Wall clock time and date at job start Tue Mar 31 2020 14:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99975 * 2 1 4 4 H 1.48504 * 109.46800 * 273.86300 * 3 2 1 5 5 H 1.48500 * 109.47317 * 33.86353 * 3 2 1 6 6 H 1.48501 * 109.47136 * 153.86399 * 3 2 1 7 7 C 1.37878 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99689 * 4.27313 * 7 2 1 9 9 C 1.50695 * 120.00220 * 184.26215 * 7 2 1 10 10 N 1.46504 * 110.01334 * 63.78312 * 9 7 2 11 11 C 1.34782 * 119.99653 * 55.70640 * 10 9 7 12 12 S 1.71195 * 120.00086 * 5.23355 * 11 10 9 13 13 N 1.34772 * 119.99385 * 185.22895 * 11 10 9 14 14 C 1.39948 * 120.00708 * 288.49860 * 13 11 10 15 15 C 1.38861 * 120.07027 * 354.80642 * 14 13 11 16 16 C 1.38120 * 119.94076 * 179.97438 * 15 14 13 17 17 C 1.38296 * 120.09165 * 359.97438 * 16 15 14 18 18 C 1.38266 * 120.15054 * 0.02562 * 17 16 15 19 19 C 1.38227 * 120.05742 * 359.75092 * 18 17 16 20 20 Cl 1.73603 * 120.04626 * 180.27461 * 19 18 17 21 21 C 1.54259 * 110.03362 * 185.17897 * 9 7 2 22 22 C 1.54960 * 104.16366 * 95.75624 * 21 9 7 23 23 C 1.54892 * 102.77834 * 37.88723 * 22 21 9 24 24 C 1.53877 * 110.03141 * 302.39618 * 9 7 2 25 25 H 0.97001 * 119.99748 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99946 * 235.70088 * 10 9 7 27 27 H 0.96998 * 119.99430 * 108.78370 * 13 11 10 28 28 H 1.07996 * 120.03029 * 359.97438 * 15 14 13 29 29 H 1.08004 * 119.95186 * 179.97438 * 16 15 14 30 30 H 1.08000 * 119.92183 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.96984 * 180.02562 * 18 17 16 32 32 H 1.09013 * 110.48407 * 214.40333 * 21 9 7 33 33 H 1.09002 * 110.48686 * 337.04151 * 21 9 7 34 34 H 1.08999 * 110.71841 * 279.57443 * 22 21 9 35 35 H 1.08996 * 110.92842 * 156.29113 * 22 21 9 36 36 H 1.08998 * 110.49070 * 203.41135 * 23 22 21 37 37 H 1.08999 * 110.48855 * 80.76015 * 23 22 21 38 38 H 1.08994 * 110.03194 * 359.94950 * 24 9 7 39 39 H 1.09004 * 110.02876 * 121.37795 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4149 2.0935 -1.3970 5 1 1.4899 2.6277 0.7801 6 1 3.5852 1.4179 0.6167 7 6 2.0046 -1.1941 0.0005 8 1 1.4667 -2.1281 -0.0687 9 6 3.5084 -1.1959 0.0975 10 7 3.9286 -0.6341 1.3837 11 6 3.4656 -1.1633 2.5336 12 16 2.4948 -2.5729 2.4974 13 7 3.7671 -0.5826 3.7119 14 6 5.0690 -0.6629 4.2189 15 6 6.0242 -1.4299 3.5650 16 6 7.3085 -1.5068 4.0675 17 6 7.6443 -0.8207 5.2203 18 6 6.6962 -0.0559 5.8744 19 6 5.4103 0.0292 5.3744 20 17 4.2220 0.9953 6.1920 21 6 4.0458 -2.6341 -0.0519 22 6 4.4145 -2.7471 -1.5528 23 6 4.9964 -1.3469 -1.8689 24 6 4.1121 -0.3777 -1.0574 25 1 -0.4850 0.8401 -0.0004 26 1 4.5400 0.1185 1.4077 27 1 3.0806 -0.1125 4.2105 28 1 5.7632 -1.9658 2.6645 29 1 8.0515 -2.1037 3.5593 30 1 8.6493 -0.8831 5.6110 31 1 6.9617 0.4791 6.7742 32 1 4.9298 -2.7776 0.5698 33 1 3.2740 -3.3587 0.2078 34 1 3.5266 -2.9412 -2.1544 35 1 5.1644 -3.5219 -1.7122 36 1 4.9181 -1.1329 -2.9348 37 1 6.0339 -1.2820 -1.5410 38 1 3.3174 0.0199 -1.6885 39 1 4.7177 0.4373 -0.6609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200871717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:02 Heat of formation + Delta-G solvation = 58.975598 kcal Electronic energy + Delta-G solvation = -23612.063579 eV Core-core repulsion = 20286.303638 eV Total energy + Delta-G solvation = -3325.759941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13040 -38.76859 -36.69846 -36.46786 -33.61397 -32.41380 -30.83178 -29.70056 -28.33646 -27.81080 -24.48003 -23.65704 -22.74554 -21.61187 -20.34636 -19.47282 -18.04903 -17.59960 -17.40565 -16.43495 -15.82275 -15.16974 -14.96231 -14.62883 -14.46567 -14.07334 -13.92770 -13.84892 -13.18286 -12.66190 -12.33830 -12.12381 -12.09121 -11.77193 -11.54801 -11.37337 -11.25596 -11.15062 -10.97190 -10.74246 -10.39354 -10.28352 -10.10486 -9.99042 -9.94126 -9.37747 -9.27061 -8.93877 -8.82073 -7.76517 -6.89825 -6.38746 -6.25049 -4.14912 1.08539 1.23173 1.65137 2.07580 2.74476 2.97072 3.05478 3.18628 3.52223 3.65188 4.12904 4.19722 4.63203 4.84253 5.03937 5.15410 5.22719 5.29168 5.36678 5.39316 5.44826 5.69172 5.94470 6.05477 6.10472 6.11888 6.18803 6.28491 6.33739 6.35646 6.37809 6.51458 6.56574 6.65880 6.93138 6.98777 7.23507 7.26308 7.39941 7.59662 7.95780 8.37565 8.96597 9.29997 10.82707 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.005582 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.404121 B = 5015.127290 C = 5796.188807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.459 4.459 8 H 0.099 0.901 9 C 0.246 3.754 10 N -0.626 5.626 11 C 0.524 3.476 12 S -0.536 6.536 13 N -0.686 5.686 14 C 0.219 3.781 15 C -0.170 4.170 16 C -0.068 4.068 17 C -0.160 4.160 18 C -0.068 4.068 19 C -0.099 4.099 20 Cl -0.070 7.070 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.136 4.136 25 H 0.265 0.735 26 H 0.376 0.624 27 H 0.419 0.581 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.894 1.758 5.948 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.500 4.500 8 H 0.117 0.883 9 C 0.165 3.835 10 N -0.250 5.250 11 C 0.176 3.824 12 S -0.402 6.402 13 N -0.321 5.321 14 C 0.114 3.886 15 C -0.193 4.193 16 C -0.086 4.086 17 C -0.180 4.180 18 C -0.087 4.087 19 C -0.131 4.131 20 Cl -0.042 7.042 21 C -0.141 4.141 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.174 4.174 25 H 0.076 0.924 26 H 0.213 0.787 27 H 0.262 0.738 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.871 0.937 5.622 15.926 hybrid contribution 0.669 2.756 0.470 2.874 sum 15.540 3.693 6.092 17.095 Atomic orbital electron populations 1.69909 1.06088 1.26912 1.47307 1.25107 0.94710 0.98568 0.94817 0.87276 0.79622 0.84782 0.78137 1.20484 1.22204 1.19450 1.21090 0.87120 0.95408 1.46354 0.88310 1.19753 0.96337 0.90583 0.76818 1.48321 1.39795 1.29601 1.07254 1.21677 0.90301 0.90067 0.80379 1.92651 1.41853 1.11613 1.94108 1.42256 1.09183 1.59710 1.20950 1.17641 0.84862 0.94047 0.92077 1.20845 0.93178 1.02415 1.02863 1.21007 0.95343 0.97103 0.95190 1.20908 0.99531 1.00465 0.97134 1.20814 0.90413 0.98075 0.99436 1.20377 0.92092 1.03227 0.97379 1.98356 1.57390 1.70108 1.78316 1.22630 0.99910 0.97649 0.93900 1.22472 1.00069 0.95451 0.97832 1.22271 0.97954 0.96088 0.99171 1.22815 0.98921 0.97558 0.98105 0.92434 0.78663 0.73796 0.84829 0.85284 0.85351 0.84943 0.93987 0.88457 0.90927 0.92727 0.92234 0.92718 0.89896 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.00 13.96 55.43 0.77 -24.23 16 2 C 0.07 1.93 5.36 -17.82 -0.10 1.84 16 3 Si 0.87 19.74 23.89 -169.99 -4.06 15.68 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -5.41 3.94 56.52 0.22 -5.18 16 7 C -0.46 -11.57 6.22 -34.44 -0.21 -11.78 16 8 H 0.10 2.87 7.55 -52.48 -0.40 2.47 16 9 C 0.25 4.99 0.46 -131.86 -0.06 4.93 16 10 N -0.63 -12.00 3.15 -49.34 -0.16 -12.16 16 11 C 0.52 10.51 5.31 -86.92 -0.46 10.05 16 12 S -0.54 -12.72 25.57 -107.50 -2.75 -15.47 16 13 N -0.69 -11.96 5.28 -11.38 -0.06 -12.02 16 14 C 0.22 3.30 6.61 -83.66 -0.55 2.74 16 15 C -0.17 -2.37 9.23 -39.39 -0.36 -2.74 16 16 C -0.07 -0.74 10.04 -39.60 -0.40 -1.14 16 17 C -0.16 -1.58 10.04 -39.55 -0.40 -1.98 16 18 C -0.07 -0.74 9.82 -39.58 -0.39 -1.13 16 19 C -0.10 -1.32 6.34 -39.32 -0.25 -1.57 16 20 Cl -0.07 -0.91 27.61 -51.86 -1.43 -2.34 16 21 C -0.10 -1.90 4.67 -25.04 -0.12 -2.02 16 22 C -0.12 -1.92 6.91 -24.70 -0.17 -2.09 16 23 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 24 C -0.14 -2.47 4.14 -25.61 -0.11 -2.58 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.38 6.65 6.75 -40.82 -0.28 6.37 16 27 H 0.42 7.25 7.51 -40.82 -0.31 6.95 16 28 H 0.13 2.04 6.84 -52.49 -0.36 1.68 16 29 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.04 0.74 8.04 -51.92 -0.42 0.32 16 33 H 0.10 2.08 6.36 -51.93 -0.33 1.75 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.67 5.79 -51.93 -0.30 1.37 16 39 H 0.05 0.80 6.22 -51.93 -0.32 0.48 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -29.15 329.68 -11.44 -40.59 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -4.98 Total: 14.39 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.75 Total: -9.40 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.56 Total: -48.41 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.06 Total: 15.68 kcal Atomic # 16 Polarization: -12.72 SS G_CDS: -2.75 Total: -15.47 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.43 Total: -2.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.15 -11.44 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200871717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.567 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds