Wall clock time and date at job start Tue Mar 31 2020 14:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99728 * 2 1 4 4 H 1.48504 * 109.46904 * 186.42305 * 3 2 1 5 5 H 1.48499 * 109.47234 * 306.42267 * 3 2 1 6 6 H 1.48499 * 109.47238 * 66.42604 * 3 2 1 7 7 C 1.37880 * 119.99921 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85406 * 12.14180 * 7 2 1 9 9 C 1.53224 * 108.54079 * 231.33126 * 8 7 2 10 10 C 1.52956 * 109.40287 * 305.37350 * 9 8 7 11 11 H 1.08996 * 109.35654 * 303.52637 * 10 9 8 12 12 N 1.46506 * 109.41294 * 183.70450 * 10 9 8 13 13 C 1.34773 * 120.00013 * 84.64500 * 12 10 9 14 14 S 1.71200 * 119.99946 * 0.02562 * 13 12 10 15 15 N 1.34772 * 119.99902 * 179.97438 * 13 12 10 16 16 C 1.39949 * 120.00172 * 183.51582 * 15 13 12 17 17 C 1.38859 * 120.07708 * 41.32006 * 16 15 13 18 18 C 1.38113 * 119.94297 * 180.02562 * 17 16 15 19 19 C 1.38298 * 120.09371 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.14699 * 0.02562 * 19 18 17 21 21 C 1.38223 * 120.06315 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.04741 * 179.72293 * 21 20 19 23 23 C 1.52955 * 109.81925 * 63.60118 * 10 9 8 24 24 C 1.51270 * 120.84464 * 192.12810 * 7 2 1 25 25 H 0.96993 * 120.00062 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.62287 * 351.04465 * 8 7 2 27 27 H 1.09000 * 109.62484 * 111.61361 * 8 7 2 28 28 H 1.08994 * 109.48268 * 185.39273 * 9 8 7 29 29 H 1.09008 * 109.48056 * 65.35281 * 9 8 7 30 30 H 0.96999 * 119.99901 * 264.64269 * 12 10 9 31 31 H 0.97003 * 120.00039 * 3.51786 * 15 13 12 32 32 H 1.08002 * 120.02569 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.95580 * 179.97438 * 18 17 16 34 34 H 1.07993 * 119.92507 * 180.02562 * 19 18 17 35 35 H 1.08008 * 119.96971 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.48586 * 56.37661 * 23 10 9 37 37 H 1.09000 * 109.48676 * 176.42715 * 23 10 9 38 38 H 1.08990 * 109.62673 * 8.95490 * 24 7 2 39 39 H 1.08998 * 109.78141 * 248.47456 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7015 1.3508 -0.1566 5 1 1.7767 2.4621 -1.1266 6 1 2.0117 2.3264 1.2832 7 6 2.0046 -1.1941 -0.0005 8 6 1.2930 -2.5006 -0.2743 9 6 1.6409 -3.4885 0.8441 10 6 3.1612 -3.6109 0.9592 11 1 3.5734 -3.9114 -0.0041 12 7 3.4935 -4.6206 1.9673 13 6 3.5363 -5.9240 1.6271 14 16 3.2029 -6.3997 0.0167 15 7 3.8425 -6.8528 2.5545 16 6 3.9592 -8.1978 2.1858 17 6 4.5960 -8.5419 1.0008 18 6 4.7091 -9.8701 0.6395 19 6 4.1895 -10.8577 1.4564 20 6 3.5547 -10.5194 2.6371 21 6 3.4379 -9.1921 3.0049 22 17 2.6344 -8.7674 4.4839 23 6 3.7602 -2.2651 1.3709 24 6 3.4920 -1.2310 0.2723 25 1 -0.4850 0.8400 0.0004 26 1 0.2160 -2.3338 -0.2934 27 1 1.6212 -2.9023 -1.2329 28 1 1.2141 -4.4644 0.6129 29 1 1.2327 -3.1274 1.7882 30 1 3.6828 -4.3511 2.8797 31 1 3.9820 -6.5891 3.4775 32 1 5.0018 -7.7715 0.3619 33 1 5.2040 -10.1379 -0.2823 34 1 4.2799 -11.8954 1.1713 35 1 3.1503 -11.2930 3.2731 36 1 3.3019 -1.9329 2.3024 37 1 4.8354 -2.3739 1.5130 38 1 3.8278 -0.2487 0.6042 39 1 4.0265 -1.5135 -0.6346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200867184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:55 Heat of formation + Delta-G solvation = 13.821983 kcal Electronic energy + Delta-G solvation = -22336.408782 eV Core-core repulsion = 19008.690834 eV Total energy + Delta-G solvation = -3327.717948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30425 -39.95100 -38.09454 -37.50738 -35.79412 -33.65186 -31.74541 -31.49166 -30.76521 -28.93985 -25.70576 -24.21182 -23.70642 -23.23934 -23.03496 -21.38419 -19.73835 -19.24066 -17.99164 -17.58718 -17.08858 -16.55478 -16.37869 -16.30020 -15.42635 -15.24188 -15.05444 -14.73094 -14.68236 -14.33043 -14.10740 -13.81686 -13.49387 -12.96651 -12.82149 -12.77207 -12.67557 -12.50693 -12.39189 -12.32412 -11.96714 -11.92632 -11.81929 -11.35226 -11.20228 -10.80885 -10.55931 -10.41907 -9.86856 -9.41921 -8.98525 -8.24670 -8.16043 -6.08544 -0.20117 0.28984 0.53210 0.84230 1.01335 1.38442 1.42052 1.46905 1.54631 2.41971 2.43263 2.72073 3.11674 3.79850 3.91136 4.09693 4.14593 4.19963 4.39466 4.45758 4.48444 4.68371 4.69209 4.86282 4.90659 4.97969 5.02467 5.11509 5.24216 5.25435 5.27307 5.31672 5.55127 5.55809 5.57930 5.64139 5.73353 5.77991 5.84019 5.98503 6.27108 6.36937 6.96415 7.47848 8.95008 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.025818 B = 0.002970 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.254768 B = 9425.512668 C = 9788.376801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.022 3.978 3 Si 0.939 3.061 4 H -0.238 1.238 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.503 4.503 8 C 0.014 3.986 9 C -0.096 4.096 10 C 0.167 3.833 11 H 0.091 0.909 12 N -0.649 5.649 13 C 0.578 3.422 14 S -0.696 6.696 15 N -0.619 5.619 16 C 0.123 3.877 17 C -0.076 4.076 18 C -0.112 4.112 19 C -0.096 4.096 20 C -0.111 4.111 21 C -0.054 4.054 22 Cl -0.068 7.068 23 C -0.105 4.105 24 C -0.015 4.015 25 H 0.262 0.738 26 H 0.021 0.979 27 H -0.004 1.004 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.415 0.585 31 H 0.421 0.579 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.765 -19.321 10.964 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.161 1.161 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.522 4.522 8 C -0.024 4.024 9 C -0.136 4.136 10 C 0.063 3.937 11 H 0.109 0.891 12 N -0.274 5.274 13 C 0.215 3.785 14 S -0.567 6.567 15 N -0.247 5.247 16 C 0.028 3.972 17 C -0.099 4.099 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.083 4.083 22 Cl -0.039 7.039 23 C -0.143 4.143 24 C -0.053 4.053 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.254 0.746 31 H 0.262 0.738 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 12.284 -19.318 9.947 24.961 hybrid contribution -0.330 1.729 1.453 2.283 sum 11.954 -17.589 11.400 24.129 Atomic orbital electron populations 1.70041 1.08055 1.27483 1.51301 1.25674 0.95225 1.02067 0.94677 0.85823 0.80809 0.79521 0.77377 1.16111 1.21973 1.20664 1.20603 0.93183 0.91946 1.46450 1.19227 0.97047 0.93276 0.92850 1.21671 0.94412 0.97926 0.99554 1.21259 0.95794 0.85744 0.90888 0.89097 1.45333 1.63930 1.02931 1.15210 1.21873 0.79869 0.83410 0.93303 1.93577 1.73942 1.85545 1.03613 1.42010 1.67119 1.04734 1.10796 1.17256 1.01824 0.80627 0.97503 1.21488 0.96023 0.98409 0.93995 1.21394 0.99799 0.91188 1.00830 1.21540 0.95937 1.01309 0.92716 1.21175 1.00327 0.93142 0.98395 1.20946 1.01695 0.94741 0.90930 1.98371 1.78379 1.93733 1.33392 1.21775 0.99444 0.92948 1.00178 1.19753 0.94655 0.96013 0.94918 0.92876 0.96028 0.98598 0.94389 0.94080 0.74612 0.73823 0.84611 0.83196 0.81686 0.82464 0.91757 0.90588 0.93519 0.96106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 12.77 21.45 0.27 -54.21 16 2 C 0.02 1.19 5.44 84.65 0.46 1.65 16 3 Si 0.94 41.41 27.67 68.60 1.90 43.31 16 4 H -0.24 -9.50 6.02 99.48 0.60 -8.91 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.50 -25.79 5.47 -16.17 -0.09 -25.87 16 8 C 0.01 0.74 5.99 30.10 0.18 0.92 16 9 C -0.10 -4.16 5.44 30.65 0.17 -4.00 16 10 C 0.17 5.88 2.12 44.96 0.10 5.97 16 11 H 0.09 3.67 6.82 -2.39 -0.02 3.65 16 12 N -0.65 -17.28 5.08 -329.71 -1.67 -18.95 16 13 C 0.58 16.59 7.74 179.06 1.39 17.98 16 14 S -0.70 -26.64 23.68 -56.49 -1.34 -27.97 16 15 N -0.62 -13.58 4.94 -189.90 -0.94 -14.52 16 16 C 0.12 2.78 5.95 38.17 0.23 3.01 16 17 C -0.08 -1.79 7.85 22.39 0.18 -1.61 16 18 C -0.11 -1.97 10.04 22.25 0.22 -1.74 16 19 C -0.10 -1.31 10.04 22.29 0.22 -1.08 16 20 C -0.11 -1.69 9.82 22.27 0.22 -1.47 16 21 C -0.05 -1.05 6.34 22.44 0.14 -0.91 16 22 Cl -0.07 -1.23 28.10 -2.72 -0.08 -1.31 16 23 C -0.10 -3.51 5.40 30.66 0.17 -3.34 16 24 C -0.02 -0.64 5.50 30.11 0.17 -0.47 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.02 1.24 7.08 -2.39 -0.02 1.23 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.04 1.70 7.47 -2.39 -0.02 1.68 16 29 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.41 7.83 8.62 -92.71 -0.80 7.03 16 31 H 0.42 6.67 8.33 -92.71 -0.77 5.90 16 32 H 0.14 3.75 6.09 -7.66 -0.05 3.71 16 33 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.88 4.83 -2.39 -0.01 1.87 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -68.74 338.04 1.28 -67.45 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.61 Total: 17.18 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 3.74 Total: -10.98 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.34 Total: -87.68 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.90 Total: 43.31 kcal Atomic # 16 Polarization: -26.64 SS G_CDS: -1.34 Total: -27.97 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -68.74 1.28 -67.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200867184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.276 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds