Wall clock time and date at job start Tue Mar 31 2020 14:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00706 * 2 1 4 4 H 1.48501 * 109.47360 * 240.00052 * 3 2 1 5 5 H 1.48503 * 109.46768 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47498 * 119.99716 * 3 2 1 7 7 C 1.37886 * 119.99413 * 180.02562 * 2 1 3 8 8 C 1.51277 * 120.84542 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.53164 * 231.32306 * 8 7 2 10 10 C 1.52966 * 109.40445 * 305.37086 * 9 8 7 11 11 H 1.08997 * 109.41471 * 303.56634 * 10 9 8 12 12 N 1.46495 * 109.41069 * 183.70747 * 10 9 8 13 13 C 1.34779 * 120.00376 * 155.00615 * 12 10 9 14 14 S 1.71201 * 119.99152 * 359.97438 * 13 12 10 15 15 N 1.34768 * 120.00661 * 180.02562 * 13 12 10 16 16 C 1.39885 * 120.00272 * 174.46282 * 15 13 12 17 17 C 1.38916 * 120.06346 * 318.02088 * 16 15 13 18 18 C 1.38099 * 119.95266 * 179.76701 * 17 16 15 19 19 C 1.38282 * 120.08423 * 0.48799 * 18 17 16 20 20 C 1.38387 * 120.13045 * 359.78830 * 19 18 17 21 21 Cl 1.73595 * 119.97609 * 179.97438 * 20 19 18 22 22 C 1.38247 * 120.04422 * 359.95929 * 20 19 18 23 23 C 1.52954 * 109.81521 * 63.60431 * 10 9 8 24 24 C 1.51266 * 120.85065 * 359.97438 * 7 2 1 25 25 H 0.97001 * 119.99595 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.62602 * 351.03788 * 8 7 2 27 27 H 1.08999 * 109.62188 * 111.60839 * 8 7 2 28 28 H 1.08999 * 109.48369 * 65.35606 * 9 8 7 29 29 H 1.08998 * 109.47818 * 185.38382 * 9 8 7 30 30 H 0.97010 * 120.00312 * 334.99906 * 12 10 9 31 31 H 0.97006 * 119.99827 * 354.46151 * 15 13 12 32 32 H 1.07999 * 120.02144 * 0.02670 * 17 16 15 33 33 H 1.08000 * 119.95601 * 180.23278 * 18 17 16 34 34 H 1.07999 * 119.93459 * 179.76080 * 19 18 17 35 35 H 1.07995 * 120.04063 * 180.02562 * 22 20 19 36 36 H 1.09003 * 109.48543 * 176.42130 * 23 10 9 37 37 H 1.08996 * 109.48829 * 56.37694 * 23 10 9 38 38 H 1.08996 * 109.62596 * 248.38827 * 24 7 2 39 39 H 1.08996 * 109.62807 * 8.96215 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 6 3.5171 -1.2167 0.0000 9 6 3.9910 -2.1310 -1.1346 10 6 3.3400 -3.5070 -0.9840 11 1 3.5726 -3.9120 0.0009 12 7 3.8603 -4.4073 -2.0159 13 6 3.8530 -5.7398 -1.8138 14 16 3.2362 -6.3802 -0.3508 15 7 4.3320 -6.5681 -2.7629 16 6 4.4320 -7.9399 -2.5085 17 6 4.8969 -8.3875 -1.2783 18 6 4.9901 -9.7424 -1.0279 19 6 4.6308 -10.6540 -2.0037 20 6 4.1727 -10.2120 -3.2324 21 17 3.7235 -11.3599 -4.4547 22 6 4.0723 -8.8569 -3.4870 23 6 1.8231 -3.3824 -1.1357 24 6 1.2675 -2.5152 -0.0005 25 1 -0.4849 0.8401 -0.0004 26 1 3.8982 -0.2080 -0.1591 27 1 3.8771 -1.6008 0.9545 28 1 3.7070 -1.6974 -2.0935 29 1 5.0750 -2.2345 -1.0892 30 1 4.2101 -4.0444 -2.8448 31 1 4.6076 -6.2128 -3.6225 32 1 5.1812 -7.6764 -0.5169 33 1 5.3479 -10.0905 -0.0702 34 1 4.7083 -11.7130 -1.8066 35 1 3.7144 -8.5120 -4.4458 36 1 1.3707 -4.3731 -1.0909 37 1 1.5904 -2.9193 -2.0945 38 1 1.4197 -3.0194 0.9538 39 1 0.2035 -2.3409 -0.1600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201107488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:15 Heat of formation + Delta-G solvation = 10.595771 kcal Electronic energy + Delta-G solvation = -22080.472292 eV Core-core repulsion = 18752.614444 eV Total energy + Delta-G solvation = -3327.857847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28372 -39.95516 -38.24440 -37.28001 -35.71907 -33.64978 -31.85289 -31.49002 -30.75214 -28.95349 -25.63692 -24.25953 -23.74911 -23.25096 -23.01019 -21.39683 -19.68260 -19.26590 -17.95512 -17.49422 -17.03755 -16.57090 -16.40903 -16.28430 -15.55494 -15.38186 -15.00316 -14.69016 -14.60616 -14.34829 -14.06437 -13.88561 -13.46462 -12.92745 -12.85534 -12.78494 -12.55205 -12.49598 -12.43780 -12.22612 -12.06439 -11.90477 -11.83355 -11.51222 -11.15133 -10.78489 -10.54711 -10.48716 -9.87247 -9.47145 -8.97113 -8.25337 -8.15043 -6.11359 -0.17789 0.25687 0.51114 0.86175 1.08743 1.40892 1.43708 1.48596 1.51923 2.41705 2.47755 2.67613 3.13002 3.83806 3.91862 4.09889 4.13891 4.15337 4.25503 4.41460 4.48240 4.63937 4.68544 4.79916 4.90193 4.96491 5.00067 5.08856 5.18684 5.23107 5.24886 5.28107 5.45827 5.56602 5.57873 5.62823 5.72941 5.77585 5.83435 6.00713 6.31508 6.37340 6.95497 7.46968 8.95887 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032848 B = 0.002517 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.208826 B =11121.408598 C =11206.232292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.255 1.255 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.501 4.501 8 C -0.011 4.011 9 C -0.106 4.106 10 C 0.166 3.834 11 H 0.090 0.910 12 N -0.647 5.647 13 C 0.579 3.421 14 S -0.704 6.704 15 N -0.617 5.617 16 C 0.134 3.866 17 C -0.080 4.080 18 C -0.102 4.102 19 C -0.105 4.105 20 C -0.040 4.040 21 Cl -0.066 7.066 22 C -0.117 4.117 23 C -0.097 4.097 24 C 0.015 3.985 25 H 0.262 0.738 26 H 0.038 0.962 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.417 0.583 31 H 0.427 0.573 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.039 0.961 37 H 0.044 0.956 38 H -0.007 1.007 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.990 -17.260 -11.520 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.180 1.180 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.521 4.521 8 C -0.049 4.049 9 C -0.144 4.144 10 C 0.063 3.937 11 H 0.108 0.892 12 N -0.272 5.272 13 C 0.216 3.784 14 S -0.575 6.575 15 N -0.245 5.245 16 C 0.040 3.960 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.068 4.068 21 Cl -0.038 7.038 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.256 0.744 31 H 0.269 0.731 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.011 0.989 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 14.341 -17.524 -10.576 24.992 hybrid contribution -0.032 1.601 -1.266 2.041 sum 14.309 -15.923 -11.842 24.465 Atomic orbital electron populations 1.69996 1.07969 1.27577 1.51776 1.25685 0.95327 1.02014 0.94769 0.85748 0.78282 0.78902 0.79789 1.18000 1.22630 1.19194 1.20641 0.91422 0.91456 1.48539 1.19587 0.94317 0.95870 0.95104 1.21775 0.98990 0.92905 1.00735 1.21230 0.93585 0.88410 0.90506 0.89216 1.45290 1.57774 1.02306 1.21856 1.21834 0.80980 0.84287 0.91277 1.93702 1.66588 1.79348 1.17890 1.41951 1.61320 1.05199 1.16042 1.17242 1.01866 0.80809 0.96108 1.21533 0.95659 0.97336 0.95675 1.21171 0.99583 0.91353 1.00086 1.21351 0.98189 1.01748 0.91101 1.20612 1.04616 0.89811 0.91752 1.98372 1.91350 1.59520 1.54516 1.20799 1.01493 0.90817 1.00752 1.21695 0.94437 0.98028 0.99500 1.19213 0.96846 0.93478 0.92816 0.92844 0.94360 0.95818 0.91530 0.90460 0.74361 0.73087 0.85009 0.82821 0.82838 0.83284 0.94225 0.93699 0.98888 0.95952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 12.73 21.45 0.27 -54.41 16 2 C 0.02 1.09 5.46 84.66 0.46 1.55 16 3 Si 0.95 41.63 26.80 68.60 1.84 43.47 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.50 -25.50 5.51 -16.17 -0.09 -25.59 16 8 C -0.01 -0.44 5.59 30.11 0.17 -0.27 16 9 C -0.11 -3.38 5.40 30.66 0.17 -3.22 16 10 C 0.17 5.61 2.12 44.97 0.10 5.70 16 11 H 0.09 3.52 6.82 -2.39 -0.02 3.50 16 12 N -0.65 -15.63 5.08 -329.71 -1.67 -17.30 16 13 C 0.58 15.22 7.71 179.06 1.38 16.60 16 14 S -0.70 -26.22 23.86 -56.49 -1.35 -27.57 16 15 N -0.62 -11.25 5.33 -190.00 -1.01 -12.26 16 16 C 0.13 2.71 5.90 38.16 0.23 2.94 16 17 C -0.08 -1.77 7.86 22.40 0.18 -1.60 16 18 C -0.10 -1.83 10.04 22.25 0.22 -1.61 16 19 C -0.10 -1.69 9.83 22.32 0.22 -1.47 16 20 C -0.04 -0.70 6.32 22.31 0.14 -0.56 16 21 Cl -0.07 -1.07 28.95 -2.72 -0.08 -1.15 16 22 C -0.12 -2.05 9.75 22.42 0.22 -1.83 16 23 C -0.10 -4.05 5.44 30.67 0.17 -3.88 16 24 C 0.01 0.75 5.97 30.12 0.18 0.93 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.04 1.51 5.17 -2.39 -0.01 1.50 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.42 6.58 8.62 -92.70 -0.80 5.78 16 31 H 0.43 4.24 8.84 -92.70 -0.82 3.42 16 32 H 0.13 3.47 6.27 -4.46 -0.03 3.44 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.04 1.71 7.47 -2.39 -0.02 1.69 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.02 1.28 7.07 -2.39 -0.02 1.26 16 Total: -1.00 -69.01 340.43 1.20 -67.81 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -0.53 Total: 13.72 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.73 Total: -12.31 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.41 Total: -83.97 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.84 Total: 43.47 kcal Atomic # 16 Polarization: -26.22 SS G_CDS: -1.35 Total: -27.57 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -69.01 1.20 -67.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201107488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.403 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds