Wall clock time and date at job start Tue Mar 31 2020 14:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47126 * 240.00035 * 3 2 1 5 5 H 1.48494 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46808 * 120.00267 * 3 2 1 7 7 C 1.39841 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00046 * 195.54008 * 7 2 1 9 9 C 1.41101 * 119.99894 * 15.54583 * 7 2 1 10 10 C 1.40910 * 120.14833 * 207.19489 * 9 7 2 11 11 C 1.36292 * 119.84158 * 179.97438 * 10 9 7 12 12 C 1.39631 * 120.15813 * 0.02562 * 11 10 9 13 13 N 1.38750 * 119.84688 * 179.97438 * 12 11 10 14 14 C 1.39815 * 120.00551 * 327.02416 * 13 12 11 15 15 C 1.39463 * 120.43828 * 149.18165 * 14 13 12 16 16 C 1.38298 * 118.42189 * 179.71496 * 15 14 13 17 17 C 1.38928 * 119.18933 * 0.57699 * 16 15 14 18 18 O 1.35762 * 119.59399 * 179.70093 * 17 16 15 19 19 C 1.42896 * 116.99480 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.47690 * 60.00328 * 19 18 17 21 21 F 1.39903 * 109.46714 * 180.02562 * 19 18 17 22 22 F 1.39898 * 109.47447 * 299.99990 * 19 18 17 23 23 N 1.32217 * 120.80795 * 359.68344 * 17 16 15 24 24 C 1.31934 * 121.72519 * 0.02562 * 23 17 16 25 25 C 1.39627 * 120.30314 * 359.97438 * 12 11 10 26 26 C 1.36297 * 120.15895 * 359.97438 * 25 12 11 27 27 H 0.97001 * 119.99984 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.07843 * 0.04527 * 10 9 7 29 29 H 1.07997 * 119.92672 * 180.30409 * 11 10 9 30 30 H 0.97010 * 119.99731 * 147.01975 * 13 12 11 31 31 H 1.08002 * 120.79154 * 359.97438 * 15 14 13 32 32 H 1.07992 * 120.40579 * 180.30362 * 16 15 14 33 33 H 1.08000 * 119.63797 * 180.02562 * 24 23 17 34 34 H 1.08001 * 119.91577 * 180.02562 * 25 12 11 35 35 H 1.08002 * 120.07994 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2783 2.7464 0.0006 6 1 3.0970 1.6963 1.2125 7 6 2.0084 -1.2111 -0.0005 8 1 3.0588 -1.2283 0.2500 9 6 1.3415 -2.4105 -0.3286 10 6 1.7992 -3.6389 0.1883 11 6 1.1500 -4.7936 -0.1322 12 6 0.0343 -4.7615 -0.9710 13 7 -0.6214 -5.9410 -1.2936 14 6 0.1006 -7.1323 -1.4124 15 6 -0.4954 -8.3539 -1.1002 16 6 0.2554 -9.5071 -1.2385 17 6 1.5727 -9.4104 -1.6690 18 8 2.3191 -10.5366 -1.8017 19 6 3.6664 -10.3729 -2.2488 20 9 4.3631 -9.5648 -1.3440 21 9 4.2861 -11.6246 -2.3297 22 9 3.6690 -9.7693 -3.5108 23 7 2.1083 -8.2350 -1.9513 24 6 1.4216 -7.1142 -1.8370 25 6 -0.4247 -3.5478 -1.4868 26 6 0.2143 -2.3853 -1.1737 27 1 -0.4850 0.8401 0.0004 28 1 2.6616 -3.6651 0.8379 29 1 1.4967 -5.7353 0.2672 30 1 -1.5809 -5.9391 -1.4365 31 1 -1.5203 -8.3987 -0.7625 32 1 -0.1757 -10.4706 -1.0103 33 1 1.8926 -6.1724 -2.0770 34 1 -1.2886 -3.5302 -2.1347 35 1 -0.1420 -1.4472 -1.5730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210821518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:44 Heat of formation + Delta-G solvation = -133.617854 kcal Electronic energy + Delta-G solvation = -26103.945395 eV Core-core repulsion = 21651.824120 eV Total energy + Delta-G solvation = -4452.121276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.16616 -47.98055 -47.75223 -40.70522 -38.78545 -37.61038 -35.31746 -33.36170 -32.25307 -30.21383 -29.38457 -28.31703 -25.95053 -25.02340 -23.43791 -22.79271 -21.11311 -20.60343 -19.86414 -19.00396 -18.96126 -17.50189 -17.16239 -16.77526 -16.52533 -15.52228 -15.30339 -15.26232 -14.73686 -14.49244 -14.38598 -14.23349 -14.09454 -13.95615 -13.93981 -13.61399 -13.36357 -13.26521 -12.92031 -12.79273 -12.55121 -12.22839 -11.97803 -11.62594 -11.20446 -11.07450 -10.69309 -10.50723 -9.93425 -9.81935 -9.65689 -9.52149 -9.19105 -8.06693 -7.75624 -6.88870 -6.71967 -4.37370 1.15008 1.25216 1.56553 2.65454 2.88917 3.01374 3.01625 3.04108 3.11156 3.74129 3.78344 3.86339 3.95497 4.21043 4.34621 4.51053 4.92198 4.93531 5.01189 5.52567 5.55272 5.75359 6.03039 6.06804 6.07518 6.20587 6.61077 6.79356 6.86285 6.93158 7.07673 7.28676 7.41683 7.52605 7.79730 7.88831 8.04517 8.12620 8.23269 8.49115 8.76544 8.83541 10.08978 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002723 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.235252 B =10278.450525 C =11213.866044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.102 3.898 10 C -0.202 4.202 11 C -0.111 4.111 12 C 0.012 3.988 13 N -0.661 5.661 14 C 0.152 3.848 15 C -0.122 4.122 16 C -0.120 4.120 17 C 0.231 3.769 18 O -0.312 6.312 19 C 0.613 3.387 20 F -0.160 7.160 21 F -0.144 7.144 22 F -0.162 7.162 23 N -0.490 5.490 24 C 0.095 3.905 25 C -0.119 4.119 26 C -0.142 4.142 27 H 0.282 0.718 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.400 0.600 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.170 0.830 34 H 0.092 0.908 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -14.621 -3.444 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.099 3.901 10 C -0.222 4.222 11 C -0.131 4.131 12 C -0.082 4.082 13 N -0.282 5.282 14 C 0.046 3.954 15 C -0.152 4.152 16 C -0.141 4.141 17 C 0.054 3.946 18 O -0.228 6.228 19 C 0.522 3.478 20 F -0.142 7.142 21 F -0.126 7.126 22 F -0.143 7.143 23 N -0.210 5.210 24 C -0.067 4.067 25 C -0.139 4.139 26 C -0.162 4.162 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.235 0.765 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.110 0.890 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.173 -14.554 -3.637 15.003 hybrid contribution -0.570 0.758 0.236 0.977 sum -0.396 -13.796 -3.401 14.214 Atomic orbital electron populations 1.69825 1.07516 1.29452 1.35302 1.25908 0.94800 1.01375 0.92240 0.86330 0.80103 0.80056 0.80069 1.18751 1.20323 1.18964 1.19517 0.97427 0.91031 1.40732 0.90316 1.17639 0.91355 0.92096 0.88963 1.20637 1.03431 0.92631 1.05537 1.20153 0.97192 0.97305 0.98480 1.17131 1.00496 0.84284 1.06276 1.41512 1.08581 1.03840 1.74295 1.18780 0.93634 0.87387 0.95631 1.21058 1.01358 0.90352 1.02468 1.20668 0.90594 1.00102 1.02726 1.19054 0.89015 0.83741 1.02831 1.86503 1.21600 1.32022 1.82656 1.19157 0.79301 0.73754 0.75579 1.93305 1.79669 1.73605 1.67620 1.93263 1.81312 1.41909 1.96121 1.93293 1.96012 1.83601 1.41442 1.67140 1.38288 0.97917 1.17633 1.22337 0.91472 0.95105 0.97820 1.20244 1.00579 0.92155 1.00958 1.20923 0.98689 0.96432 1.00166 0.90725 0.88517 0.89191 0.76499 0.83820 0.83950 0.81277 0.89021 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.53 10.99 55.54 0.61 -18.92 16 2 C 0.07 1.78 5.16 -17.34 -0.09 1.69 16 3 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.51 9.03 -37.90 -0.34 -11.86 16 8 H 0.08 1.91 7.89 -52.49 -0.41 1.49 16 9 C 0.10 2.55 5.55 -106.79 -0.59 1.95 16 10 C -0.20 -4.65 9.74 -39.27 -0.38 -5.03 16 11 C -0.11 -2.30 7.95 -39.76 -0.32 -2.62 16 12 C 0.01 0.23 5.85 -83.69 -0.49 -0.26 16 13 N -0.66 -10.22 5.41 -8.19 -0.04 -10.27 16 14 C 0.15 2.23 5.89 -83.57 -0.49 1.74 16 15 C -0.12 -1.46 10.10 -39.10 -0.39 -1.85 16 16 C -0.12 -1.43 10.03 -39.30 -0.39 -1.82 16 17 C 0.23 3.36 7.19 -17.13 -0.12 3.23 16 18 O -0.31 -4.30 10.36 -19.00 -0.20 -4.49 16 19 C 0.61 8.26 3.50 101.05 0.35 8.61 16 20 F -0.16 -2.34 16.55 2.25 0.04 -2.30 16 21 F -0.14 -1.71 17.53 2.25 0.04 -1.67 16 22 F -0.16 -2.30 16.55 2.25 0.04 -2.26 16 23 N -0.49 -7.96 8.06 -13.14 -0.11 -8.06 16 24 C 0.10 1.54 9.23 -17.31 -0.16 1.38 16 25 C -0.12 -2.48 9.89 -39.76 -0.39 -2.87 16 26 C -0.14 -3.39 8.61 -39.27 -0.34 -3.73 16 27 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.09 1.77 6.86 -52.49 -0.36 1.41 16 30 H 0.40 5.19 8.92 -40.82 -0.36 4.83 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.17 2.95 6.77 -52.49 -0.36 2.60 16 34 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.12 2.99 6.26 -52.49 -0.33 2.66 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -25.87 321.31 -6.61 -32.48 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.65 Total: 9.20 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -4.15 Total: -11.43 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.46 Total: -37.25 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.20 Total: -4.49 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.87 -6.61 -32.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210821518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.134 kcal (2) G-P(sol) polarization free energy of solvation -25.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds