Wall clock time and date at job start Tue Mar 31 2020 14:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99634 * 2 1 4 4 H 1.48506 * 109.46708 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47215 * 299.99682 * 3 2 1 6 6 H 1.48491 * 109.46951 * 60.00263 * 3 2 1 7 7 C 1.37867 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00326 * 184.67249 * 7 2 1 9 9 C 1.50708 * 119.99892 * 4.67583 * 7 2 1 10 10 N 1.46494 * 110.66935 * 306.56392 * 9 7 2 11 11 C 1.34775 * 120.00346 * 302.04604 * 10 9 7 12 12 S 1.71198 * 119.99842 * 5.07904 * 11 10 9 13 13 N 1.34778 * 120.00148 * 185.08168 * 11 10 9 14 14 C 1.39949 * 120.00041 * 175.76129 * 13 11 10 15 15 C 1.38869 * 120.05755 * 225.14993 * 14 13 11 16 16 C 1.38108 * 119.94098 * 179.76702 * 15 14 13 17 17 C 1.38390 * 120.05665 * 0.51406 * 16 15 14 18 18 Cl 1.73598 * 119.94214 * 179.72280 * 17 16 15 19 19 C 1.38381 * 120.11604 * 359.73964 * 17 16 15 20 20 C 1.38115 * 120.06039 * 0.02562 * 19 17 16 21 21 C 1.54887 * 110.91348 * 69.91248 * 9 7 2 22 22 C 1.54268 * 104.19458 * 156.33449 * 21 9 7 23 23 C 1.53875 * 106.59684 * 336.38401 * 22 21 9 24 24 C 1.54270 * 106.59785 * 0.02562 * 23 22 21 25 25 H 0.97001 * 120.00468 * 5.00367 * 1 2 3 26 26 H 0.97003 * 119.99656 * 122.04482 * 10 9 7 27 27 H 0.97004 * 119.99828 * 355.76656 * 13 11 10 28 28 H 1.07996 * 120.03356 * 0.02562 * 15 14 13 29 29 H 1.07996 * 119.97464 * 180.23248 * 16 15 14 30 30 H 1.07999 * 119.97414 * 179.97438 * 19 17 16 31 31 H 1.07995 * 120.03294 * 179.97438 * 20 19 17 32 32 H 1.08995 * 110.48997 * 37.65333 * 21 9 7 33 33 H 1.09002 * 110.48133 * 275.00522 * 21 9 7 34 34 H 1.09002 * 110.02763 * 217.10511 * 22 21 9 35 35 H 1.08991 * 110.03501 * 95.67313 * 22 21 9 36 36 H 1.09000 * 110.03349 * 119.28756 * 23 22 21 37 37 H 1.09001 * 110.03545 * 240.66722 * 23 22 21 38 38 H 1.08997 * 110.48596 * 142.28970 * 24 23 22 39 39 H 1.09006 * 110.48195 * 264.92378 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0819 -1.1955 0.0757 9 6 1.2549 -2.4969 -0.1075 10 7 0.2139 -2.5804 0.9199 11 6 0.5437 -2.4821 2.2230 12 16 2.1575 -2.1301 2.6733 13 7 -0.3969 -2.6610 3.1715 14 6 -0.0381 -2.6471 4.5242 15 6 -0.5352 -3.6161 5.3857 16 6 -0.1758 -3.6030 6.7191 17 6 0.6706 -2.6189 7.1991 18 17 1.1148 -2.6009 8.8772 19 6 1.1632 -1.6490 6.3438 20 6 0.8108 -1.6604 5.0085 21 6 0.6461 -2.6701 -1.5212 22 6 0.4757 -4.1955 -1.6754 23 6 1.4803 -4.8498 -0.7108 24 6 2.2257 -3.6990 -0.0036 25 1 -0.4851 0.8368 -0.0733 26 1 -0.7127 -2.7065 0.6623 27 1 -1.3225 -2.7995 2.9167 28 1 -1.1991 -4.3819 5.0125 29 1 -0.5591 -4.3585 7.3888 30 1 1.8233 -0.8818 6.7210 31 1 1.1951 -0.9030 4.3415 32 1 1.3268 -2.2836 -2.2797 33 1 -0.3204 -2.1700 -1.5841 34 1 0.6942 -4.4938 -2.7008 35 1 -0.5406 -4.4865 -1.4100 36 1 0.9516 -5.4582 0.0229 37 1 2.1858 -5.4663 -1.2679 38 1 2.4122 -3.9501 1.0405 39 1 3.1617 -3.4784 -0.5169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197362504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:59 Heat of formation + Delta-G solvation = 38.302229 kcal Electronic energy + Delta-G solvation = -23154.405243 eV Core-core repulsion = 19827.748838 eV Total energy + Delta-G solvation = -3326.656405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.70750 -38.54978 -36.84482 -35.86221 -33.35411 -32.16212 -30.87748 -29.08244 -27.96028 -27.54951 -24.31536 -23.58557 -22.49443 -21.66924 -19.74747 -19.45007 -17.90297 -17.42663 -16.78975 -16.20324 -15.18157 -15.09484 -14.68343 -14.59723 -14.08522 -13.87391 -13.50373 -13.29199 -13.20676 -12.88925 -12.29761 -12.00431 -11.87446 -11.39970 -11.29812 -11.15905 -10.79203 -10.73125 -10.66607 -10.53121 -10.44470 -10.25557 -10.12217 -9.83251 -9.71166 -9.37664 -8.87294 -8.82653 -8.53442 -7.76306 -6.62026 -6.10596 -6.01131 -3.93900 1.25695 1.58858 2.29492 2.49273 2.96189 3.29752 3.41196 3.48424 3.52510 3.91777 4.42799 4.47633 4.98396 5.08823 5.23652 5.44088 5.48425 5.52063 5.55360 5.62901 5.75479 6.11111 6.18835 6.23539 6.24989 6.41304 6.44984 6.50029 6.53234 6.57858 6.64409 6.71396 6.92143 7.01393 7.03847 7.14057 7.28615 7.39621 7.85620 7.92781 8.11417 8.41830 8.91585 9.53123 10.94417 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.004293 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.994173 B = 6520.822377 C = 7616.259575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.450 4.450 8 H 0.072 0.928 9 C 0.291 3.709 10 N -0.604 5.604 11 C 0.560 3.440 12 S -0.628 6.628 13 N -0.660 5.660 14 C 0.157 3.843 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.038 4.038 18 Cl -0.087 7.087 19 C -0.109 4.109 20 C -0.055 4.055 21 C -0.108 4.108 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.125 4.125 25 H 0.257 0.743 26 H 0.378 0.622 27 H 0.398 0.602 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.161 0.839 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 -7.559 6.621 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.490 4.490 8 H 0.090 0.910 9 C 0.209 3.791 10 N -0.223 5.223 11 C 0.200 3.800 12 S -0.492 6.492 13 N -0.289 5.289 14 C 0.061 3.939 15 C -0.146 4.146 16 C -0.135 4.135 17 C -0.066 4.066 18 Cl -0.059 7.059 19 C -0.131 4.131 20 C -0.080 4.080 21 C -0.147 4.147 22 C -0.168 4.168 23 C -0.165 4.165 24 C -0.165 4.165 25 H 0.067 0.933 26 H 0.213 0.787 27 H 0.235 0.765 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.179 0.821 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.996 -7.218 6.826 10.708 hybrid contribution -1.436 0.682 -0.375 1.633 sum -5.432 -6.537 6.451 10.670 Atomic orbital electron populations 1.69896 1.05952 1.26831 1.51246 1.24796 0.94741 0.99079 0.94693 0.86433 0.80701 0.83473 0.76968 1.19479 1.21656 1.21287 1.21120 0.93936 0.88168 1.45801 0.90986 1.19341 0.83173 0.94357 0.82191 1.45820 1.11490 1.62100 1.02864 1.21854 0.93397 0.81961 0.82816 1.92713 1.02679 1.70127 1.83702 1.42261 1.09560 1.73565 1.03527 1.17428 0.99588 0.95000 0.81876 1.20782 1.03076 0.97612 0.93114 1.20582 0.99090 0.98635 0.95209 1.20884 1.01561 0.99339 0.84798 1.98337 1.92169 1.98359 1.16999 1.20868 1.01158 0.98683 0.92379 1.21747 0.94196 0.98191 0.93819 1.22515 1.01714 0.92314 0.98141 1.22281 0.98076 0.97847 0.98606 1.22213 0.97951 0.98469 0.97835 1.22811 0.98452 0.93819 1.01374 0.93330 0.78692 0.76536 0.85558 0.85315 0.85075 0.82142 0.90849 0.91425 0.92958 0.93474 0.93574 0.93041 0.90168 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.51 12.03 55.43 0.67 -21.84 16 2 C 0.07 1.73 5.31 -17.82 -0.09 1.64 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.45 -11.13 5.38 -34.44 -0.19 -11.31 16 8 H 0.07 1.93 7.76 -52.49 -0.41 1.52 16 9 C 0.29 6.07 0.26 -130.99 -0.03 6.04 16 10 N -0.60 -11.74 3.99 -48.53 -0.19 -11.93 16 11 C 0.56 11.15 7.30 -86.92 -0.63 10.51 16 12 S -0.63 -14.64 21.05 -107.50 -2.26 -16.90 16 13 N -0.66 -10.66 5.32 -11.39 -0.06 -10.72 16 14 C 0.16 2.48 5.93 -83.68 -0.50 1.98 16 15 C -0.12 -1.62 9.97 -39.40 -0.39 -2.01 16 16 C -0.11 -1.44 9.82 -39.57 -0.39 -1.83 16 17 C -0.04 -0.53 6.32 -39.47 -0.25 -0.78 16 18 Cl -0.09 -1.08 28.95 -51.86 -1.50 -2.58 16 19 C -0.11 -1.65 9.82 -39.57 -0.39 -2.04 16 20 C -0.05 -0.94 7.87 -39.39 -0.31 -1.25 16 21 C -0.11 -2.05 5.48 -25.07 -0.14 -2.19 16 22 C -0.13 -2.04 6.78 -25.61 -0.17 -2.22 16 23 C -0.13 -2.06 6.78 -25.61 -0.17 -2.23 16 24 C -0.13 -2.46 5.40 -25.08 -0.14 -2.59 16 25 H 0.26 6.44 8.32 -40.82 -0.34 6.10 16 26 H 0.38 6.69 8.53 -40.82 -0.35 6.35 16 27 H 0.40 5.20 8.84 -40.82 -0.36 4.84 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.16 3.25 6.11 -44.55 -0.27 2.98 16 32 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 33 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.72 5.98 -51.93 -0.31 1.41 16 39 H 0.07 1.40 8.02 -51.93 -0.42 0.98 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -27.39 340.91 -12.07 -39.46 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.04 Total: 11.37 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.79 Total: -8.27 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.41 Total: -44.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -14.64 SS G_CDS: -2.26 Total: -16.90 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.39 -12.07 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197362504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.764 kcal (2) G-P(sol) polarization free energy of solvation -27.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds