Wall clock time and date at job start Tue Mar 31 2020 14:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48494 * 109.47069 * 269.99625 * 3 2 1 5 5 H 1.48503 * 109.47157 * 29.99964 * 3 2 1 6 6 H 1.48501 * 109.46992 * 149.99574 * 3 2 1 7 7 C 1.37874 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00415 * 184.96719 * 7 2 1 9 9 C 1.50704 * 119.99810 * 4.97304 * 7 2 1 10 10 N 1.46506 * 110.43553 * 62.32796 * 9 7 2 11 11 C 1.34775 * 119.99848 * 57.24290 * 10 9 7 12 12 S 1.71199 * 120.00179 * 4.90504 * 11 10 9 13 13 N 1.34774 * 120.00134 * 184.90204 * 11 10 9 14 14 C 1.39886 * 119.99769 * 280.96473 * 13 11 10 15 15 C 1.38913 * 120.06987 * 4.71990 * 14 13 11 16 16 C 1.38088 * 119.95681 * 179.72487 * 15 14 13 17 17 C 1.38284 * 120.08441 * 0.58146 * 16 15 14 18 18 C 1.38382 * 120.13194 * 359.69355 * 17 16 15 19 19 Cl 1.73598 * 119.98086 * 180.02562 * 18 17 16 20 20 C 1.38254 * 120.04266 * 0.02562 * 18 17 16 21 21 C 1.54891 * 110.59841 * 299.70903 * 9 7 2 22 22 C 1.54888 * 102.75005 * 203.32242 * 21 9 7 23 23 C 1.54272 * 104.19311 * 37.94411 * 22 21 9 24 24 C 1.53875 * 106.60014 * 336.38997 * 23 22 21 25 25 H 0.97006 * 120.00311 * 5.00248 * 1 2 3 26 26 H 0.96993 * 119.99552 * 237.24594 * 10 9 7 27 27 H 0.96997 * 120.00470 * 100.95745 * 13 11 10 28 28 H 1.07999 * 120.01537 * 0.02836 * 15 14 13 29 29 H 1.08003 * 119.95821 * 180.27494 * 16 15 14 30 30 H 1.08006 * 119.93832 * 179.72311 * 17 16 15 31 31 H 1.08000 * 120.04089 * 180.02562 * 20 18 17 32 32 H 1.09004 * 110.75427 * 85.00881 * 21 9 7 33 33 H 1.08997 * 110.75555 * 321.64117 * 21 9 7 34 34 H 1.09001 * 110.48860 * 279.26715 * 22 21 9 35 35 H 1.08998 * 110.48762 * 156.61578 * 22 21 9 36 36 H 1.08996 * 110.03046 * 95.66966 * 23 22 21 37 37 H 1.08999 * 110.03096 * 217.05536 * 23 22 21 38 38 H 1.08998 * 110.03677 * 119.28218 * 24 23 22 39 39 H 1.09002 * 110.03407 * 240.71664 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1958 0.0815 9 6 1.2553 -2.4967 -0.1120 10 7 0.5411 -2.5674 -1.3893 11 6 1.2187 -2.4445 -2.5478 12 16 2.9269 -2.3320 -2.5327 13 7 0.5515 -2.4103 -3.7183 14 6 0.0844 -3.5975 -4.2921 15 6 0.2205 -4.8004 -3.6108 16 6 -0.2465 -5.9702 -4.1768 17 6 -0.8387 -5.9474 -5.4263 18 6 -0.9711 -4.7520 -6.1106 19 17 -1.7157 -4.7278 -7.6786 20 6 -0.5106 -3.5768 -5.5464 21 6 0.2687 -2.6619 1.0706 22 6 0.0730 -4.1967 1.1407 23 6 1.4706 -4.7709 0.8291 24 6 2.2223 -3.6900 0.0326 25 1 -0.4851 0.8369 -0.0733 26 1 -0.4193 -2.7025 -1.4010 27 1 0.3951 -1.5625 -4.1629 28 1 0.6869 -4.8199 -2.6369 29 1 -0.1447 -6.9048 -3.6452 30 1 -1.1992 -6.8644 -5.8687 31 1 -0.6142 -2.6437 -6.0804 32 1 -0.6761 -2.1613 0.8582 33 1 0.7072 -2.2857 1.9948 34 1 -0.6492 -4.5239 0.3927 35 1 -0.2481 -4.4952 2.1387 36 1 2.0006 -4.9874 1.7566 37 1 1.3770 -5.6781 0.2323 38 1 3.1171 -3.3819 0.5736 39 1 2.4935 -4.0722 -0.9515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201114477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:42 Heat of formation + Delta-G solvation = 39.483669 kcal Electronic energy + Delta-G solvation = -23315.074362 eV Core-core repulsion = 19988.469188 eV Total energy + Delta-G solvation = -3326.605174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99295 -38.56437 -36.93438 -36.05305 -33.39550 -32.41411 -30.77816 -29.49555 -28.02107 -27.65042 -24.43576 -23.62279 -22.82879 -21.42856 -19.99863 -19.32407 -17.91242 -17.48829 -17.33587 -16.18138 -15.69663 -15.02428 -14.79490 -14.70334 -14.46571 -14.02611 -13.71003 -13.67612 -13.27593 -12.60605 -12.13215 -11.93244 -11.88749 -11.59113 -11.40813 -11.12094 -11.01875 -10.98188 -10.90871 -10.61353 -10.50184 -10.35506 -10.18359 -9.92389 -9.77472 -9.47560 -9.14382 -8.85910 -8.66761 -7.70727 -6.85754 -6.39426 -6.25935 -4.22243 1.16464 1.36398 1.68161 2.03983 2.85479 3.24172 3.31070 3.37884 3.60154 3.73719 4.30309 4.33859 4.76723 5.05802 5.11071 5.14371 5.36230 5.43588 5.48309 5.50618 5.56804 5.68673 6.09088 6.21385 6.22048 6.26194 6.37825 6.39708 6.46501 6.51934 6.60763 6.62451 6.78068 7.03755 7.12382 7.14620 7.34106 7.44331 7.60716 7.75295 8.01423 8.22790 8.78983 9.34052 10.74359 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.004292 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.758042 B = 6522.502477 C = 7407.543300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.275 3.725 10 N -0.579 5.579 11 C 0.543 3.457 12 S -0.588 6.588 13 N -0.692 5.692 14 C 0.228 3.772 15 C -0.177 4.177 16 C -0.060 4.060 17 C -0.164 4.164 18 C 0.010 3.990 19 Cl -0.076 7.076 20 C -0.174 4.174 21 C -0.098 4.098 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.118 4.118 25 H 0.262 0.738 26 H 0.380 0.620 27 H 0.418 0.582 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -9.941 -6.243 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.504 4.504 8 H 0.096 0.904 9 C 0.194 3.806 10 N -0.194 5.194 11 C 0.189 3.811 12 S -0.455 6.455 13 N -0.327 5.327 14 C 0.124 3.876 15 C -0.199 4.199 16 C -0.079 4.079 17 C -0.185 4.185 18 C -0.017 4.017 19 Cl -0.047 7.047 20 C -0.198 4.198 21 C -0.137 4.137 22 C -0.174 4.174 23 C -0.166 4.166 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.216 0.784 27 H 0.259 0.741 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.150 -9.735 -5.882 12.486 hybrid contribution -1.198 1.404 -0.527 1.919 sum -6.349 -8.331 -6.410 12.280 Atomic orbital electron populations 1.69915 1.05953 1.27493 1.49315 1.25004 0.94884 0.99611 0.94213 0.86458 0.80072 0.82574 0.78428 1.20521 1.21616 1.19389 1.21242 0.94358 0.88464 1.46359 0.90434 1.19466 0.88953 0.94739 0.77469 1.47475 1.10457 1.54431 1.07019 1.21585 0.94238 0.84724 0.80536 1.92654 0.93507 1.64608 1.94746 1.42019 1.60801 1.07744 1.22097 1.17628 0.92155 0.86269 0.91556 1.20925 1.05659 0.91426 1.01932 1.20819 0.95282 0.97734 0.94073 1.20807 1.05025 0.96604 0.96038 1.20514 0.99165 0.94709 0.87336 1.98359 1.80991 1.98913 1.26478 1.20359 1.05952 0.98152 0.95305 1.22596 1.00632 0.91697 0.98757 1.22565 0.96514 0.98466 0.99820 1.22255 0.96335 0.98320 0.99653 1.22545 0.98532 0.94303 1.00345 0.92800 0.78449 0.74114 0.85287 0.85018 0.85295 0.84856 0.90362 0.90793 0.93258 0.92831 0.92705 0.93508 0.90906 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.77 11.49 55.43 0.64 -21.13 16 2 C 0.07 1.64 5.29 -17.82 -0.09 1.55 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.46 -11.29 5.79 -34.44 -0.20 -11.49 16 8 H 0.08 2.04 7.50 -52.49 -0.39 1.65 16 9 C 0.27 5.67 0.32 -131.30 -0.04 5.63 16 10 N -0.58 -11.12 4.44 -48.82 -0.22 -11.34 16 11 C 0.54 10.65 5.14 -86.92 -0.45 10.20 16 12 S -0.59 -13.68 25.56 -107.50 -2.75 -16.43 16 13 N -0.69 -11.39 5.34 -11.41 -0.06 -11.45 16 14 C 0.23 3.35 6.61 -83.71 -0.55 2.80 16 15 C -0.18 -2.52 9.29 -39.39 -0.37 -2.89 16 16 C -0.06 -0.71 10.04 -39.62 -0.40 -1.11 16 17 C -0.16 -1.86 9.83 -39.51 -0.39 -2.24 16 18 C 0.01 0.12 6.32 -39.52 -0.25 -0.13 16 19 Cl -0.08 -0.84 28.95 -51.86 -1.50 -2.34 16 20 C -0.17 -2.26 9.68 -39.35 -0.38 -2.64 16 21 C -0.10 -1.89 5.02 -24.74 -0.12 -2.02 16 22 C -0.14 -2.15 6.79 -25.07 -0.17 -2.32 16 23 C -0.13 -2.04 6.80 -25.61 -0.17 -2.21 16 24 C -0.12 -2.27 5.17 -25.61 -0.13 -2.40 16 25 H 0.26 6.38 8.32 -40.82 -0.34 6.04 16 26 H 0.38 6.92 8.60 -40.82 -0.35 6.57 16 27 H 0.42 6.38 8.82 -40.82 -0.36 6.02 16 28 H 0.13 2.02 6.79 -52.49 -0.36 1.66 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.08 1.62 7.18 -51.93 -0.37 1.25 16 33 H 0.07 1.52 8.05 -51.93 -0.42 1.10 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.49 7.69 -51.93 -0.40 1.09 16 39 H 0.07 1.52 5.85 -51.81 -0.30 1.21 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -26.37 344.26 -12.49 -38.86 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.05 Total: 12.20 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -3.72 Total: -9.27 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.36 Total: -43.92 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -13.68 SS G_CDS: -2.75 Total: -16.43 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.37 -12.49 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201114477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.346 kcal (2) G-P(sol) polarization free energy of solvation -26.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds