Wall clock time and date at job start Tue Mar 31 2020 14:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86806 * 120.00061 * 2 1 4 4 H 1.48497 * 109.46824 * 268.36192 * 3 2 1 5 5 H 1.48503 * 109.47061 * 28.36134 * 3 2 1 6 6 H 1.48497 * 109.47287 * 148.35900 * 3 2 1 7 7 C 1.39907 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 335.87323 * 7 2 1 9 9 C 1.41294 * 120.00342 * 155.87081 * 7 2 1 10 10 C 1.40621 * 120.22509 * 328.87144 * 9 7 2 11 11 C 1.38189 * 119.70325 * 179.97438 * 10 9 7 12 12 N 1.39789 * 119.91521 * 179.97438 * 11 10 9 13 13 C 1.39985 * 120.00170 * 149.95936 * 12 11 10 14 14 C 1.39406 * 120.42770 * 331.25266 * 13 12 11 15 15 C 1.38322 * 118.42297 * 180.02562 * 14 13 12 16 16 C 1.38902 * 119.18968 * 359.97438 * 15 14 13 17 17 O 1.35778 * 119.60411 * 180.02562 * 16 15 14 18 18 C 1.42894 * 116.99630 * 179.97438 * 17 16 15 19 19 F 1.39897 * 109.47832 * 299.99850 * 18 17 16 20 20 F 1.39902 * 109.47525 * 60.00442 * 18 17 16 21 21 N 1.32204 * 120.79301 * 0.02562 * 16 15 14 22 22 C 1.31953 * 121.72202 * 0.02562 * 21 16 15 23 23 C 1.39440 * 120.16933 * 0.25212 * 11 10 9 24 24 C 1.38351 * 120.45995 * 359.48767 * 23 11 10 25 25 C 1.38014 * 120.29269 * 0.51199 * 24 23 11 26 26 F 1.35097 * 120.09048 * 179.72138 * 25 24 23 27 27 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.14887 * 359.97438 * 10 9 7 29 29 H 0.97004 * 120.00012 * 329.95061 * 12 11 10 30 30 H 1.08000 * 120.79160 * 0.05056 * 14 13 12 31 31 H 1.07997 * 120.40747 * 180.02562 * 15 14 13 32 32 H 1.09001 * 109.46764 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.62897 * 180.02562 * 22 21 16 34 34 H 1.07998 * 119.76670 * 179.71868 * 23 11 10 35 35 H 1.08001 * 119.85179 * 180.23305 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.5247 2.0264 -1.3995 5 1 1.4231 2.6625 0.6651 6 1 3.5224 1.4505 0.7344 7 6 2.0082 -1.2116 0.0005 8 1 1.5390 -2.1059 0.3833 9 6 3.3285 -1.2653 -0.4996 10 6 3.7283 -0.4036 -1.5365 11 6 5.0225 -0.4649 -2.0171 12 7 5.4245 0.3892 -3.0481 13 6 6.7577 0.8078 -3.1305 14 6 7.5366 0.9149 -1.9793 15 6 8.8487 1.3329 -2.1087 16 6 9.3438 1.6296 -3.3721 17 8 10.6308 2.0402 -3.5088 18 6 11.0819 2.3298 -4.8334 19 9 10.9670 1.1831 -5.6265 20 9 10.3007 3.3542 -5.3787 21 7 8.5769 1.5170 -4.4431 22 6 7.3206 1.1223 -4.3585 23 6 5.9267 -1.3806 -1.4803 24 6 5.5423 -2.2280 -0.4565 25 6 4.2545 -2.1830 0.0380 26 9 3.8819 -3.0162 1.0340 27 1 -0.4850 0.8400 0.0004 28 1 3.0271 0.3030 -1.9553 29 1 4.7795 0.6918 -3.7065 30 1 7.1253 0.6767 -1.0095 31 1 9.4809 1.4267 -1.2381 32 1 12.1244 2.6465 -4.8009 33 1 6.7247 1.0418 -5.2556 34 1 6.9352 -1.4261 -1.8640 35 1 6.2518 -2.9309 -0.0454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210303935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:17 Heat of formation + Delta-G solvation = -148.934293 kcal Electronic energy + Delta-G solvation = -26244.739039 eV Core-core repulsion = 21791.953593 eV Total energy + Delta-G solvation = -4452.785446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.93986 -49.21537 -48.08481 -41.75756 -40.09612 -38.77556 -36.58367 -35.33640 -33.33192 -32.39929 -31.35018 -28.87706 -27.24935 -26.90128 -24.83015 -23.83507 -23.54015 -21.97014 -20.18200 -19.58935 -19.32245 -18.73599 -18.42217 -18.19986 -17.77926 -17.17786 -16.76787 -16.50320 -16.23317 -16.01650 -15.94863 -15.38468 -15.11550 -14.83280 -14.64739 -14.51313 -14.43325 -14.16519 -13.97869 -13.88273 -13.82561 -13.59028 -13.45714 -13.15228 -12.99852 -12.65490 -12.55154 -12.03932 -11.79022 -11.57378 -11.01048 -10.83640 -10.63395 -9.69935 -9.57598 -9.00732 -8.17829 -6.59117 0.00911 0.14852 0.64584 0.75551 1.24573 1.37627 1.45972 1.60356 2.06824 2.27437 2.47060 2.70647 2.73167 3.27256 3.28974 3.74099 3.81605 3.86862 3.93101 3.94455 4.05322 4.15629 4.47245 4.54269 4.65125 4.70208 4.84673 4.99036 5.09423 5.15258 5.28552 5.51642 5.59426 5.71067 5.82259 5.98076 6.12300 6.40533 6.57816 6.65995 6.74020 6.76446 8.07624 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.003149 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.532732 B = 8890.698332 C = 9619.515215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.057 3.943 3 Si 0.963 3.037 4 H -0.244 1.244 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.484 4.484 8 H 0.054 0.946 9 C 0.076 3.924 10 C -0.262 4.262 11 C 0.211 3.789 12 N -0.674 5.674 13 C 0.121 3.879 14 C -0.096 4.096 15 C -0.131 4.131 16 C 0.245 3.755 17 O -0.321 6.321 18 C 0.415 3.585 19 F -0.211 7.211 20 F -0.212 7.212 21 N -0.511 5.511 22 C 0.086 3.914 23 C -0.236 4.236 24 C -0.077 4.077 25 C -0.064 4.064 26 F -0.170 7.170 27 H 0.298 0.702 28 H 0.114 0.886 29 H 0.418 0.582 30 H 0.148 0.852 31 H 0.169 0.831 32 H 0.233 0.767 33 H 0.179 0.821 34 H 0.132 0.868 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.211 7.956 -8.345 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.160 4.160 3 Si 0.784 3.216 4 H -0.169 1.169 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.512 4.512 8 H 0.072 0.928 9 C 0.072 3.928 10 C -0.285 4.285 11 C 0.114 3.886 12 N -0.299 5.299 13 C 0.019 3.981 14 C -0.125 4.125 15 C -0.151 4.151 16 C 0.066 3.934 17 O -0.234 6.234 18 C 0.326 3.674 19 F -0.193 7.193 20 F -0.193 7.193 21 N -0.232 5.232 22 C -0.074 4.074 23 C -0.258 4.258 24 C -0.096 4.096 25 C -0.084 4.084 26 F -0.149 7.149 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.256 0.744 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.249 0.751 33 H 0.196 0.804 34 H 0.150 0.850 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 20.475 8.205 -8.893 23.783 hybrid contribution -1.428 -0.061 0.654 1.572 sum 19.047 8.144 -8.238 22.293 Atomic orbital electron populations 1.69766 1.09428 1.32012 1.34429 1.26817 0.95152 1.04103 0.89923 0.85564 0.79240 0.76154 0.80648 1.16868 1.19903 1.18231 1.19285 0.96920 0.96819 1.38182 0.92820 1.17574 0.92013 0.91710 0.91511 1.20628 0.97078 1.08244 1.02569 1.17435 0.92678 0.89666 0.88847 1.41940 1.07175 1.50441 1.30352 1.18775 0.86037 0.98538 0.94719 1.21495 0.93570 0.98662 0.98799 1.21109 0.95724 1.01916 0.96381 1.19693 0.84739 0.98061 0.90951 1.86765 1.24560 1.81167 1.30914 1.24088 0.96087 0.73453 0.73755 1.93064 1.97272 1.53373 1.75613 1.93063 1.79551 1.60346 1.86385 1.67233 1.07138 1.17043 1.31775 1.22277 0.89565 0.99215 0.96300 1.20298 1.00410 1.01141 1.03941 1.20721 0.93256 0.99128 0.96533 1.18133 0.94908 1.00528 0.94868 1.91265 1.92600 1.70772 1.60278 0.89129 0.86819 0.74431 0.83413 0.81368 0.75148 0.80373 0.84988 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.04 13.93 21.82 0.30 -43.73 16 2 C 0.06 2.96 5.30 85.24 0.45 3.41 16 3 Si 0.96 40.26 25.14 68.60 1.72 41.98 16 4 H -0.24 -9.32 6.40 99.48 0.64 -8.68 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.48 -26.85 9.19 23.43 0.22 -26.63 16 8 H 0.05 3.31 7.99 -2.91 -0.02 3.29 16 9 C 0.08 3.75 5.02 -21.26 -0.11 3.65 16 10 C -0.26 -11.22 7.33 22.84 0.17 -11.06 16 11 C 0.21 7.53 5.95 38.15 0.23 7.76 16 12 N -0.67 -19.13 5.47 -180.22 -0.99 -20.12 16 13 C 0.12 3.13 5.97 38.23 0.23 3.35 16 14 C -0.10 -2.42 7.99 22.57 0.18 -2.24 16 15 C -0.13 -2.89 10.03 22.45 0.23 -2.66 16 16 C 0.24 5.98 7.19 84.80 0.61 6.59 16 17 O -0.32 -6.48 10.41 -91.07 -0.95 -7.43 16 18 C 0.42 6.57 6.05 113.37 0.69 7.25 16 19 F -0.21 -4.50 16.57 44.97 0.75 -3.76 16 20 F -0.21 -4.48 16.57 44.97 0.75 -3.73 16 21 N -0.51 -13.49 8.06 -308.38 -2.49 -15.97 16 22 C 0.09 2.09 11.10 84.78 0.94 3.04 16 23 C -0.24 -8.09 7.89 22.59 0.18 -7.91 16 24 C -0.08 -2.90 10.00 22.24 0.22 -2.68 16 25 C -0.06 -2.98 7.31 22.90 0.17 -2.81 16 26 F -0.17 -8.36 16.78 44.97 0.75 -7.60 16 27 H 0.30 14.00 8.30 -92.71 -0.77 13.23 16 28 H 0.11 4.82 5.17 -2.91 -0.02 4.80 16 29 H 0.42 10.22 8.90 -92.71 -0.83 9.39 16 30 H 0.15 3.88 6.64 -2.91 -0.02 3.86 16 31 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.23 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.13 3.92 6.57 -2.91 -0.02 3.90 16 35 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -65.18 315.74 4.54 -60.65 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.29 Total: 20.66 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 4.39 Total: -20.94 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -3.17 Total: -79.83 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.95 Total: -7.43 kcal Atomic # 9 Polarization: -17.34 SS G_CDS: 2.24 Total: -15.10 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.72 Total: 41.98 kcal Total: -65.18 4.54 -60.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210303935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.289 kcal (2) G-P(sol) polarization free energy of solvation -65.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds