy + Delta-G solvation = -22052.040308 eV Core-core repulsion = 18725.043324 eV Total energy + Delta-G solvation = -3326.996984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32741 -38.75810 -37.13553 -36.25469 -34.27686 -31.90372 -31.32826 -29.79066 -29.50108 -27.33529 -24.51697 -23.08402 -22.54173 -21.96143 -21.47429 -19.82933 -18.61596 -18.10645 -16.87034 -16.17835 -15.96375 -15.57379 -15.03180 -14.54134 -14.45523 -14.18465 -13.73712 -13.61439 -13.25594 -12.94809 -12.48356 -12.38299 -12.30420 -11.87191 -11.75973 -11.62304 -11.17561 -11.03580 -11.02339 -10.92895 -10.79616 -10.40972 -10.04588 -9.78945 -9.50158 -9.28113 -9.04225 -8.78948 -8.44497 -8.33298 -7.61653 -6.89257 -6.17366 -4.06272 0.70146 1.15098 1.55967 1.93267 2.04530 2.58259 3.19947 3.27595 3.30641 3.45087 3.50801 4.31459 4.55576 4.68133 5.03267 5.06966 5.10003 5.25250 5.39787 5.63329 5.66779 5.76193 5.94803 5.96645 6.05954 6.14013 6.29442 6.34100 6.42921 6.51649 6.63520 6.73396 6.85459 6.96592 7.00272 7.16586 7.30606 7.34087 7.57517 7.75810 7.82978 8.32834 8.90804 9.47909 10.91934 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.038460 B = 0.002455 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.845980 B =11403.974891 C =11603.353703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.493 4.493 8 C 0.018 3.982 9 C -0.113 4.113 10 C 0.148 3.852 11 H 0.110 0.890 12 N -0.661 5.661 13 C 0.551 3.449 14 S -0.615 6.615 15 N -0.645 5.645 16 C 0.145 3.855 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.036 4.036 20 Cl -0.077 7.077 21 C -0.102 4.102 22 C -0.061 4.061 23 C -0.115 4.115 24 C -0.017 4.017 25 H 0.264 0.736 26 H 0.055 0.945 27 H 0.013 0.987 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.392 0.608 31 H 0.405 0.595 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.996 -15.132 9.520 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.125 4.125 3 Si 0.705 3.295 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.213 1.213 7 C -0.512 4.512 8 C -0.020 4.020 9 C -0.152 4.152 10 C 0.046 3.954 11 H 0.128 0.872 12 N -0.285 5.285 13 C 0.193 3.807 14 S -0.484 6.484 15 N -0.273 5.273 16 C 0.051 3.949 17 C -0.140 4.140 18 C -0.127 4.127 19 C -0.063 4.063 20 Cl -0.048 7.048 21 C -0.123 4.123 22 C -0.084 4.084 23 C -0.154 4.154 24 C -0.055 4.055 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.228 0.772 31 H 0.243 0.757 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.117 -15.528 8.528 22.043 hybrid contribution 1.154 1.695 1.572 2.584 sum 14.271 -13.832 10.101 22.294 Atomic orbital electron populations 1.69926 1.06263 1.26923 1.48559 1.24850 0.94583 0.98517 0.94546 0.86779 0.80861 0.83939 0.77938 1.18357 1.20787 1.21297 1.20022 0.91428 0.92339 1.47433 1.19277 0.96731 0.93191 0.92787 1.21978 0.92985 0.99471 1.00764 1.21810 0.92323 0.90545 0.90690 0.87193 1.45911 1.48445 1.02629 1.31500 1.22482 0.83782 0.85433 0.89045 1.93474 1.52061 1.70032 1.32797 1.42215 1.52836 1.05603 1.26622 1.17436 1.01924 0.80669 0.94891 1.20777 1.02593 0.92883 0.97790 1.20691 1.01658 0.94020 0.96297 1.20957 1.05672 0.84371 0.95302 1.98364 1.96811 1.11231 1.98383 1.20882 1.00949 0.92680 0.97785 1.21495 0.94753 0.94464 0.97737 1.21954 0.97083 0.94271 1.02061 1.19858 0.95934 0.96280 0.93405 0.92579 0.92677 0.96869 0.93785 0.93216 0.77209 0.75739 0.85076 0.84749 0.84540 0.82601 0.94371 0.92684 0.93789 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 12.86 55.43 0.71 -24.09 16 2 C 0.08 2.07 5.44 -17.82 -0.10 1.97 16 3 Si 0.88 19.84 27.89 -169.99 -4.74 15.09 16 4 H -0.26 -5.49 5.69 56.52 0.32 -5.17 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.49 -12.40 5.46 -98.92 -0.54 -12.94 16 8 C 0.02 0.45 5.92 -27.48 -0.16 0.28 16 9 C -0.11 -2.31 5.44 -26.64 -0.14 -2.45 16 10 C 0.15 2.60 2.12 -67.98 -0.14 2.46 16 11 H 0.11 2.19 6.82 -51.93 -0.35 1.84 16 12 N -0.66 -8.83 5.08 -55.56 -0.28 -9.11 16 13 C 0.55 7.67 7.71 -86.92 -0.67 7.00 16 14 S -0.61 -11.31 23.70 -107.50 -2.55 -13.86 16 15 N -0.65 -6.55 5.33 -11.39 -0.06 -6.61 16 16 C 0.15 1.57 5.96 -83.69 -0.50 1.07 16 17 C -0.12 -1.07 9.97 -39.39 -0.39 -1.46 16 18 C -0.11 -0.96 9.82 -39.57 -0.39 -1.35 16 19 C -0.04 -0.36 6.32 -39.47 -0.25 -0.61 16 20 Cl -0.08 -0.72 28.95 -51.86 -1.50 -2.22 16 21 C -0.10 -1.10 9.82 -39.58 -0.39 -1.49 16 22 C -0.06 -0.73 7.85 -39.39 -0.31 -1.04 16 23 C -0.11 -2.03 5.40 -26.63 -0.14 -2.17 16 24 C -0.02 -0.36 5.66 -27.48 -0.16 -0.52 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.05 1.49 7.23 -51.93 -0.38 1.12 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 1.04 7.47 -51.93 -0.39 0.66 16 30 H 0.39 3.90 8.62 -40.82 -0.35 3.54 16 31 H 0.40 2.64 8.84 -40.82 -0.36 2.28 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.16 2.11 6.07 -45.00 -0.27 1.84 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.94 4.43 -51.93 -0.23 0.71 16 39 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -30.08 339.28 -12.52 -42.61 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.93 Total: 4.32 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -4.29 Total: -11.24 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.37 Total: -39.81 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.74 Total: 15.09 kcal Atomic # 16 Polarization: -11.31 SS G_CDS: -2.55 Total: -13.86 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.08 -12.52 -42.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197344061.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.056 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds