Wall clock time and date at job start Tue Mar 31 2020 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47194 * 90.00371 * 3 2 1 5 5 H 1.48509 * 109.47015 * 210.00335 * 3 2 1 6 6 H 1.48500 * 109.47380 * 329.99893 * 3 2 1 7 7 C 1.37882 * 119.99772 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85007 * 359.97438 * 7 2 1 9 9 C 1.53230 * 108.53471 * 128.63656 * 8 7 2 10 10 C 1.52956 * 109.40564 * 54.62485 * 9 8 7 11 11 H 1.09001 * 109.41311 * 56.51291 * 10 9 8 12 12 N 1.46500 * 109.41231 * 176.29846 * 10 9 8 13 13 C 1.34782 * 119.99999 * 205.00310 * 12 10 9 14 14 S 1.71198 * 119.99848 * 359.97438 * 13 12 10 15 15 N 1.34767 * 120.00203 * 180.02562 * 13 12 10 16 16 C 1.39954 * 120.00317 * 175.68731 * 15 13 12 17 17 C 1.38860 * 120.07012 * 47.36673 * 16 15 13 18 18 C 1.38120 * 119.93612 * 179.97438 * 17 16 15 19 19 C 1.38291 * 120.09437 * 0.02562 * 18 17 16 20 20 C 1.38265 * 120.15089 * 359.97252 * 19 18 17 21 21 C 1.38223 * 120.05706 * 359.75315 * 20 19 18 22 22 Cl 1.73603 * 120.04364 * 180.25386 * 21 20 19 23 23 C 1.52957 * 109.81894 * 296.40364 * 10 9 8 24 24 C 1.51264 * 120.84839 * 179.71994 * 7 2 1 25 25 H 0.97003 * 120.00440 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.62655 * 248.34409 * 8 7 2 27 27 H 1.08994 * 109.62747 * 8.72953 * 8 7 2 28 28 H 1.08998 * 109.48354 * 174.60607 * 9 8 7 29 29 H 1.09003 * 109.48219 * 294.63649 * 9 8 7 30 30 H 0.96996 * 120.00513 * 25.00006 * 12 10 9 31 31 H 0.97005 * 120.00348 * 355.68524 * 15 13 12 32 32 H 1.07997 * 120.03541 * 359.95311 * 17 16 15 33 33 H 1.08003 * 119.94957 * 179.97438 * 18 17 16 34 34 H 1.08008 * 119.92304 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.97104 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.48473 * 183.57743 * 23 10 9 37 37 H 1.08996 * 109.48118 * 303.60489 * 23 10 9 38 38 H 1.09008 * 109.62733 * 351.07622 * 24 7 2 39 39 H 1.09001 * 109.63379 * 111.64990 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 1.4000 5 1 3.5467 1.4401 -0.7002 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 1.2676 -2.5152 -0.0005 9 6 1.8221 -3.3822 -1.1358 10 6 3.3392 -3.5067 -0.9857 11 1 3.5738 -3.9124 -0.0016 12 7 3.8584 -4.4068 -2.0184 13 6 5.0161 -5.0670 -1.8169 14 16 5.8801 -4.8531 -0.3544 15 7 5.4941 -5.8946 -2.7670 16 6 6.7394 -6.5101 -2.5970 17 6 7.0508 -7.1300 -1.3941 18 6 8.2805 -7.7371 -1.2296 19 6 9.2019 -7.7278 -2.2607 20 6 8.8958 -7.1116 -3.4601 21 6 7.6649 -6.5072 -3.6335 22 17 7.2785 -5.7394 -5.1418 23 6 3.9899 -2.1306 -1.1367 24 6 3.5169 -1.2166 -0.0069 25 1 -0.4851 0.8400 0.0004 26 1 1.4205 -3.0197 0.9535 27 1 0.2030 -2.3406 -0.1559 28 1 1.3699 -4.3729 -1.0908 29 1 1.5883 -2.9190 -2.0944 30 1 3.3692 -4.5277 -2.8471 31 1 4.9749 -6.0638 -3.5688 32 1 6.3323 -7.1373 -0.5879 33 1 8.5230 -8.2190 -0.2939 34 1 10.1628 -8.2030 -2.1289 35 1 9.6175 -7.1065 -4.2636 36 1 5.0740 -2.2343 -1.0923 37 1 3.7051 -1.6971 -2.0953 38 1 3.8974 -0.2081 -0.1698 39 1 3.8816 -1.5988 0.9466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200867183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:53 Heat of formation + Delta-G solvation = 28.357638 kcal Electronic energy + Delta-G solvation = -22368.237742 eV Core-core repulsion = 19041.150107 eV Total energy + Delta-G solvation = -3327.087635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31589 -38.72174 -36.83621 -36.67707 -34.34837 -31.87106 -30.98009 -29.92667 -29.58886 -27.26785 -24.52297 -22.96945 -22.52318 -21.95432 -21.51236 -19.74923 -18.67508 -18.09413 -16.73629 -16.11997 -15.89079 -15.70607 -15.02957 -14.50625 -14.47528 -14.14494 -13.92979 -13.62605 -13.21605 -12.81705 -12.38803 -12.28175 -12.17059 -11.86185 -11.70334 -11.59338 -11.23745 -11.12082 -10.98259 -10.90610 -10.75315 -10.29661 -10.10278 -9.92760 -9.42143 -9.07321 -9.02810 -8.79669 -8.52571 -8.42562 -7.62040 -6.90904 -6.14721 -4.05676 0.75670 1.08888 1.56760 1.80393 2.05734 2.61613 3.27011 3.35018 3.36875 3.45395 3.55332 4.36077 4.56836 4.77594 4.99547 5.10120 5.13210 5.22557 5.46612 5.60530 5.69941 5.88817 5.92565 6.03223 6.12392 6.28045 6.31672 6.38000 6.44725 6.57247 6.67313 6.81561 6.86178 6.90128 7.08326 7.19344 7.33716 7.44316 7.58941 7.66501 7.76055 8.32199 8.91158 9.50510 10.94655 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.003098 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.396176 B = 9036.609679 C = 9285.576005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.291 1.291 7 C -0.489 4.489 8 C 0.015 3.985 9 C -0.115 4.115 10 C 0.149 3.851 11 H 0.110 0.890 12 N -0.661 5.661 13 C 0.557 3.443 14 S -0.622 6.622 15 N -0.644 5.644 16 C 0.145 3.855 17 C -0.055 4.055 18 C -0.111 4.111 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.043 4.043 22 Cl -0.070 7.070 23 C -0.110 4.110 24 C -0.016 4.016 25 H 0.264 0.736 26 H 0.010 0.990 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.405 0.595 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 -16.225 -9.597 23.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.217 1.217 7 C -0.508 4.508 8 C -0.022 4.022 9 C -0.154 4.154 10 C 0.047 3.953 11 H 0.128 0.872 12 N -0.284 5.284 13 C 0.198 3.802 14 S -0.491 6.491 15 N -0.273 5.273 16 C 0.050 3.950 17 C -0.078 4.078 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.073 4.073 22 Cl -0.042 7.042 23 C -0.149 4.149 24 C -0.054 4.054 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.243 0.757 32 H 0.173 0.827 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 13.473 -15.721 -8.614 22.425 hybrid contribution -0.545 0.895 -1.902 2.171 sum 12.929 -14.826 -10.516 22.306 Atomic orbital electron populations 1.69827 1.06161 1.27023 1.49849 1.24837 0.94708 0.98641 0.94413 0.86678 0.79984 0.83137 0.78698 1.20243 1.18879 1.21727 1.20060 0.89509 0.91337 1.49911 1.19320 0.98722 0.92741 0.91458 1.22008 0.91654 0.98896 1.02837 1.21796 0.94436 0.88851 0.90208 0.87237 1.45896 1.19285 1.41589 1.21643 1.22421 0.85838 0.80232 0.91700 1.93363 1.60554 1.81751 1.13470 1.42110 1.19156 1.44672 1.21325 1.17060 0.84800 0.98001 0.95093 1.21549 0.98835 0.91687 0.95681 1.21124 0.93345 0.99355 0.99310 1.21151 0.99822 0.98941 0.92504 1.20799 0.94385 0.99190 0.98892 1.20884 0.95355 1.02794 0.88267 1.98371 1.94237 1.80328 1.31221 1.21797 0.98464 0.93825 1.00823 1.19685 0.96279 0.95390 0.94021 0.92557 0.97200 0.91903 0.94515 0.92741 0.77088 0.75667 0.82685 0.84913 0.85079 0.84792 0.93056 0.93552 0.94508 0.95686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 12.73 55.43 0.71 -24.30 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.91 27.54 -169.99 -4.68 16.23 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.26 -6.06 6.10 56.52 0.34 -5.71 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.49 -12.49 5.52 -98.92 -0.55 -13.04 16 8 C 0.02 0.37 5.97 -27.49 -0.16 0.20 16 9 C -0.12 -2.20 5.40 -26.63 -0.14 -2.34 16 10 C 0.15 2.70 2.12 -67.98 -0.14 2.56 16 11 H 0.11 2.23 6.82 -51.93 -0.35 1.88 16 12 N -0.66 -9.43 5.08 -55.57 -0.28 -9.71 16 13 C 0.56 8.18 7.81 -86.92 -0.68 7.51 16 14 S -0.62 -11.49 23.79 -107.50 -2.56 -14.05 16 15 N -0.64 -7.43 4.84 -11.38 -0.06 -7.49 16 16 C 0.15 1.71 5.87 -83.65 -0.49 1.22 16 17 C -0.05 -0.64 7.88 -39.39 -0.31 -0.95 16 18 C -0.11 -1.05 10.04 -39.61 -0.40 -1.45 16 19 C -0.11 -0.86 10.04 -39.55 -0.40 -1.26 16 20 C -0.11 -1.01 9.82 -39.58 -0.39 -1.40 16 21 C -0.04 -0.46 6.34 -39.32 -0.25 -0.71 16 22 Cl -0.07 -0.71 28.22 -51.86 -1.46 -2.18 16 23 C -0.11 -2.24 5.42 -26.84 -0.15 -2.38 16 24 C -0.02 -0.36 5.56 -27.69 -0.15 -0.52 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.39 4.42 8.62 -40.82 -0.35 4.06 16 31 H 0.41 3.60 8.53 -40.82 -0.35 3.25 16 32 H 0.16 2.05 6.31 -49.81 -0.31 1.73 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.05 1.06 7.47 -51.93 -0.39 0.67 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.86 4.59 -51.92 -0.24 0.63 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -29.92 338.37 -12.48 -42.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.94 Total: 4.61 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -4.31 Total: -10.61 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.37 Total: -41.50 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.68 Total: 16.23 kcal Atomic # 16 Polarization: -11.49 SS G_CDS: -2.56 Total: -14.05 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.46 Total: -2.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.92 -12.48 -42.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200867183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.758 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds