Wall clock time and date at job start Tue Mar 31 2020 14:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99728 * 2 1 4 4 H 1.48504 * 109.46904 * 186.42305 * 3 2 1 5 5 H 1.48499 * 109.47234 * 306.42267 * 3 2 1 6 6 H 1.48499 * 109.47238 * 66.42604 * 3 2 1 7 7 C 1.37880 * 119.99921 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85406 * 12.14180 * 7 2 1 9 9 C 1.53224 * 108.54079 * 231.33126 * 8 7 2 10 10 C 1.52956 * 109.40287 * 305.37350 * 9 8 7 11 11 H 1.08996 * 109.35654 * 303.52637 * 10 9 8 12 12 N 1.46506 * 109.41294 * 183.70450 * 10 9 8 13 13 C 1.34773 * 120.00013 * 84.64500 * 12 10 9 14 14 S 1.71200 * 119.99946 * 0.02562 * 13 12 10 15 15 N 1.34772 * 119.99902 * 179.97438 * 13 12 10 16 16 C 1.39949 * 120.00172 * 183.51582 * 15 13 12 17 17 C 1.38859 * 120.07708 * 41.32006 * 16 15 13 18 18 C 1.38113 * 119.94297 * 180.02562 * 17 16 15 19 19 C 1.38298 * 120.09371 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.14699 * 0.02562 * 19 18 17 21 21 C 1.38223 * 120.06315 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.04741 * 179.72293 * 21 20 19 23 23 C 1.52955 * 109.81925 * 63.60118 * 10 9 8 24 24 C 1.51270 * 120.84464 * 192.12810 * 7 2 1 25 25 H 0.96993 * 120.00062 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.62287 * 351.04465 * 8 7 2 27 27 H 1.09000 * 109.62484 * 111.61361 * 8 7 2 28 28 H 1.08994 * 109.48268 * 185.39273 * 9 8 7 29 29 H 1.09008 * 109.48056 * 65.35281 * 9 8 7 30 30 H 0.96999 * 119.99901 * 264.64269 * 12 10 9 31 31 H 0.97003 * 120.00039 * 3.51786 * 15 13 12 32 32 H 1.08002 * 120.02569 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.95580 * 179.97438 * 18 17 16 34 34 H 1.07993 * 119.92507 * 180.02562 * 19 18 17 35 35 H 1.08008 * 119.96971 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.48586 * 56.37661 * 23 10 9 37 37 H 1.09000 * 109.48676 * 176.42715 * 23 10 9 38 38 H 1.08990 * 109.62673 * 8.95490 * 24 7 2 39 39 H 1.08998 * 109.78141 * 248.47456 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7015 1.3508 -0.1566 5 1 1.7767 2.4621 -1.1266 6 1 2.0117 2.3264 1.2832 7 6 2.0046 -1.1941 -0.0005 8 6 1.2930 -2.5006 -0.2743 9 6 1.6409 -3.4885 0.8441 10 6 3.1612 -3.6109 0.9592 11 1 3.5734 -3.9114 -0.0041 12 7 3.4935 -4.6206 1.9673 13 6 3.5363 -5.9240 1.6271 14 16 3.2029 -6.3997 0.0167 15 7 3.8425 -6.8528 2.5545 16 6 3.9592 -8.1978 2.1858 17 6 4.5960 -8.5419 1.0008 18 6 4.7091 -9.8701 0.6395 19 6 4.1895 -10.8577 1.4564 20 6 3.5547 -10.5194 2.6371 21 6 3.4379 -9.1921 3.0049 22 17 2.6344 -8.7674 4.4839 23 6 3.7602 -2.2651 1.3709 24 6 3.4920 -1.2310 0.2723 25 1 -0.4850 0.8400 0.0004 26 1 0.2160 -2.3338 -0.2934 27 1 1.6212 -2.9023 -1.2329 28 1 1.2141 -4.4644 0.6129 29 1 1.2327 -3.1274 1.7882 30 1 3.6828 -4.3511 2.8797 31 1 3.9820 -6.5891 3.4775 32 1 5.0018 -7.7715 0.3619 33 1 5.2040 -10.1379 -0.2823 34 1 4.2799 -11.8954 1.1713 35 1 3.1503 -11.2930 3.2731 36 1 3.3019 -1.9329 2.3024 37 1 4.8354 -2.3739 1.5130 38 1 3.8278 -0.2487 0.6042 39 1 4.0265 -1.5135 -0.6346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200867184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:55 Heat of formation + Delta-G solvation = 29.979465 kcal Electronic energy + Delta-G solvation = -22335.708141 eV Core-core repulsion = 19008.690834 eV Total energy + Delta-G solvation = -3327.017307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31666 -38.70596 -36.82399 -36.66130 -34.34128 -31.89364 -30.96139 -29.81168 -29.59933 -27.34545 -24.51395 -22.95554 -22.51955 -21.98968 -21.43595 -19.76481 -18.65915 -18.06860 -16.71538 -16.17042 -15.94243 -15.58510 -15.02143 -14.47589 -14.42708 -14.20622 -13.91005 -13.59917 -13.23779 -12.88663 -12.31900 -12.25736 -12.13792 -11.84048 -11.68324 -11.64877 -11.20833 -11.10015 -11.01144 -10.90997 -10.85769 -10.33893 -10.04054 -9.84016 -9.58425 -9.05238 -8.95608 -8.82185 -8.46940 -8.36166 -7.58912 -6.86429 -6.15400 -4.03676 0.75605 1.10534 1.61787 1.82048 2.07202 2.61220 3.21516 3.32920 3.33265 3.49310 3.54863 4.33886 4.57834 4.79306 5.00845 5.09935 5.12434 5.24986 5.42364 5.61852 5.71719 5.87370 5.93742 6.02271 6.11909 6.28434 6.32761 6.38210 6.48199 6.57981 6.65967 6.78041 6.87492 6.96958 7.06401 7.19890 7.33294 7.36157 7.61177 7.77250 7.84556 8.35612 8.93740 9.49950 10.93864 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.025818 B = 0.002970 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.254768 B = 9425.512668 C = 9788.376801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.880 3.120 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.495 4.495 8 C 0.016 3.984 9 C -0.111 4.111 10 C 0.148 3.852 11 H 0.110 0.890 12 N -0.660 5.660 13 C 0.555 3.445 14 S -0.617 6.617 15 N -0.643 5.643 16 C 0.150 3.850 17 C -0.061 4.061 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.048 4.048 22 Cl -0.071 7.071 23 C -0.114 4.114 24 C -0.011 4.011 25 H 0.264 0.736 26 H 0.059 0.941 27 H 0.011 0.989 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.393 0.607 31 H 0.405 0.595 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.403 -17.910 8.924 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.707 3.293 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.514 4.514 8 C -0.022 4.022 9 C -0.150 4.150 10 C 0.047 3.953 11 H 0.128 0.872 12 N -0.284 5.284 13 C 0.196 3.804 14 S -0.486 6.486 15 N -0.271 5.271 16 C 0.054 3.946 17 C -0.084 4.084 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.077 4.077 22 Cl -0.042 7.042 23 C -0.152 4.152 24 C -0.049 4.049 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.228 0.772 31 H 0.243 0.757 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.873 -17.855 7.839 21.857 hybrid contribution 0.412 1.501 2.068 2.588 sum 10.285 -16.354 9.908 21.712 Atomic orbital electron populations 1.69888 1.06253 1.26904 1.48853 1.24835 0.94596 0.98548 0.94444 0.86775 0.80902 0.83805 0.77773 1.18523 1.21100 1.21018 1.20027 0.91028 0.92265 1.48034 1.19318 0.99261 0.91628 0.92021 1.21933 0.91682 0.99817 1.01566 1.21808 0.98525 0.84505 0.90511 0.87249 1.45884 1.63866 1.03815 1.14819 1.22425 0.80597 0.83032 0.94338 1.93388 1.70749 1.84489 0.99966 1.42162 1.69195 1.04994 1.10720 1.17085 1.00097 0.80740 0.96658 1.21552 0.95157 0.97656 0.94006 1.21104 0.99983 0.91834 0.99977 1.21136 0.97916 0.99947 0.93735 1.20784 1.00984 0.93353 0.97925 1.20801 1.01698 0.94299 0.90931 1.98369 1.78461 1.93667 1.33718 1.21925 0.97043 0.94745 1.01529 1.19728 0.97455 0.94250 0.93474 0.92593 0.92288 0.97066 0.93337 0.93615 0.77172 0.75673 0.82568 0.84932 0.85108 0.84805 0.92529 0.94333 0.94283 0.96143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.93 12.77 55.43 0.71 -24.23 16 2 C 0.08 2.10 5.44 -17.82 -0.10 2.01 16 3 Si 0.88 20.21 27.67 -169.99 -4.70 15.51 16 4 H -0.26 -5.71 6.02 56.52 0.34 -5.37 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.49 -12.57 5.47 -98.92 -0.54 -13.11 16 8 C 0.02 0.39 5.99 -27.49 -0.16 0.23 16 9 C -0.11 -2.35 5.44 -26.64 -0.14 -2.50 16 10 C 0.15 2.69 2.12 -67.97 -0.14 2.55 16 11 H 0.11 2.22 6.82 -51.93 -0.35 1.87 16 12 N -0.66 -9.43 5.08 -55.57 -0.28 -9.71 16 13 C 0.55 8.24 7.74 -86.93 -0.67 7.57 16 14 S -0.62 -11.57 23.68 -107.50 -2.55 -14.11 16 15 N -0.64 -7.56 4.94 -11.38 -0.06 -7.61 16 16 C 0.15 1.80 5.95 -83.65 -0.50 1.30 16 17 C -0.06 -0.73 7.85 -39.40 -0.31 -1.04 16 18 C -0.11 -1.05 10.04 -39.61 -0.40 -1.45 16 19 C -0.11 -0.91 10.04 -39.55 -0.40 -1.31 16 20 C -0.11 -1.01 9.82 -39.58 -0.39 -1.40 16 21 C -0.05 -0.51 6.34 -39.32 -0.25 -0.76 16 22 Cl -0.07 -0.72 28.10 -51.86 -1.46 -2.18 16 23 C -0.11 -2.06 5.40 -26.63 -0.14 -2.20 16 24 C -0.01 -0.24 5.50 -27.48 -0.15 -0.39 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.06 1.62 7.08 -51.93 -0.37 1.25 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 1.06 7.47 -51.93 -0.39 0.67 16 29 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.39 4.36 8.62 -40.82 -0.35 4.01 16 31 H 0.40 3.70 8.33 -40.82 -0.34 3.36 16 32 H 0.16 2.12 6.09 -45.02 -0.27 1.84 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.84 4.83 -51.93 -0.25 0.59 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -30.03 338.04 -12.45 -42.48 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.91 Total: 5.28 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -4.30 Total: -10.51 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.37 Total: -41.55 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.70 Total: 15.51 kcal Atomic # 16 Polarization: -11.57 SS G_CDS: -2.55 Total: -14.11 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.46 Total: -2.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.03 -12.45 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200867184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.459 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds