Wall clock time and date at job start Tue Mar 31 2020 14:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99652 * 3 2 1 5 5 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47045 * 119.99717 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99936 * 90.00092 * 10 9 7 12 12 C 1.50703 * 109.47126 * 89.99796 * 11 10 9 13 13 C 1.38245 * 119.98472 * 269.72505 * 12 11 10 14 14 C 1.38212 * 120.01135 * 179.72337 * 13 12 11 15 15 C 1.38352 * 119.98586 * 0.55387 * 14 13 12 16 16 Cl 1.73602 * 120.01400 * 179.70095 * 15 14 13 17 17 C 1.38348 * 119.97511 * 359.72260 * 15 14 13 18 18 C 1.38223 * 119.98610 * 359.97438 * 17 15 14 19 19 C 1.34773 * 119.99969 * 269.72057 * 10 9 7 20 20 S 1.71198 * 119.99787 * 180.02562 * 19 10 9 21 21 N 1.34775 * 119.99959 * 0.02562 * 19 10 9 22 22 C 1.46507 * 119.99880 * 179.97438 * 21 19 10 23 23 C 1.52999 * 117.49779 * 223.62059 * 22 21 19 24 24 C 1.52994 * 117.50140 * 154.99670 * 22 21 19 25 25 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 27 27 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 28 28 H 1.08994 * 109.47173 * 210.00167 * 11 10 9 29 29 H 1.09005 * 109.47077 * 330.00338 * 11 10 9 30 30 H 1.08002 * 119.99771 * 0.02562 * 13 12 11 31 31 H 1.08004 * 120.01036 * 180.27398 * 14 13 12 32 32 H 1.08000 * 120.01221 * 179.97438 * 17 15 14 33 33 H 1.07996 * 119.99041 * 179.97438 * 18 17 15 34 34 H 0.96990 * 120.00509 * 359.97438 * 21 19 10 35 35 H 1.09004 * 115.55059 * 9.32612 * 22 21 19 36 36 H 1.09001 * 117.49941 * 359.97438 * 23 22 21 37 37 H 1.09001 * 117.49839 * 145.01839 * 23 22 21 38 38 H 1.08997 * 117.50152 * 214.98061 * 24 22 21 39 39 H 1.09006 * 117.49754 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6791 -4.1694 1.2693 12 6 1.7623 -5.2836 1.7043 13 6 0.6714 -5.0071 2.5071 14 6 -0.1730 -6.0276 2.9017 15 6 0.0803 -7.3279 2.5026 16 17 -0.9754 -8.6115 3.0042 17 6 1.1754 -7.6049 1.7039 18 6 2.0156 -6.5825 1.3047 19 6 2.6367 -4.1285 -1.1666 20 16 3.7487 -5.4302 -1.1666 21 7 2.1948 -3.6197 -2.3338 22 6 2.6666 -4.1801 -3.6026 23 6 3.0511 -3.1967 -4.7097 24 6 1.7639 -4.0154 -4.8268 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8904 28 1 3.6885 -4.5593 1.1390 29 1 2.6867 -3.3877 2.0290 30 1 0.4761 -3.9926 2.8221 31 1 -1.0278 -5.8109 3.5253 32 1 1.3739 -8.6197 1.3923 33 1 2.8707 -6.7987 0.6815 34 1 1.5645 -2.8825 -2.3339 35 1 3.2446 -5.1009 -3.5238 36 1 2.9527 -2.1327 -4.4943 37 1 3.8824 -3.4702 -5.3595 38 1 1.7483 -4.8275 -5.5536 39 1 0.8187 -3.4903 -4.6882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200624426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:55 Heat of formation + Delta-G solvation = 47.723807 kcal Electronic energy + Delta-G solvation = -22532.744839 eV Core-core repulsion = 19206.496984 eV Total energy + Delta-G solvation = -3326.247855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93176 -39.94018 -38.32158 -37.38386 -35.09876 -34.58577 -32.20400 -32.00435 -29.90709 -27.28817 -25.91378 -23.73831 -23.32423 -23.29741 -22.78624 -21.90520 -19.03924 -18.76669 -18.50626 -17.90167 -16.70420 -16.50823 -16.46279 -16.41346 -15.59850 -15.39217 -15.22712 -14.47698 -14.41596 -14.34627 -14.21102 -13.80634 -13.56074 -13.27569 -13.00711 -12.79344 -12.65971 -12.44962 -12.43051 -12.39612 -12.32168 -11.97103 -11.91353 -11.73191 -11.46911 -11.36166 -10.73578 -9.96893 -9.68145 -9.50012 -8.77790 -8.42307 -8.30629 -6.50603 0.06307 0.37482 0.57576 1.02404 1.12659 1.38211 1.41411 1.47692 1.77893 2.28765 2.42843 2.79355 2.94992 2.98055 3.76694 3.78991 3.83560 3.98503 4.03832 4.09843 4.15794 4.42653 4.50261 4.57329 4.71155 4.73113 4.76313 4.84681 4.93313 4.98368 5.08847 5.19191 5.24359 5.31423 5.38869 5.50403 5.59155 5.72826 5.81100 5.87650 6.06560 6.38355 6.62168 7.22584 8.71030 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.004443 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.300236 B = 6300.305997 C = 8092.973773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.034 3.966 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.243 3.757 10 N -0.540 5.540 11 C 0.154 3.846 12 C -0.105 4.105 13 C -0.094 4.094 14 C -0.120 4.120 15 C -0.034 4.034 16 Cl -0.070 7.070 17 C -0.122 4.122 18 C -0.083 4.083 19 C 0.581 3.419 20 S -0.733 6.733 21 N -0.651 5.651 22 C 0.051 3.949 23 C -0.179 4.179 24 C -0.167 4.167 25 H 0.271 0.729 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.407 0.593 35 H 0.152 0.848 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -8.778 -0.661 8.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.168 4.168 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.120 3.880 10 N -0.243 5.243 11 C 0.031 3.969 12 C -0.107 4.107 13 C -0.113 4.113 14 C -0.139 4.139 15 C -0.061 4.061 16 Cl -0.041 7.041 17 C -0.140 4.140 18 C -0.103 4.103 19 C 0.216 3.784 20 S -0.605 6.605 21 N -0.280 5.280 22 C -0.055 4.055 23 C -0.217 4.217 24 C -0.205 4.205 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.247 0.753 35 H 0.169 0.831 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.587 -9.531 -0.596 9.568 hybrid contribution -0.770 2.059 0.152 2.204 sum -1.357 -7.472 -0.444 7.607 Atomic orbital electron populations 1.69975 1.07057 1.28676 1.49160 1.25535 0.95479 1.02029 0.93798 0.85636 0.78431 0.78933 0.78918 1.19925 1.20623 1.19703 1.21454 0.93280 0.90851 1.53613 0.92733 1.19384 0.87558 0.82681 0.98366 1.47415 1.41826 1.31312 1.03758 1.20709 0.98489 0.94465 0.83192 1.20198 0.97140 0.94860 0.98498 1.21229 0.93462 0.99687 0.96922 1.21165 1.00807 0.90503 1.01393 1.21075 0.94334 0.89734 1.00980 1.98351 1.65384 1.50192 1.90139 1.21247 0.93927 1.00804 0.98057 1.21756 0.99986 0.91552 0.96979 1.21836 0.85904 0.88152 0.82476 1.92770 1.43348 1.29541 1.94837 1.44486 1.44541 1.35321 1.03609 1.22287 1.04517 1.01159 0.77507 1.23459 0.99987 0.97490 1.00786 1.23474 0.94909 1.03654 0.98474 0.91957 0.95708 0.93945 0.87471 0.88343 0.84672 0.83394 0.83831 0.83438 0.75314 0.83110 0.89247 0.85844 0.85290 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.89 13.29 21.45 0.28 -45.60 16 2 C 0.03 1.63 5.46 84.65 0.46 2.09 16 3 Si 0.96 39.01 29.54 68.60 2.03 41.04 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.55 -26.12 9.39 25.60 0.24 -25.88 16 8 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 9 C 0.24 10.37 4.94 85.63 0.42 10.80 16 10 N -0.54 -20.62 2.44 -718.52 -1.75 -22.37 16 11 C 0.15 5.27 5.36 85.63 0.46 5.73 16 12 C -0.11 -3.31 5.46 -19.86 -0.11 -3.42 16 13 C -0.09 -2.72 9.70 22.27 0.22 -2.50 16 14 C -0.12 -3.13 9.83 22.29 0.22 -2.91 16 15 C -0.03 -0.90 6.32 22.32 0.14 -0.76 16 16 Cl -0.07 -1.59 28.96 -2.72 -0.08 -1.67 16 17 C -0.12 -3.32 9.83 22.29 0.22 -3.10 16 18 C -0.08 -2.58 9.27 22.27 0.21 -2.37 16 19 C 0.58 22.32 7.70 179.06 1.38 23.70 16 20 S -0.73 -29.29 23.95 -56.49 -1.35 -30.64 16 21 N -0.65 -22.60 5.43 -329.57 -1.79 -24.39 16 22 C 0.05 1.47 6.27 44.99 0.28 1.76 16 23 C -0.18 -4.18 10.46 30.59 0.32 -3.86 16 24 C -0.17 -3.61 10.45 30.59 0.32 -3.29 16 25 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 26 H 0.03 1.11 6.35 -2.39 -0.02 1.10 16 27 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 28 H 0.11 3.80 6.53 -2.39 -0.02 3.79 16 29 H 0.10 3.24 8.01 -2.38 -0.02 3.22 16 30 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.15 4.99 5.80 -2.91 -0.02 4.97 16 34 H 0.41 14.60 6.55 -92.72 -0.61 13.99 16 35 H 0.15 4.75 6.43 -2.38 -0.02 4.74 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -53.67 355.95 2.58 -51.09 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.47 Total: 36.57 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 4.78 Total: -4.02 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -3.26 Total: -92.36 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 16 Polarization: -29.29 SS G_CDS: -1.35 Total: -30.64 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -53.67 2.58 -51.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200624426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.814 kcal (2) G-P(sol) polarization free energy of solvation -53.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds