Wall clock time and date at job start Tue Mar 31 2020 14:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00706 * 2 1 4 4 H 1.48501 * 109.47360 * 240.00052 * 3 2 1 5 5 H 1.48503 * 109.46768 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47498 * 119.99716 * 3 2 1 7 7 C 1.37886 * 119.99413 * 180.02562 * 2 1 3 8 8 C 1.51277 * 120.84542 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.53164 * 231.32306 * 8 7 2 10 10 C 1.52966 * 109.40445 * 305.37086 * 9 8 7 11 11 H 1.08997 * 109.41471 * 303.56634 * 10 9 8 12 12 N 1.46495 * 109.41069 * 183.70747 * 10 9 8 13 13 C 1.34779 * 120.00376 * 155.00615 * 12 10 9 14 14 S 1.71201 * 119.99152 * 359.97438 * 13 12 10 15 15 N 1.34768 * 120.00661 * 180.02562 * 13 12 10 16 16 C 1.39885 * 120.00272 * 174.46282 * 15 13 12 17 17 C 1.38916 * 120.06346 * 318.02088 * 16 15 13 18 18 C 1.38099 * 119.95266 * 179.76701 * 17 16 15 19 19 C 1.38282 * 120.08423 * 0.48799 * 18 17 16 20 20 C 1.38387 * 120.13045 * 359.78830 * 19 18 17 21 21 Cl 1.73595 * 119.97609 * 179.97438 * 20 19 18 22 22 C 1.38247 * 120.04422 * 359.95929 * 20 19 18 23 23 C 1.52954 * 109.81521 * 63.60431 * 10 9 8 24 24 C 1.51266 * 120.85065 * 359.97438 * 7 2 1 25 25 H 0.97001 * 119.99595 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.62602 * 351.03788 * 8 7 2 27 27 H 1.08999 * 109.62188 * 111.60839 * 8 7 2 28 28 H 1.08999 * 109.48369 * 65.35606 * 9 8 7 29 29 H 1.08998 * 109.47818 * 185.38382 * 9 8 7 30 30 H 0.97010 * 120.00312 * 334.99906 * 12 10 9 31 31 H 0.97006 * 119.99827 * 354.46151 * 15 13 12 32 32 H 1.07999 * 120.02144 * 0.02670 * 17 16 15 33 33 H 1.08000 * 119.95601 * 180.23278 * 18 17 16 34 34 H 1.07999 * 119.93459 * 179.76080 * 19 18 17 35 35 H 1.07995 * 120.04063 * 180.02562 * 22 20 19 36 36 H 1.09003 * 109.48543 * 176.42130 * 23 10 9 37 37 H 1.08996 * 109.48829 * 56.37694 * 23 10 9 38 38 H 1.08996 * 109.62596 * 248.38827 * 24 7 2 39 39 H 1.08996 * 109.62807 * 8.96215 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 6 3.5171 -1.2167 0.0000 9 6 3.9910 -2.1310 -1.1346 10 6 3.3400 -3.5070 -0.9840 11 1 3.5726 -3.9120 0.0009 12 7 3.8603 -4.4073 -2.0159 13 6 3.8530 -5.7398 -1.8138 14 16 3.2362 -6.3802 -0.3508 15 7 4.3320 -6.5681 -2.7629 16 6 4.4320 -7.9399 -2.5085 17 6 4.8969 -8.3875 -1.2783 18 6 4.9901 -9.7424 -1.0279 19 6 4.6308 -10.6540 -2.0037 20 6 4.1727 -10.2120 -3.2324 21 17 3.7235 -11.3599 -4.4547 22 6 4.0723 -8.8569 -3.4870 23 6 1.8231 -3.3824 -1.1357 24 6 1.2675 -2.5152 -0.0005 25 1 -0.4849 0.8401 -0.0004 26 1 3.8982 -0.2080 -0.1591 27 1 3.8771 -1.6008 0.9545 28 1 3.7070 -1.6974 -2.0935 29 1 5.0750 -2.2345 -1.0892 30 1 4.2101 -4.0444 -2.8448 31 1 4.6076 -6.2128 -3.6225 32 1 5.1812 -7.6764 -0.5169 33 1 5.3479 -10.0905 -0.0702 34 1 4.7083 -11.7130 -1.8066 35 1 3.7144 -8.5120 -4.4458 36 1 1.3707 -4.3731 -1.0909 37 1 1.5904 -2.9193 -2.0945 38 1 1.4197 -3.0194 0.9538 39 1 0.2035 -2.3409 -0.1600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201107488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:16 Heat of formation + Delta-G solvation = 27.022965 kcal Electronic energy + Delta-G solvation = -22079.759955 eV Core-core repulsion = 18752.614444 eV Total energy + Delta-G solvation = -3327.145511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32734 -38.75620 -37.11870 -36.33833 -34.32706 -31.92635 -31.04068 -29.84163 -29.63464 -27.37887 -24.46441 -23.13091 -22.48869 -21.99591 -21.46659 -19.81987 -18.64765 -18.14215 -16.56721 -16.16416 -15.98808 -15.64287 -15.01273 -14.68464 -14.50508 -14.19417 -13.88847 -13.64398 -13.25851 -12.95819 -12.32595 -12.25165 -12.12172 -11.84737 -11.74281 -11.59726 -11.17609 -11.16016 -11.01324 -10.90177 -10.79659 -10.45140 -10.07543 -9.87505 -9.76716 -9.08897 -8.97553 -8.84289 -8.53755 -8.42914 -7.61086 -6.90638 -6.15314 -4.07550 0.77218 1.04503 1.56152 1.83998 2.07137 2.61777 3.21773 3.29853 3.30619 3.45645 3.51589 4.31745 4.57613 4.80615 4.96642 5.08447 5.11647 5.21323 5.38985 5.46675 5.66162 5.85270 5.90192 5.97575 6.05814 6.24556 6.27359 6.32983 6.43891 6.51847 6.61336 6.74479 6.84699 6.86621 7.01656 7.15046 7.29637 7.32632 7.56546 7.75514 7.83936 8.32860 8.91362 9.47726 10.94018 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032848 B = 0.002517 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.208826 B =11121.408598 C =11206.232292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.078 3.922 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.494 4.494 8 C -0.005 4.005 9 C -0.115 4.115 10 C 0.148 3.852 11 H 0.110 0.890 12 N -0.661 5.661 13 C 0.553 3.447 14 S -0.615 6.615 15 N -0.646 5.646 16 C 0.154 3.846 17 C -0.066 4.066 18 C -0.100 4.100 19 C -0.110 4.110 20 C -0.031 4.031 21 Cl -0.074 7.074 22 C -0.122 4.122 23 C -0.112 4.112 24 C 0.016 3.984 25 H 0.266 0.734 26 H 0.030 0.970 27 H 0.025 0.975 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.393 0.607 31 H 0.405 0.595 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.012 0.988 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.207 -16.632 -9.266 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.126 4.126 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.513 4.513 8 C -0.043 4.043 9 C -0.154 4.154 10 C 0.047 3.953 11 H 0.128 0.872 12 N -0.285 5.285 13 C 0.194 3.806 14 S -0.485 6.485 15 N -0.274 5.274 16 C 0.059 3.941 17 C -0.089 4.089 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.059 4.059 21 Cl -0.045 7.045 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.022 4.022 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.228 0.772 31 H 0.243 0.757 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.493 -16.855 -8.245 22.004 hybrid contribution 0.829 1.599 -1.936 2.645 sum 12.322 -15.256 -10.182 22.097 Atomic orbital electron populations 1.69826 1.06150 1.27112 1.49194 1.24847 0.94727 0.98479 0.94502 0.86686 0.79450 0.83186 0.78895 1.20140 1.21790 1.19904 1.20042 0.89055 0.91776 1.50413 1.19556 0.97066 0.94262 0.93405 1.21934 0.96861 0.94434 1.02124 1.21795 0.95874 0.87421 0.90250 0.87180 1.45887 1.57888 1.03051 1.21647 1.22462 0.81790 0.84123 0.92193 1.93458 1.62989 1.78106 1.13921 1.42165 1.63490 1.05563 1.16133 1.17127 1.00516 0.80730 0.95709 1.21560 0.94826 0.96711 0.95793 1.20943 0.99994 0.91968 0.99131 1.21076 0.99533 1.00695 0.91630 1.20443 1.04634 0.89570 0.91266 1.98366 1.91423 1.59873 1.54836 1.20660 1.02299 0.90914 1.00493 1.21967 0.91933 0.99693 1.01536 1.19310 0.98566 0.92222 0.92073 0.92427 0.95200 0.95709 0.92525 0.94257 0.77180 0.75729 0.83193 0.84547 0.84959 0.84972 0.93242 0.93691 0.96952 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 12.73 55.43 0.71 -24.29 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.44 26.80 -169.99 -4.56 15.89 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.49 -12.46 5.51 -98.92 -0.55 -13.01 16 8 C 0.00 -0.10 5.59 -27.48 -0.15 -0.26 16 9 C -0.11 -2.03 5.40 -26.63 -0.14 -2.17 16 10 C 0.15 2.61 2.12 -67.97 -0.14 2.47 16 11 H 0.11 2.19 6.82 -51.93 -0.35 1.83 16 12 N -0.66 -8.91 5.08 -55.57 -0.28 -9.19 16 13 C 0.55 7.76 7.71 -86.92 -0.67 7.09 16 14 S -0.62 -11.31 23.86 -107.50 -2.56 -13.88 16 15 N -0.65 -6.73 5.33 -11.41 -0.06 -6.79 16 16 C 0.15 1.70 5.90 -83.71 -0.49 1.21 16 17 C -0.07 -0.77 7.86 -39.38 -0.31 -1.08 16 18 C -0.10 -0.97 10.04 -39.62 -0.40 -1.37 16 19 C -0.11 -1.01 9.83 -39.51 -0.39 -1.40 16 20 C -0.03 -0.31 6.32 -39.52 -0.25 -0.56 16 21 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 22 C -0.12 -1.22 9.75 -39.36 -0.38 -1.60 16 23 C -0.11 -2.32 5.44 -26.61 -0.14 -2.46 16 24 C 0.02 0.40 5.97 -27.46 -0.16 0.24 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.03 0.63 5.17 -51.93 -0.27 0.36 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.39 3.97 8.62 -40.82 -0.35 3.61 16 31 H 0.40 2.80 8.84 -40.82 -0.36 2.44 16 32 H 0.15 1.96 6.27 -50.06 -0.31 1.65 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.05 1.05 7.47 -51.93 -0.39 0.66 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -30.09 340.43 -12.34 -42.43 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.92 Total: 3.81 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -4.29 Total: -10.93 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.36 Total: -40.27 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.56 Total: 15.89 kcal Atomic # 16 Polarization: -11.31 SS G_CDS: -2.56 Total: -13.88 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.09 -12.34 -42.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201107488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.450 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds