Wall clock time and date at job start Tue Mar 31 2020 14:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99652 * 3 2 1 5 5 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47045 * 119.99717 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99936 * 90.00092 * 10 9 7 12 12 C 1.50703 * 109.47126 * 89.99796 * 11 10 9 13 13 C 1.38245 * 119.98472 * 269.72505 * 12 11 10 14 14 C 1.38212 * 120.01135 * 179.72337 * 13 12 11 15 15 C 1.38352 * 119.98586 * 0.55387 * 14 13 12 16 16 Cl 1.73602 * 120.01400 * 179.70095 * 15 14 13 17 17 C 1.38348 * 119.97511 * 359.72260 * 15 14 13 18 18 C 1.38223 * 119.98610 * 359.97438 * 17 15 14 19 19 C 1.34773 * 119.99969 * 269.72057 * 10 9 7 20 20 S 1.71198 * 119.99787 * 180.02562 * 19 10 9 21 21 N 1.34775 * 119.99959 * 0.02562 * 19 10 9 22 22 C 1.46507 * 119.99880 * 179.97438 * 21 19 10 23 23 C 1.52999 * 117.49779 * 223.62059 * 22 21 19 24 24 C 1.52994 * 117.50140 * 154.99670 * 22 21 19 25 25 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 27 27 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 28 28 H 1.08994 * 109.47173 * 210.00167 * 11 10 9 29 29 H 1.09005 * 109.47077 * 330.00338 * 11 10 9 30 30 H 1.08002 * 119.99771 * 0.02562 * 13 12 11 31 31 H 1.08004 * 120.01036 * 180.27398 * 14 13 12 32 32 H 1.08000 * 120.01221 * 179.97438 * 17 15 14 33 33 H 1.07996 * 119.99041 * 179.97438 * 18 17 15 34 34 H 0.96990 * 120.00509 * 359.97438 * 21 19 10 35 35 H 1.09004 * 115.55059 * 9.32612 * 22 21 19 36 36 H 1.09001 * 117.49941 * 359.97438 * 23 22 21 37 37 H 1.09001 * 117.49839 * 145.01839 * 23 22 21 38 38 H 1.08997 * 117.50152 * 214.98061 * 24 22 21 39 39 H 1.09006 * 117.49754 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6791 -4.1694 1.2693 12 6 1.7623 -5.2836 1.7043 13 6 0.6714 -5.0071 2.5071 14 6 -0.1730 -6.0276 2.9017 15 6 0.0803 -7.3279 2.5026 16 17 -0.9754 -8.6115 3.0042 17 6 1.1754 -7.6049 1.7039 18 6 2.0156 -6.5825 1.3047 19 6 2.6367 -4.1285 -1.1666 20 16 3.7487 -5.4302 -1.1666 21 7 2.1948 -3.6197 -2.3338 22 6 2.6666 -4.1801 -3.6026 23 6 3.0511 -3.1967 -4.7097 24 6 1.7639 -4.0154 -4.8268 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8904 28 1 3.6885 -4.5593 1.1390 29 1 2.6867 -3.3877 2.0290 30 1 0.4761 -3.9926 2.8221 31 1 -1.0278 -5.8109 3.5253 32 1 1.3739 -8.6197 1.3923 33 1 2.8707 -6.7987 0.6815 34 1 1.5645 -2.8825 -2.3339 35 1 3.2446 -5.1009 -3.5238 36 1 2.9527 -2.1327 -4.4943 37 1 3.8824 -3.4702 -5.3595 38 1 1.7483 -4.8275 -5.5536 39 1 0.8187 -3.4903 -4.6882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200624426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:56 Heat of formation + Delta-G solvation = 56.597400 kcal Electronic energy + Delta-G solvation = -22532.360051 eV Core-core repulsion = 19206.496984 eV Total energy + Delta-G solvation = -3325.863067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.61758 -38.70407 -37.09738 -36.29824 -33.45301 -33.15008 -30.88534 -30.85878 -28.23392 -25.98135 -24.17968 -22.58479 -22.31268 -22.10919 -21.43206 -20.54126 -17.54181 -17.28642 -16.99601 -16.61938 -15.32850 -15.26628 -15.17314 -14.89587 -14.29745 -14.18447 -13.74095 -13.34517 -13.24794 -13.06933 -12.61802 -12.58465 -11.98135 -11.86168 -11.54228 -11.48560 -11.38415 -11.22478 -11.19445 -10.96657 -10.77991 -10.63711 -10.50380 -10.42598 -10.23360 -9.83945 -8.87467 -8.82383 -8.51155 -8.13820 -7.21676 -6.87047 -6.47456 -4.59844 1.23358 1.51997 2.05224 2.20735 2.53548 3.07734 3.12514 3.13883 3.17491 3.73056 4.00660 4.03664 4.15397 4.85206 4.88916 4.95371 5.04009 5.06193 5.09139 5.14488 5.41366 5.60820 5.67554 5.73853 5.85901 5.88282 6.03039 6.13337 6.14503 6.18949 6.28107 6.37881 6.48841 6.66374 6.76826 6.86419 7.04073 7.09384 7.43268 7.54629 7.62756 7.87556 8.48423 9.10687 10.57817 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.004443 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.300236 B = 6300.305997 C = 8092.973773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.226 3.774 10 N -0.538 5.538 11 C 0.152 3.848 12 C -0.097 4.097 13 C -0.089 4.089 14 C -0.122 4.122 15 C -0.032 4.032 16 Cl -0.086 7.086 17 C -0.122 4.122 18 C -0.076 4.076 19 C 0.586 3.414 20 S -0.713 6.713 21 N -0.656 5.656 22 C 0.084 3.916 23 C -0.189 4.189 24 C -0.191 4.191 25 H 0.270 0.730 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.162 0.838 34 H 0.410 0.590 35 H 0.164 0.836 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 -8.599 -0.212 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.084 0.916 9 C 0.104 3.896 10 N -0.241 5.241 11 C 0.028 3.972 12 C -0.099 4.099 13 C -0.108 4.108 14 C -0.141 4.141 15 C -0.059 4.059 16 Cl -0.057 7.057 17 C -0.141 4.141 18 C -0.095 4.095 19 C 0.223 3.777 20 S -0.585 6.585 21 N -0.286 5.286 22 C -0.023 4.023 23 C -0.228 4.228 24 C -0.230 4.230 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.179 0.821 34 H 0.251 0.749 35 H 0.181 0.819 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.156 -9.334 -0.128 9.337 hybrid contribution -0.886 2.067 0.034 2.249 sum -1.042 -7.268 -0.094 7.342 Atomic orbital electron populations 1.69904 1.06077 1.28072 1.48211 1.24946 0.94912 0.99561 0.94008 0.86455 0.79524 0.81894 0.79153 1.19932 1.20927 1.19772 1.21334 0.93776 0.89697 1.54115 0.91572 1.19753 0.87691 0.82765 0.99370 1.47468 1.41958 1.31620 1.03042 1.20694 0.98540 0.94010 0.83920 1.20300 0.96724 0.95200 0.97631 1.21169 0.93547 0.99139 0.96948 1.20947 1.00643 0.90806 1.01720 1.20987 0.94299 0.89185 1.01389 1.98344 1.66007 1.50971 1.90361 1.21105 0.94183 1.00430 0.98361 1.21892 0.99870 0.91196 0.96563 1.21819 0.85801 0.88124 0.81999 1.92798 1.42420 1.28680 1.94620 1.44317 1.45260 1.35870 1.03136 1.22147 1.01946 1.00577 0.77673 1.23402 0.98727 0.98384 1.02282 1.23383 0.95404 1.03580 1.00590 0.92009 0.94846 0.92993 0.86766 0.88588 0.84954 0.85337 0.85331 0.82115 0.74916 0.81934 0.88411 0.87851 0.87763 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.40 13.29 55.43 0.74 -21.66 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 19.22 29.54 -169.99 -5.02 14.20 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.55 -12.96 9.39 -34.44 -0.32 -13.28 16 8 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.23 4.77 4.94 -5.19 -0.03 4.75 16 10 N -0.54 -10.13 2.44 -178.46 -0.44 -10.56 16 11 C 0.15 2.55 5.36 -5.19 -0.03 2.52 16 12 C -0.10 -1.52 5.46 -104.62 -0.57 -2.09 16 13 C -0.09 -1.31 9.70 -39.59 -0.38 -1.69 16 14 C -0.12 -1.68 9.83 -39.55 -0.39 -2.07 16 15 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 16 Cl -0.09 -1.06 28.96 -51.86 -1.50 -2.57 16 17 C -0.12 -1.72 9.83 -39.55 -0.39 -2.11 16 18 C -0.08 -1.17 9.27 -39.59 -0.37 -1.54 16 19 C 0.59 11.13 7.70 -86.92 -0.67 10.47 16 20 S -0.71 -14.09 23.95 -107.50 -2.57 -16.67 16 21 N -0.66 -11.36 5.43 -55.52 -0.30 -11.66 16 22 C 0.08 1.23 6.27 -67.93 -0.43 0.81 16 23 C -0.19 -2.37 10.46 -26.73 -0.28 -2.65 16 24 C -0.19 -2.26 10.45 -26.73 -0.28 -2.54 16 25 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 26 H 0.03 0.74 6.35 -51.93 -0.33 0.41 16 27 H 0.05 1.15 8.07 -51.93 -0.42 0.73 16 28 H 0.11 1.97 6.53 -51.93 -0.34 1.63 16 29 H 0.10 1.55 8.01 -51.93 -0.42 1.13 16 30 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.16 2.67 5.80 -52.49 -0.30 2.37 16 34 H 0.41 7.32 6.55 -40.82 -0.27 7.05 16 35 H 0.16 2.58 6.43 -51.93 -0.33 2.25 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -25.78 355.95 -13.12 -38.90 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -4.91 Total: 13.18 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -4.48 Total: -8.52 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.00 Total: -43.89 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: -14.09 SS G_CDS: -2.57 Total: -16.67 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -25.78 -13.12 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200624426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.498 kcal (2) G-P(sol) polarization free energy of solvation -25.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds