Wall clock time and date at job start Tue Mar 31 2020 14:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99634 * 2 1 4 4 H 1.48506 * 109.46708 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47215 * 299.99682 * 3 2 1 6 6 H 1.48491 * 109.46951 * 60.00263 * 3 2 1 7 7 C 1.37867 * 120.00466 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00326 * 184.67249 * 7 2 1 9 9 C 1.50708 * 119.99892 * 4.67583 * 7 2 1 10 10 N 1.46494 * 110.66935 * 306.56392 * 9 7 2 11 11 C 1.34775 * 120.00346 * 302.04604 * 10 9 7 12 12 S 1.71198 * 119.99842 * 5.07904 * 11 10 9 13 13 N 1.34778 * 120.00148 * 185.08168 * 11 10 9 14 14 C 1.39949 * 120.00041 * 175.76129 * 13 11 10 15 15 C 1.38869 * 120.05755 * 225.14993 * 14 13 11 16 16 C 1.38108 * 119.94098 * 179.76702 * 15 14 13 17 17 C 1.38390 * 120.05665 * 0.51406 * 16 15 14 18 18 Cl 1.73598 * 119.94214 * 179.72280 * 17 16 15 19 19 C 1.38381 * 120.11604 * 359.73964 * 17 16 15 20 20 C 1.38115 * 120.06039 * 0.02562 * 19 17 16 21 21 C 1.54887 * 110.91348 * 69.91248 * 9 7 2 22 22 C 1.54268 * 104.19458 * 156.33449 * 21 9 7 23 23 C 1.53875 * 106.59684 * 336.38401 * 22 21 9 24 24 C 1.54270 * 106.59785 * 0.02562 * 23 22 21 25 25 H 0.97001 * 120.00468 * 5.00367 * 1 2 3 26 26 H 0.97003 * 119.99656 * 122.04482 * 10 9 7 27 27 H 0.97004 * 119.99828 * 355.76656 * 13 11 10 28 28 H 1.07996 * 120.03356 * 0.02562 * 15 14 13 29 29 H 1.07996 * 119.97464 * 180.23248 * 16 15 14 30 30 H 1.07999 * 119.97414 * 179.97438 * 19 17 16 31 31 H 1.07995 * 120.03294 * 179.97438 * 20 19 17 32 32 H 1.08995 * 110.48997 * 37.65333 * 21 9 7 33 33 H 1.09002 * 110.48133 * 275.00522 * 21 9 7 34 34 H 1.09002 * 110.02763 * 217.10511 * 22 21 9 35 35 H 1.08991 * 110.03501 * 95.67313 * 22 21 9 36 36 H 1.09000 * 110.03349 * 119.28756 * 23 22 21 37 37 H 1.09001 * 110.03545 * 240.66722 * 23 22 21 38 38 H 1.08997 * 110.48596 * 142.28970 * 24 23 22 39 39 H 1.09006 * 110.48195 * 264.92378 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0819 -1.1955 0.0757 9 6 1.2549 -2.4969 -0.1075 10 7 0.2139 -2.5804 0.9199 11 6 0.5437 -2.4821 2.2230 12 16 2.1575 -2.1301 2.6733 13 7 -0.3969 -2.6610 3.1715 14 6 -0.0381 -2.6471 4.5242 15 6 -0.5352 -3.6161 5.3857 16 6 -0.1758 -3.6030 6.7191 17 6 0.6706 -2.6189 7.1991 18 17 1.1148 -2.6009 8.8772 19 6 1.1632 -1.6490 6.3438 20 6 0.8108 -1.6604 5.0085 21 6 0.6461 -2.6701 -1.5212 22 6 0.4757 -4.1955 -1.6754 23 6 1.4803 -4.8498 -0.7108 24 6 2.2257 -3.6990 -0.0036 25 1 -0.4851 0.8368 -0.0733 26 1 -0.7127 -2.7065 0.6623 27 1 -1.3225 -2.7995 2.9167 28 1 -1.1991 -4.3819 5.0125 29 1 -0.5591 -4.3585 7.3888 30 1 1.8233 -0.8818 6.7210 31 1 1.1951 -0.9030 4.3415 32 1 1.3268 -2.2836 -2.2797 33 1 -0.3204 -2.1700 -1.5841 34 1 0.6942 -4.4938 -2.7008 35 1 -0.5406 -4.4865 -1.4100 36 1 0.9516 -5.4582 0.0229 37 1 2.1858 -5.4663 -1.2679 38 1 2.4122 -3.9501 1.0405 39 1 3.1617 -3.4784 -0.5169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197362504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:59 Heat of formation + Delta-G solvation = 25.288511 kcal Electronic energy + Delta-G solvation = -23154.969560 eV Core-core repulsion = 19827.748838 eV Total energy + Delta-G solvation = -3327.220722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02481 -40.01300 -38.09698 -37.05178 -34.87125 -33.94009 -32.02163 -30.42241 -29.44748 -29.09093 -26.03674 -25.05763 -23.69105 -22.98762 -21.25836 -20.88426 -19.39618 -18.88312 -18.36869 -17.46240 -16.67637 -16.58093 -16.34478 -16.07915 -15.57641 -15.16442 -14.93735 -14.63323 -14.41788 -14.22592 -13.71588 -13.63002 -13.15500 -13.03421 -12.74063 -12.57025 -12.42685 -12.40194 -12.13290 -11.89610 -11.82860 -11.74674 -11.72185 -11.37856 -11.12877 -11.10931 -10.59487 -10.17509 -9.98718 -9.11673 -8.40968 -8.03197 -7.76768 -5.87424 0.03200 0.45707 0.94417 1.20872 1.33982 1.41231 1.43700 1.51708 1.97845 2.49774 2.74771 2.94897 3.37577 3.91896 4.02796 4.08167 4.09312 4.19841 4.36010 4.44891 4.60513 4.79406 4.92305 4.96747 4.97554 4.99150 5.08886 5.16909 5.23389 5.29987 5.36429 5.36820 5.42927 5.58802 5.60916 5.71437 5.81280 5.93001 5.98156 6.33005 6.45903 6.87843 6.91625 7.58268 8.97378 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.004293 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.994173 B = 6520.822377 C = 7616.259575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.042 3.958 3 Si 0.922 3.078 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.300 1.300 7 C -0.452 4.452 8 H 0.039 0.961 9 C 0.287 3.713 10 N -0.597 5.597 11 C 0.578 3.422 12 S -0.707 6.707 13 N -0.640 5.640 14 C 0.134 3.866 15 C -0.107 4.107 16 C -0.105 4.105 17 C -0.039 4.039 18 Cl -0.072 7.072 19 C -0.117 4.117 20 C -0.075 4.075 21 C -0.102 4.102 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.122 4.122 25 H 0.254 0.746 26 H 0.392 0.608 27 H 0.417 0.583 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.133 0.867 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 -10.210 7.203 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.157 4.157 3 Si 0.752 3.248 4 H -0.208 1.208 5 H -0.206 1.206 6 H -0.228 1.228 7 C -0.492 4.492 8 H 0.057 0.943 9 C 0.204 3.796 10 N -0.216 5.216 11 C 0.214 3.786 12 S -0.574 6.574 13 N -0.270 5.270 14 C 0.039 3.961 15 C -0.128 4.128 16 C -0.125 4.125 17 C -0.067 4.067 18 Cl -0.043 7.043 19 C -0.138 4.138 20 C -0.099 4.099 21 C -0.141 4.141 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.162 4.162 25 H 0.063 0.937 26 H 0.229 0.771 27 H 0.257 0.743 28 H 0.179 0.821 29 H 0.180 0.820 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.418 -9.872 7.443 13.930 hybrid contribution -0.688 1.483 -0.371 1.676 sum -7.105 -8.390 7.072 13.072 Atomic orbital electron populations 1.69892 1.05657 1.26502 1.52532 1.25016 0.95288 0.99889 0.95535 0.86037 0.79509 0.82664 0.76547 1.20839 1.20583 1.22762 1.21105 0.92707 0.90289 1.45098 0.94289 1.19285 0.83803 0.93045 0.83453 1.45450 1.11827 1.61897 1.02448 1.21447 0.92635 0.81051 0.83443 1.92907 1.06294 1.73252 1.84936 1.42042 1.09733 1.71924 1.03255 1.17643 1.00572 0.96055 0.81817 1.21089 1.02158 0.96893 0.92660 1.21001 0.97651 0.98377 0.95443 1.20999 1.01259 0.99000 0.85419 1.98346 1.92079 1.98301 1.15575 1.20879 1.01432 0.99537 0.91991 1.21433 0.95760 0.98393 0.94348 1.22374 1.00493 0.95118 0.96135 1.22195 0.99045 0.94617 0.99729 1.22135 0.98106 0.97206 0.98019 1.22684 0.98073 0.94920 1.00491 0.93709 0.77149 0.74295 0.82056 0.81966 0.84951 0.86008 0.92153 0.92371 0.90881 0.91430 0.92466 0.91258 0.92197 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.60 12.03 21.44 0.26 -45.35 16 2 C 0.04 2.20 5.31 84.65 0.45 2.65 16 3 Si 0.92 45.05 29.54 68.60 2.03 47.08 16 4 H -0.28 -14.26 7.11 99.48 0.71 -13.56 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 7 C -0.45 -23.09 5.38 25.60 0.14 -22.96 16 8 H 0.04 2.21 7.76 -2.91 -0.02 2.19 16 9 C 0.29 11.97 0.26 4.14 0.00 11.97 16 10 N -0.60 -22.75 3.99 -307.46 -1.23 -23.97 16 11 C 0.58 22.96 7.30 179.05 1.31 24.27 16 12 S -0.71 -34.41 21.05 -56.49 -1.19 -35.60 16 13 N -0.64 -19.80 5.32 -189.96 -1.01 -20.81 16 14 C 0.13 4.07 5.93 38.15 0.23 4.30 16 15 C -0.11 -2.41 9.97 22.39 0.22 -2.19 16 16 C -0.10 -2.25 9.82 22.28 0.22 -2.03 16 17 C -0.04 -1.00 6.32 22.34 0.14 -0.86 16 18 Cl -0.07 -1.62 28.95 -2.72 -0.08 -1.70 16 19 C -0.12 -3.54 9.82 22.27 0.22 -3.33 16 20 C -0.08 -2.64 7.87 22.39 0.18 -2.47 16 21 C -0.10 -3.76 5.48 31.67 0.17 -3.58 16 22 C -0.12 -3.31 6.78 31.32 0.21 -3.10 16 23 C -0.12 -3.47 6.78 31.32 0.21 -3.26 16 24 C -0.12 -4.79 5.40 31.66 0.17 -4.62 16 25 H 0.25 12.76 8.32 -92.71 -0.77 11.99 16 26 H 0.39 13.08 8.53 -92.71 -0.79 12.29 16 27 H 0.42 9.80 8.84 -92.70 -0.82 8.98 16 28 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 31 H 0.12 5.28 6.11 -7.96 -0.05 5.23 16 32 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 33 H 0.06 2.24 7.94 -2.39 -0.02 2.22 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 2.60 5.98 -2.39 -0.01 2.59 16 39 H 0.05 2.23 8.02 -2.38 -0.02 2.21 16 Total: -1.00 -62.56 340.91 2.10 -60.46 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.55 Total: 25.09 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 3.87 Total: -5.20 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -1.98 Total: -90.13 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -34.41 SS G_CDS: -1.19 Total: -35.60 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -62.56 2.10 -60.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197362504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.748 kcal (2) G-P(sol) polarization free energy of solvation -62.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds