Wall clock time and date at job start Tue Mar 31 2020 14:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47194 * 90.00371 * 3 2 1 5 5 H 1.48509 * 109.47015 * 210.00335 * 3 2 1 6 6 H 1.48500 * 109.47380 * 329.99893 * 3 2 1 7 7 C 1.37882 * 119.99772 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85007 * 359.97438 * 7 2 1 9 9 C 1.53230 * 108.53471 * 128.63656 * 8 7 2 10 10 C 1.52956 * 109.40564 * 54.62485 * 9 8 7 11 11 H 1.09001 * 109.41311 * 56.51291 * 10 9 8 12 12 N 1.46500 * 109.41231 * 176.29846 * 10 9 8 13 13 C 1.34782 * 119.99999 * 205.00310 * 12 10 9 14 14 S 1.71198 * 119.99848 * 359.97438 * 13 12 10 15 15 N 1.34767 * 120.00203 * 180.02562 * 13 12 10 16 16 C 1.39954 * 120.00317 * 175.68731 * 15 13 12 17 17 C 1.38860 * 120.07012 * 47.36673 * 16 15 13 18 18 C 1.38120 * 119.93612 * 179.97438 * 17 16 15 19 19 C 1.38291 * 120.09437 * 0.02562 * 18 17 16 20 20 C 1.38265 * 120.15089 * 359.97252 * 19 18 17 21 21 C 1.38223 * 120.05706 * 359.75315 * 20 19 18 22 22 Cl 1.73603 * 120.04364 * 180.25386 * 21 20 19 23 23 C 1.52957 * 109.81894 * 296.40364 * 10 9 8 24 24 C 1.51264 * 120.84839 * 179.71994 * 7 2 1 25 25 H 0.97003 * 120.00440 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.62655 * 248.34409 * 8 7 2 27 27 H 1.08994 * 109.62747 * 8.72953 * 8 7 2 28 28 H 1.08998 * 109.48354 * 174.60607 * 9 8 7 29 29 H 1.09003 * 109.48219 * 294.63649 * 9 8 7 30 30 H 0.96996 * 120.00513 * 25.00006 * 12 10 9 31 31 H 0.97005 * 120.00348 * 355.68524 * 15 13 12 32 32 H 1.07997 * 120.03541 * 359.95311 * 17 16 15 33 33 H 1.08003 * 119.94957 * 179.97438 * 18 17 16 34 34 H 1.08008 * 119.92304 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.97104 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.48473 * 183.57743 * 23 10 9 37 37 H 1.08996 * 109.48118 * 303.60489 * 23 10 9 38 38 H 1.09008 * 109.62733 * 351.07622 * 24 7 2 39 39 H 1.09001 * 109.63379 * 111.64990 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 1.4000 5 1 3.5467 1.4401 -0.7002 6 1 1.4466 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 1.2676 -2.5152 -0.0005 9 6 1.8221 -3.3822 -1.1358 10 6 3.3392 -3.5067 -0.9857 11 1 3.5738 -3.9124 -0.0016 12 7 3.8584 -4.4068 -2.0184 13 6 5.0161 -5.0670 -1.8169 14 16 5.8801 -4.8531 -0.3544 15 7 5.4941 -5.8946 -2.7670 16 6 6.7394 -6.5101 -2.5970 17 6 7.0508 -7.1300 -1.3941 18 6 8.2805 -7.7371 -1.2296 19 6 9.2019 -7.7278 -2.2607 20 6 8.8958 -7.1116 -3.4601 21 6 7.6649 -6.5072 -3.6335 22 17 7.2785 -5.7394 -5.1418 23 6 3.9899 -2.1306 -1.1367 24 6 3.5169 -1.2166 -0.0069 25 1 -0.4851 0.8400 0.0004 26 1 1.4205 -3.0197 0.9535 27 1 0.2030 -2.3406 -0.1559 28 1 1.3699 -4.3729 -1.0908 29 1 1.5883 -2.9190 -2.0944 30 1 3.3692 -4.5277 -2.8471 31 1 4.9749 -6.0638 -3.5688 32 1 6.3323 -7.1373 -0.5879 33 1 8.5230 -8.2190 -0.2939 34 1 10.1628 -8.2030 -2.1289 35 1 9.6175 -7.1065 -4.2636 36 1 5.0740 -2.2343 -1.0923 37 1 3.7051 -1.6971 -2.0953 38 1 3.8974 -0.2081 -0.1698 39 1 3.8816 -1.5988 0.9466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200867183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:52 Heat of formation + Delta-G solvation = 12.736746 kcal Electronic energy + Delta-G solvation = -22368.915114 eV Core-core repulsion = 19041.150107 eV Total energy + Delta-G solvation = -3327.765008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28103 -39.95961 -38.10131 -37.50199 -35.79712 -33.64565 -31.74054 -31.59892 -30.71657 -28.88844 -25.72208 -24.12147 -23.67876 -23.33794 -23.01907 -21.38704 -19.74480 -19.25369 -17.95658 -17.57356 -17.03193 -16.61639 -16.44452 -16.34919 -15.42358 -15.23237 -14.97845 -14.72448 -14.60788 -14.43055 -14.13511 -13.93728 -13.45583 -12.95795 -12.82099 -12.76846 -12.60439 -12.49909 -12.37759 -12.33604 -11.96349 -11.94723 -11.88414 -11.42994 -11.06150 -10.81069 -10.59086 -10.44832 -9.86953 -9.45263 -8.99395 -8.26214 -8.17771 -6.11399 -0.15568 0.29167 0.49952 0.83508 1.01591 1.38443 1.42439 1.44810 1.49409 2.40802 2.43472 2.71029 3.11079 3.81476 3.92985 4.09128 4.12111 4.20804 4.39166 4.45700 4.48072 4.66607 4.70408 4.87484 4.88750 4.94838 5.05529 5.12070 5.18414 5.27118 5.28597 5.32022 5.52041 5.54796 5.58103 5.62792 5.74939 5.76505 5.82539 5.98937 6.28216 6.34649 6.94158 7.47030 8.92537 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.003098 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.396176 B = 9036.609679 C = 9285.576005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.253 1.253 6 H -0.291 1.291 7 C -0.497 4.497 8 C 0.011 3.989 9 C -0.102 4.102 10 C 0.168 3.832 11 H 0.090 0.910 12 N -0.650 5.650 13 C 0.579 3.421 14 S -0.696 6.696 15 N -0.621 5.621 16 C 0.119 3.881 17 C -0.070 4.070 18 C -0.114 4.114 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.050 4.050 22 Cl -0.068 7.068 23 C -0.101 4.101 24 C -0.016 4.016 25 H 0.263 0.737 26 H 0.001 0.999 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.414 0.586 31 H 0.421 0.579 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.331 -17.640 -11.570 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.204 1.204 5 H -0.177 1.177 6 H -0.217 1.217 7 C -0.516 4.516 8 C -0.027 4.027 9 C -0.140 4.140 10 C 0.064 3.936 11 H 0.108 0.892 12 N -0.276 5.276 13 C 0.217 3.783 14 S -0.567 6.567 15 N -0.248 5.248 16 C 0.025 3.975 17 C -0.093 4.093 18 C -0.134 4.134 19 C -0.112 4.112 20 C -0.133 4.133 21 C -0.079 4.079 22 Cl -0.039 7.039 23 C -0.140 4.140 24 C -0.054 4.054 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.253 0.747 31 H 0.262 0.738 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 15.612 -17.189 -10.651 25.547 hybrid contribution -1.118 1.181 -1.315 2.092 sum 14.494 -16.008 -11.966 24.688 Atomic orbital electron populations 1.69940 1.07421 1.27463 1.51966 1.25507 0.95288 1.01467 0.94858 0.85910 0.79378 0.80062 0.78580 1.20357 1.17715 1.21710 1.20596 0.90819 0.91987 1.48196 1.19263 0.97324 0.93182 0.92925 1.21747 0.92090 0.99331 1.00839 1.21235 0.93642 0.88319 0.90399 0.89177 1.45334 1.19429 1.41068 1.21738 1.21886 0.85192 0.80237 0.91008 1.93537 1.62648 1.83798 1.16697 1.41966 1.19220 1.42903 1.20761 1.17225 0.85091 0.99324 0.95846 1.21484 0.99583 0.92978 0.95262 1.21410 0.92615 0.98808 1.00566 1.21551 1.00648 0.97587 0.91451 1.21182 0.94022 0.98188 0.99862 1.21014 0.95783 1.03075 0.88054 1.98372 1.94289 1.80331 1.30883 1.21633 0.98369 0.94447 0.99566 1.19657 0.94869 0.96047 0.94866 0.92761 0.98103 0.94553 0.91874 0.92317 0.74709 0.73825 0.84719 0.83168 0.81690 0.82510 0.93207 0.93172 0.94778 0.96561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.23 12.73 21.45 0.27 -52.96 16 2 C 0.03 1.48 5.46 84.66 0.46 1.94 16 3 Si 0.93 43.09 27.54 68.60 1.89 44.98 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.25 -11.09 6.10 99.48 0.61 -10.49 16 6 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.50 -25.55 5.52 -16.17 -0.09 -25.64 16 8 C 0.01 0.53 5.97 30.11 0.18 0.71 16 9 C -0.10 -3.74 5.40 30.66 0.17 -3.57 16 10 C 0.17 5.91 2.12 44.96 0.10 6.00 16 11 H 0.09 3.65 6.82 -2.39 -0.02 3.63 16 12 N -0.65 -17.25 5.08 -329.71 -1.67 -18.93 16 13 C 0.58 16.24 7.81 179.06 1.40 17.64 16 14 S -0.70 -25.78 23.79 -56.49 -1.34 -27.12 16 15 N -0.62 -13.22 4.84 -189.90 -0.92 -14.13 16 16 C 0.12 2.63 5.87 38.16 0.22 2.85 16 17 C -0.07 -1.60 7.88 22.39 0.18 -1.42 16 18 C -0.11 -1.92 10.04 22.25 0.22 -1.70 16 19 C -0.09 -1.22 10.04 22.29 0.22 -1.00 16 20 C -0.11 -1.67 9.82 22.27 0.22 -1.45 16 21 C -0.05 -0.95 6.34 22.44 0.14 -0.81 16 22 Cl -0.07 -1.20 28.22 -2.72 -0.08 -1.28 16 23 C -0.10 -4.01 5.42 30.52 0.17 -3.84 16 24 C -0.02 -0.75 5.56 29.97 0.17 -0.59 16 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.04 1.91 7.07 -2.39 -0.02 1.90 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.41 8.01 8.62 -92.71 -0.80 7.21 16 31 H 0.42 6.42 8.53 -92.70 -0.79 5.63 16 32 H 0.14 3.61 6.31 -4.61 -0.03 3.58 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.05 2.01 7.47 -2.39 -0.02 1.99 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.58 4.59 -2.38 -0.01 1.56 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -66.36 338.37 1.30 -65.06 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.60 Total: 15.25 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.75 Total: -10.86 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -2.32 Total: -86.02 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.89 Total: 44.98 kcal Atomic # 16 Polarization: -25.78 SS G_CDS: -1.34 Total: -27.12 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -66.36 1.30 -65.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200867183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.795 kcal (2) G-P(sol) polarization free energy of solvation -66.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds