Wall clock time and date at job start Tue Mar 31 2020 14:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86806 * 120.00061 * 2 1 4 4 H 1.48497 * 109.46824 * 268.36192 * 3 2 1 5 5 H 1.48503 * 109.47061 * 28.36134 * 3 2 1 6 6 H 1.48497 * 109.47287 * 148.35900 * 3 2 1 7 7 C 1.39907 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 335.87323 * 7 2 1 9 9 C 1.41294 * 120.00342 * 155.87081 * 7 2 1 10 10 C 1.40621 * 120.22509 * 328.87144 * 9 7 2 11 11 C 1.38189 * 119.70325 * 179.97438 * 10 9 7 12 12 N 1.39789 * 119.91521 * 179.97438 * 11 10 9 13 13 C 1.39985 * 120.00170 * 149.95936 * 12 11 10 14 14 C 1.39406 * 120.42770 * 331.25266 * 13 12 11 15 15 C 1.38322 * 118.42297 * 180.02562 * 14 13 12 16 16 C 1.38902 * 119.18968 * 359.97438 * 15 14 13 17 17 O 1.35778 * 119.60411 * 180.02562 * 16 15 14 18 18 C 1.42894 * 116.99630 * 179.97438 * 17 16 15 19 19 F 1.39897 * 109.47832 * 299.99850 * 18 17 16 20 20 F 1.39902 * 109.47525 * 60.00442 * 18 17 16 21 21 N 1.32204 * 120.79301 * 0.02562 * 16 15 14 22 22 C 1.31953 * 121.72202 * 0.02562 * 21 16 15 23 23 C 1.39440 * 120.16933 * 0.25212 * 11 10 9 24 24 C 1.38351 * 120.45995 * 359.48767 * 23 11 10 25 25 C 1.38014 * 120.29269 * 0.51199 * 24 23 11 26 26 F 1.35097 * 120.09048 * 179.72138 * 25 24 23 27 27 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.14887 * 359.97438 * 10 9 7 29 29 H 0.97004 * 120.00012 * 329.95061 * 12 11 10 30 30 H 1.08000 * 120.79160 * 0.05056 * 14 13 12 31 31 H 1.07997 * 120.40747 * 180.02562 * 15 14 13 32 32 H 1.09001 * 109.46764 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.62897 * 180.02562 * 22 21 16 34 34 H 1.07998 * 119.76670 * 179.71868 * 23 11 10 35 35 H 1.08001 * 119.85179 * 180.23305 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.5247 2.0264 -1.3995 5 1 1.4231 2.6625 0.6651 6 1 3.5224 1.4505 0.7344 7 6 2.0082 -1.2116 0.0005 8 1 1.5390 -2.1059 0.3833 9 6 3.3285 -1.2653 -0.4996 10 6 3.7283 -0.4036 -1.5365 11 6 5.0225 -0.4649 -2.0171 12 7 5.4245 0.3892 -3.0481 13 6 6.7577 0.8078 -3.1305 14 6 7.5366 0.9149 -1.9793 15 6 8.8487 1.3329 -2.1087 16 6 9.3438 1.6296 -3.3721 17 8 10.6308 2.0402 -3.5088 18 6 11.0819 2.3298 -4.8334 19 9 10.9670 1.1831 -5.6265 20 9 10.3007 3.3542 -5.3787 21 7 8.5769 1.5170 -4.4431 22 6 7.3206 1.1223 -4.3585 23 6 5.9267 -1.3806 -1.4803 24 6 5.5423 -2.2280 -0.4565 25 6 4.2545 -2.1830 0.0380 26 9 3.8819 -3.0162 1.0340 27 1 -0.4850 0.8400 0.0004 28 1 3.0271 0.3030 -1.9553 29 1 4.7795 0.6918 -3.7065 30 1 7.1253 0.6767 -1.0095 31 1 9.4809 1.4267 -1.2381 32 1 12.1244 2.6465 -4.8009 33 1 6.7247 1.0418 -5.2556 34 1 6.9352 -1.4261 -1.8640 35 1 6.2518 -2.9309 -0.0454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210303935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:18 Heat of formation + Delta-G solvation = -130.330417 kcal Electronic energy + Delta-G solvation = -26243.932315 eV Core-core repulsion = 21791.953593 eV Total energy + Delta-G solvation = -4451.978722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11934 -47.40873 -47.24653 -40.67346 -38.75980 -37.56606 -35.15300 -33.62723 -32.25031 -30.66951 -30.05236 -27.57922 -25.98426 -25.47622 -23.70823 -22.69400 -21.92519 -20.41382 -19.22491 -18.43535 -17.90412 -17.89669 -17.16297 -16.56121 -16.51982 -15.88991 -15.42413 -15.08481 -14.83104 -14.72750 -14.40517 -14.19285 -13.96831 -13.57794 -13.42335 -13.36615 -13.15164 -12.91733 -12.83367 -12.70824 -12.31114 -12.16177 -11.98973 -11.92529 -11.64889 -10.93623 -10.89828 -10.37399 -10.23069 -9.97239 -9.75229 -9.47695 -9.26294 -8.22539 -7.96370 -7.18607 -6.76734 -4.68798 1.10684 1.25914 2.33085 2.37342 2.42715 2.96812 3.06178 3.16432 3.41887 3.57533 3.74678 3.80685 4.15723 4.24096 4.42074 4.64286 4.86457 4.96695 5.07485 5.11470 5.56462 5.61125 5.63340 5.77112 6.07021 6.09006 6.22894 6.37291 6.45860 6.70545 6.81676 6.94951 7.13972 7.22713 7.46336 7.56542 7.76892 7.92666 7.94157 8.17321 8.41695 8.54419 9.82737 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.003149 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.532732 B = 8890.698332 C = 9619.515215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.089 3.911 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.438 4.438 8 H 0.098 0.902 9 C 0.089 3.911 10 C -0.258 4.258 11 C 0.196 3.804 12 N -0.679 5.679 13 C 0.137 3.863 14 C -0.091 4.091 15 C -0.135 4.135 16 C 0.249 3.751 17 O -0.321 6.321 18 C 0.425 3.575 19 F -0.196 7.196 20 F -0.196 7.196 21 N -0.493 5.493 22 C 0.079 3.921 23 C -0.259 4.259 24 C -0.088 4.088 25 C -0.028 4.028 26 F -0.157 7.157 27 H 0.289 0.711 28 H 0.114 0.886 29 H 0.407 0.593 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.105 0.895 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.438 6.344 -6.870 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.133 4.133 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.465 4.465 8 H 0.116 0.884 9 C 0.084 3.916 10 C -0.280 4.280 11 C 0.101 3.899 12 N -0.303 5.303 13 C 0.034 3.966 14 C -0.120 4.120 15 C -0.156 4.156 16 C 0.070 3.930 17 O -0.234 6.234 18 C 0.334 3.666 19 F -0.178 7.178 20 F -0.178 7.178 21 N -0.213 5.213 22 C -0.082 4.082 23 C -0.281 4.281 24 C -0.107 4.107 25 C -0.049 4.049 26 F -0.136 7.136 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.244 0.756 30 H 0.171 0.829 31 H 0.161 0.839 32 H 0.188 0.812 33 H 0.177 0.823 34 H 0.123 0.877 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.671 6.575 -7.382 19.381 hybrid contribution -0.602 0.476 0.339 0.839 sum 16.069 7.052 -7.043 18.909 Atomic orbital electron populations 1.69746 1.08297 1.30807 1.32197 1.26179 0.94613 1.01852 0.90649 0.86334 0.80869 0.79434 0.79738 1.18955 1.21255 1.17166 1.19399 0.95134 0.97311 1.34626 0.88447 1.17423 0.92538 0.90635 0.90983 1.20606 0.95758 1.08642 1.03013 1.17454 0.93751 0.89777 0.88887 1.42080 1.06249 1.50804 1.31123 1.18718 0.86642 0.97181 0.94068 1.21442 0.92967 0.98446 0.99179 1.20883 0.96006 1.03021 0.95706 1.19355 0.84011 0.98895 0.90747 1.86748 1.25706 1.81541 1.29411 1.23019 0.94030 0.74410 0.75104 1.93096 1.97135 1.52344 1.75178 1.93094 1.78767 1.59769 1.86192 1.67147 1.06735 1.16309 1.31103 1.21991 0.89692 1.00627 0.95865 1.19948 0.99517 1.03037 1.05586 1.20396 0.94296 0.99015 0.97039 1.17759 0.93503 0.99739 0.93866 1.91308 1.92300 1.70388 1.59650 0.90025 0.86819 0.75637 0.82912 0.83878 0.81151 0.82325 0.87651 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.88 13.93 55.55 0.77 -19.10 16 2 C 0.09 2.20 5.30 -17.34 -0.09 2.11 16 3 Si 0.91 19.49 25.14 -169.99 -4.27 15.21 16 4 H -0.26 -5.38 6.40 56.52 0.36 -5.02 16 5 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.25 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.44 -11.41 9.19 -37.80 -0.35 -11.76 16 8 H 0.10 2.73 7.99 -52.49 -0.42 2.31 16 9 C 0.09 2.14 5.02 -106.78 -0.54 1.61 16 10 C -0.26 -5.61 7.33 -38.70 -0.28 -5.89 16 11 C 0.20 3.76 5.95 -83.80 -0.50 3.26 16 12 N -0.68 -10.71 5.47 -8.31 -0.05 -10.76 16 13 C 0.14 2.01 5.97 -83.53 -0.50 1.51 16 14 C -0.09 -1.31 7.99 -39.12 -0.31 -1.62 16 15 C -0.14 -1.75 10.03 -39.30 -0.39 -2.14 16 16 C 0.25 3.48 7.19 -17.15 -0.12 3.35 16 17 O -0.32 -3.83 10.41 -19.05 -0.20 -4.02 16 18 C 0.42 4.12 6.05 101.05 0.61 4.74 16 19 F -0.20 -2.37 16.57 2.25 0.04 -2.33 16 20 F -0.20 -2.35 16.57 2.25 0.04 -2.32 16 21 N -0.49 -7.28 8.06 -13.16 -0.11 -7.38 16 22 C 0.08 1.08 11.10 -17.33 -0.19 0.89 16 23 C -0.26 -4.87 7.89 -39.09 -0.31 -5.18 16 24 C -0.09 -1.75 10.00 -39.62 -0.40 -2.15 16 25 C -0.03 -0.65 7.31 -38.61 -0.28 -0.93 16 26 F -0.16 -3.73 16.78 2.25 0.04 -3.69 16 27 H 0.29 6.54 8.30 -40.82 -0.34 6.20 16 28 H 0.11 2.46 5.17 -52.49 -0.27 2.19 16 29 H 0.41 5.60 8.90 -40.82 -0.36 5.24 16 30 H 0.15 2.28 6.64 -52.49 -0.35 1.93 16 31 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.17 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.11 1.82 6.57 -52.49 -0.34 1.47 16 35 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 315.74 15.07 4.76 4.76 Total: -1.00 -28.62 315.74 -5.24 -33.86 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.61 Total: 7.98 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -3.65 Total: -12.21 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.62 Total: -37.24 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.20 Total: -4.02 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.11 Total: -8.34 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.27 Total: 15.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.62 -5.24 -33.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210303935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.466 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds