Wall clock time and date at job start Tue Mar 31 2020 14:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47126 * 240.00035 * 3 2 1 5 5 H 1.48494 * 109.47208 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46808 * 120.00267 * 3 2 1 7 7 C 1.39841 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00046 * 195.54008 * 7 2 1 9 9 C 1.41101 * 119.99894 * 15.54583 * 7 2 1 10 10 C 1.40910 * 120.14833 * 207.19489 * 9 7 2 11 11 C 1.36292 * 119.84158 * 179.97438 * 10 9 7 12 12 C 1.39631 * 120.15813 * 0.02562 * 11 10 9 13 13 N 1.38750 * 119.84688 * 179.97438 * 12 11 10 14 14 C 1.39815 * 120.00551 * 327.02416 * 13 12 11 15 15 C 1.39463 * 120.43828 * 149.18165 * 14 13 12 16 16 C 1.38298 * 118.42189 * 179.71496 * 15 14 13 17 17 C 1.38928 * 119.18933 * 0.57699 * 16 15 14 18 18 O 1.35762 * 119.59399 * 179.70093 * 17 16 15 19 19 C 1.42896 * 116.99480 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.47690 * 60.00328 * 19 18 17 21 21 F 1.39903 * 109.46714 * 180.02562 * 19 18 17 22 22 F 1.39898 * 109.47447 * 299.99990 * 19 18 17 23 23 N 1.32217 * 120.80795 * 359.68344 * 17 16 15 24 24 C 1.31934 * 121.72519 * 0.02562 * 23 17 16 25 25 C 1.39627 * 120.30314 * 359.97438 * 12 11 10 26 26 C 1.36297 * 120.15895 * 359.97438 * 25 12 11 27 27 H 0.97001 * 119.99984 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.07843 * 0.04527 * 10 9 7 29 29 H 1.07997 * 119.92672 * 180.30409 * 11 10 9 30 30 H 0.97010 * 119.99731 * 147.01975 * 13 12 11 31 31 H 1.08002 * 120.79154 * 359.97438 * 15 14 13 32 32 H 1.07992 * 120.40579 * 180.30362 * 16 15 14 33 33 H 1.08000 * 119.63797 * 180.02562 * 24 23 17 34 34 H 1.08001 * 119.91577 * 180.02562 * 25 12 11 35 35 H 1.08002 * 120.07994 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2783 2.7464 0.0006 6 1 3.0970 1.6963 1.2125 7 6 2.0084 -1.2111 -0.0005 8 1 3.0588 -1.2283 0.2500 9 6 1.3415 -2.4105 -0.3286 10 6 1.7992 -3.6389 0.1883 11 6 1.1500 -4.7936 -0.1322 12 6 0.0343 -4.7615 -0.9710 13 7 -0.6214 -5.9410 -1.2936 14 6 0.1006 -7.1323 -1.4124 15 6 -0.4954 -8.3539 -1.1002 16 6 0.2554 -9.5071 -1.2385 17 6 1.5727 -9.4104 -1.6690 18 8 2.3191 -10.5366 -1.8017 19 6 3.6664 -10.3729 -2.2488 20 9 4.3631 -9.5648 -1.3440 21 9 4.2861 -11.6246 -2.3297 22 9 3.6690 -9.7693 -3.5108 23 7 2.1083 -8.2350 -1.9513 24 6 1.4216 -7.1142 -1.8370 25 6 -0.4247 -3.5478 -1.4868 26 6 0.2143 -2.3853 -1.1737 27 1 -0.4850 0.8401 0.0004 28 1 2.6616 -3.6651 0.8379 29 1 1.4967 -5.7353 0.2672 30 1 -1.5809 -5.9391 -1.4365 31 1 -1.5203 -8.3987 -0.7625 32 1 -0.1757 -10.4706 -1.0103 33 1 1.8926 -6.1724 -2.0770 34 1 -1.2886 -3.5302 -2.1347 35 1 -0.1420 -1.4472 -1.5730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210821518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:44 Heat of formation + Delta-G solvation = -148.133352 kcal Electronic energy + Delta-G solvation = -26104.574835 eV Core-core repulsion = 21651.824120 eV Total energy + Delta-G solvation = -4452.750715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.24762 -49.03271 -48.88173 -41.85335 -40.15827 -39.00146 -36.77964 -34.98457 -33.39836 -31.79408 -30.99947 -29.75227 -27.09259 -26.63003 -24.60041 -24.06767 -22.76807 -22.20396 -20.96174 -20.09351 -20.06017 -19.24502 -18.36757 -18.17331 -17.72087 -16.98000 -16.72494 -16.44392 -15.82076 -15.76413 -15.57403 -15.45567 -15.32810 -15.16747 -15.06060 -15.03850 -14.57974 -14.39427 -14.38099 -14.05912 -13.95698 -13.81801 -13.54834 -13.24138 -12.79069 -12.70347 -12.29612 -12.01824 -11.62161 -11.27339 -11.02774 -10.87884 -10.61718 -9.54923 -9.49334 -8.62543 -8.22977 -6.19297 0.02189 0.17022 0.48685 1.00551 1.11592 1.40355 1.50158 1.54263 1.92611 2.23044 2.50243 2.61035 2.78268 2.87221 3.10941 3.21732 3.73027 3.82976 3.95606 4.00280 4.36660 4.39111 4.55252 4.66172 4.95889 5.01942 5.09974 5.13063 5.21735 5.32097 5.57301 5.66440 5.72116 5.88880 6.08835 6.30205 6.51007 6.62066 6.72839 6.93115 6.96474 7.09483 8.36745 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002723 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.235252 B =10278.450525 C =11213.866044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.068 3.932 10 C -0.215 4.215 11 C -0.115 4.115 12 C 0.047 3.953 13 N -0.658 5.658 14 C 0.140 3.860 15 C -0.095 4.095 16 C -0.107 4.107 17 C 0.222 3.778 18 O -0.308 6.308 19 C 0.615 3.385 20 F -0.169 7.169 21 F -0.133 7.133 22 F -0.168 7.168 23 N -0.515 5.515 24 C 0.074 3.926 25 C -0.125 4.125 26 C -0.159 4.159 27 H 0.287 0.713 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.416 0.584 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -17.003 -3.479 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.066 3.934 10 C -0.235 4.235 11 C -0.136 4.136 12 C -0.048 4.048 13 N -0.282 5.282 14 C 0.036 3.964 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.044 3.956 18 O -0.223 6.223 19 C 0.524 3.476 20 F -0.151 7.151 21 F -0.115 7.115 22 F -0.150 7.150 23 N -0.235 5.235 24 C -0.086 4.086 25 C -0.145 4.145 26 C -0.179 4.179 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.255 0.745 31 H 0.202 0.798 32 H 0.200 0.800 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.398 -16.982 -3.685 17.433 hybrid contribution -0.116 1.082 0.191 1.104 sum -1.513 -15.900 -3.494 16.350 Atomic orbital electron populations 1.69872 1.08652 1.30426 1.36580 1.26631 0.95541 1.04137 0.91456 0.85314 0.78811 0.76092 0.79882 1.18670 1.19208 1.18707 1.19705 0.97469 0.92438 1.43426 0.91019 1.17912 0.92499 0.92800 0.90230 1.20765 1.03790 0.93103 1.05840 1.20248 0.97643 0.96950 0.98764 1.17108 0.98879 0.85475 1.03356 1.41288 1.09242 1.02761 1.74952 1.18850 0.93101 0.88065 0.96396 1.21503 1.02754 0.88641 0.99514 1.21151 0.89143 1.01878 1.00582 1.19547 0.90126 0.83377 1.02569 1.86517 1.21496 1.31715 1.82585 1.19143 0.79338 0.73963 0.75196 1.93289 1.79879 1.74012 1.67914 1.93288 1.81101 1.41031 1.96039 1.93282 1.96044 1.83827 1.41807 1.67028 1.39261 0.98561 1.18665 1.22068 0.92461 0.94527 0.99593 1.20468 1.01219 0.91722 1.01122 1.20880 0.99221 0.96978 1.00846 0.90229 0.88726 0.87975 0.74543 0.79757 0.79997 0.83649 0.86383 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.18 10.99 21.81 0.24 -41.94 16 2 C 0.04 1.81 5.16 85.22 0.44 2.25 16 3 Si 0.98 37.82 29.59 68.60 2.03 39.85 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.50 -26.58 9.03 23.36 0.21 -26.37 16 8 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 9 C 0.07 3.56 5.55 -21.27 -0.12 3.44 16 10 C -0.21 -10.25 9.74 22.47 0.22 -10.03 16 11 C -0.12 -4.79 7.95 22.15 0.18 -4.61 16 12 C 0.05 1.78 5.85 38.72 0.23 2.00 16 13 N -0.66 -18.47 5.41 -179.81 -0.97 -19.45 16 14 C 0.14 3.70 5.89 38.29 0.23 3.92 16 15 C -0.10 -1.77 10.10 22.58 0.23 -1.55 16 16 C -0.11 -2.02 10.03 22.45 0.23 -1.80 16 17 C 0.22 5.82 7.19 84.80 0.61 6.43 16 18 O -0.31 -7.68 10.36 -90.88 -0.94 -8.62 16 19 C 0.61 15.69 3.50 113.37 0.40 16.09 16 20 F -0.17 -4.82 16.55 44.97 0.74 -4.08 16 21 F -0.13 -2.93 17.53 44.97 0.79 -2.14 16 22 F -0.17 -4.63 16.55 44.97 0.74 -3.88 16 23 N -0.52 -16.08 8.06 -308.32 -2.48 -18.56 16 24 C 0.07 2.33 9.23 84.80 0.78 3.12 16 25 C -0.12 -5.16 9.89 22.15 0.22 -4.94 16 26 C -0.16 -7.86 8.61 22.47 0.19 -7.66 16 27 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 28 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.10 3.95 6.86 -2.91 -0.02 3.93 16 30 H 0.42 9.19 8.92 -92.70 -0.83 8.37 16 31 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.15 5.19 6.77 -2.91 -0.02 5.17 16 34 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.10 5.40 6.26 -2.91 -0.02 5.38 16 Total: -1.00 -59.02 321.31 4.53 -54.48 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.35 Total: 24.04 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.04 Total: -19.70 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.22 Total: -79.96 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.94 Total: -8.62 kcal Atomic # 9 Polarization: -12.38 SS G_CDS: 2.28 Total: -10.10 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -59.02 4.53 -54.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210821518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.650 kcal (2) G-P(sol) polarization free energy of solvation -59.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds