Wall clock time and date at job start Tue Mar 31 2020 14:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86801 * 119.99797 * 2 1 4 4 H 1.48502 * 109.46776 * 268.42912 * 3 2 1 5 5 H 1.48502 * 109.47297 * 28.42466 * 3 2 1 6 6 H 1.48498 * 109.47137 * 148.42851 * 3 2 1 7 7 C 1.39923 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00262 * 335.79642 * 7 2 1 9 9 C 1.41407 * 119.99510 * 155.79687 * 7 2 1 10 10 C 1.40793 * 120.21240 * 328.94302 * 9 7 2 11 11 C 1.37647 * 119.89828 * 180.02562 * 10 9 7 12 12 C 1.38507 * 120.33214 * 359.75220 * 11 10 9 13 13 C 1.39324 * 120.41931 * 0.50772 * 12 11 10 14 14 N 1.39691 * 119.95196 * 179.76746 * 13 12 11 15 15 C 1.39996 * 120.00397 * 329.67982 * 14 13 12 16 16 C 1.39403 * 120.42798 * 331.26886 * 15 14 13 17 17 C 1.38323 * 118.42554 * 179.97438 * 16 15 14 18 18 C 1.38909 * 119.18553 * 359.97438 * 17 16 15 19 19 O 1.35773 * 119.60116 * 180.02562 * 18 17 16 20 20 C 1.42901 * 117.00167 * 180.02562 * 19 18 17 21 21 F 1.39896 * 109.46999 * 59.99277 * 20 19 18 22 22 F 1.39890 * 109.47220 * 179.97438 * 20 19 18 23 23 F 1.39902 * 109.46462 * 300.00043 * 20 19 18 24 24 N 1.32196 * 120.79451 * 0.02562 * 18 17 16 25 25 C 1.31955 * 121.72400 * 0.02562 * 24 18 17 26 26 C 1.38341 * 120.08803 * 359.49087 * 13 12 11 27 27 H 0.97000 * 120.00523 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.04774 * 0.05093 * 10 9 7 29 29 H 1.08008 * 119.83143 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.79363 * 180.27666 * 12 11 10 31 31 H 0.97006 * 119.99950 * 149.68472 * 14 13 12 32 32 H 1.07998 * 120.78804 * 359.95482 * 16 15 14 33 33 H 1.07999 * 120.40768 * 179.72479 * 17 16 15 34 34 H 1.08004 * 119.63342 * 180.02562 * 25 24 18 35 35 H 1.08005 * 120.15946 * 180.23552 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.5230 2.0272 -1.3996 5 1 1.4235 2.6621 0.6664 6 1 3.5228 1.4501 0.7330 7 6 2.0080 -1.2118 0.0005 8 1 1.5393 -2.1057 0.3844 9 6 3.3288 -1.2657 -0.5015 10 6 3.7280 -0.4023 -1.5396 11 6 5.0151 -0.4607 -2.0238 12 6 5.9226 -1.3616 -1.4914 13 6 5.5406 -2.2259 -0.4676 14 7 6.4623 -3.1339 0.0589 15 6 7.4811 -3.6472 -0.7527 16 6 7.2910 -3.7763 -2.1276 17 6 8.3254 -4.2878 -2.8902 18 6 9.5112 -4.6530 -2.2655 19 8 10.5322 -5.1555 -3.0059 20 6 11.7259 -5.5134 -2.3066 21 9 11.4322 -6.4961 -1.3553 22 9 12.6671 -6.0104 -3.2145 23 9 12.2468 -4.3844 -1.6653 24 7 9.6574 -4.5170 -0.9587 25 6 8.6926 -4.0339 -0.1991 26 6 4.2513 -2.1821 0.0322 27 1 -0.4851 0.8400 -0.0004 28 1 3.0254 0.3049 -1.9550 29 1 5.3203 0.2024 -2.8199 30 1 6.9316 -1.3969 -1.8748 31 1 6.3965 -3.4089 0.9868 32 1 6.3581 -3.4840 -2.5865 33 1 8.2112 -4.4057 -3.9577 34 1 8.8486 -3.9370 0.8652 35 1 3.9551 -2.8489 0.8284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210821582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:21 Heat of formation + Delta-G solvation = -134.365898 kcal Electronic energy + Delta-G solvation = -25971.104459 eV Core-core repulsion = 21518.950746 eV Total energy + Delta-G solvation = -4452.153713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.30769 -48.11513 -47.90530 -40.87487 -38.94815 -37.78166 -35.39961 -33.45947 -32.38399 -30.43501 -30.27574 -27.81165 -25.97945 -25.37302 -23.74441 -23.04050 -21.25721 -20.66540 -19.91680 -19.17564 -19.11062 -17.85893 -17.25341 -17.03273 -16.19700 -15.79095 -15.52585 -14.98212 -14.86220 -14.81098 -14.62001 -14.49189 -14.37906 -14.11168 -14.09379 -13.93284 -13.44828 -13.30912 -13.09996 -12.86653 -12.73482 -12.69393 -12.15266 -11.78508 -11.16494 -11.03369 -10.79523 -10.41273 -10.14375 -9.94278 -9.77469 -9.64177 -9.18695 -8.38019 -7.82057 -7.09031 -6.84458 -4.61667 0.98242 1.12936 1.42732 2.47258 2.56186 2.85586 3.05542 3.13355 3.23018 3.51092 3.60204 3.79191 3.89458 4.06578 4.13669 4.36372 4.74855 4.85958 4.96306 5.26229 5.41581 5.53741 5.84965 5.98752 6.06446 6.14708 6.39375 6.51583 6.58414 6.66118 6.78932 7.08025 7.28982 7.40371 7.53738 7.60600 7.77599 7.94781 8.08633 8.26061 8.53363 8.69314 9.93254 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.039007 B = 0.002430 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.653391 B =11519.052642 C =11663.347767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.089 3.911 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.452 4.452 8 H 0.091 0.909 9 C 0.114 3.886 10 C -0.252 4.252 11 C -0.056 4.056 12 C -0.278 4.278 13 C 0.190 3.810 14 N -0.677 5.677 15 C 0.148 3.852 16 C -0.089 4.089 17 C -0.123 4.123 18 C 0.246 3.754 19 O -0.310 6.310 20 C 0.613 3.387 21 F -0.162 7.162 22 F -0.143 7.143 23 F -0.161 7.161 24 N -0.495 5.495 25 C 0.078 3.922 26 C -0.244 4.244 27 H 0.287 0.713 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.407 0.593 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.434 -6.998 -3.218 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.480 4.480 8 H 0.109 0.891 9 C 0.110 3.890 10 C -0.271 4.271 11 C -0.075 4.075 12 C -0.299 4.299 13 C 0.096 3.904 14 N -0.299 5.299 15 C 0.044 3.956 16 C -0.118 4.118 17 C -0.144 4.144 18 C 0.067 3.933 19 O -0.225 6.225 20 C 0.522 3.478 21 F -0.144 7.144 22 F -0.124 7.124 23 F -0.143 7.143 24 N -0.214 5.214 25 C -0.083 4.083 26 C -0.266 4.266 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.243 0.757 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.935 -7.145 -3.134 18.646 hybrid contribution -0.256 0.794 0.185 0.855 sum 16.679 -6.351 -2.949 18.089 Atomic orbital electron populations 1.69750 1.08299 1.30549 1.33526 1.26151 0.94528 1.01860 0.90594 0.86384 0.80747 0.79670 0.79750 1.18905 1.21556 1.17319 1.19427 0.95701 0.96915 1.35974 0.89115 1.17462 0.92171 0.89854 0.89466 1.21189 0.96757 1.06778 1.02405 1.20445 0.93389 0.96194 0.97430 1.20153 0.99183 1.04241 1.06369 1.17492 0.88232 0.89245 0.95441 1.42121 1.28776 1.46489 1.12547 1.18748 0.89495 0.95541 0.91835 1.21469 0.99741 0.98003 0.92574 1.20848 0.90128 1.01593 1.01790 1.19080 0.86665 0.99637 0.87912 1.86545 1.21600 1.78461 1.35901 1.19153 0.78681 0.75441 0.74479 1.93290 1.92972 1.62997 1.65122 1.93271 1.63336 1.87474 1.68322 1.93297 1.87032 1.51980 1.82023 1.67053 1.33422 1.16763 1.04194 1.21975 0.86488 1.00178 0.99632 1.20678 0.90969 1.08395 1.06544 0.90290 0.87820 0.88507 0.88580 0.75672 0.82457 0.83502 0.81967 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.26 13.93 55.55 0.77 -19.49 16 2 C 0.09 2.22 5.29 -17.35 -0.09 2.12 16 3 Si 0.91 19.69 25.13 -169.99 -4.27 15.41 16 4 H -0.26 -5.55 6.40 56.52 0.36 -5.18 16 5 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.25 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.45 -11.52 9.51 -37.75 -0.36 -11.88 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.11 2.69 5.01 -106.85 -0.54 2.15 16 10 C -0.25 -5.64 7.44 -38.83 -0.29 -5.93 16 11 C -0.06 -1.11 10.01 -39.70 -0.40 -1.50 16 12 C -0.28 -5.19 7.89 -39.08 -0.31 -5.50 16 13 C 0.19 3.51 5.95 -83.84 -0.50 3.01 16 14 N -0.68 -9.89 5.47 -8.33 -0.05 -9.93 16 15 C 0.15 2.01 5.98 -83.53 -0.50 1.51 16 16 C -0.09 -1.19 7.98 -39.12 -0.31 -1.50 16 17 C -0.12 -1.49 10.03 -39.30 -0.39 -1.88 16 18 C 0.25 3.29 7.19 -17.15 -0.12 3.17 16 19 O -0.31 -3.94 10.36 -19.03 -0.20 -4.14 16 20 C 0.61 7.35 3.50 101.05 0.35 7.71 16 21 F -0.16 -2.02 16.55 2.25 0.04 -1.98 16 22 F -0.14 -1.53 17.53 2.25 0.04 -1.49 16 23 F -0.16 -2.05 16.55 2.25 0.04 -2.01 16 24 N -0.49 -6.81 8.06 -13.16 -0.11 -6.92 16 25 C 0.08 0.98 11.10 -17.33 -0.19 0.79 16 26 C -0.24 -5.12 9.69 -38.67 -0.37 -5.49 16 27 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.10 2.35 5.15 -52.49 -0.27 2.08 16 29 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.10 1.66 6.57 -52.49 -0.34 1.32 16 31 H 0.41 5.02 8.90 -40.82 -0.36 4.66 16 32 H 0.16 2.20 6.64 -52.49 -0.35 1.85 16 33 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -26.11 316.65 -5.60 -31.71 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.62 Total: 7.29 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -4.02 Total: -13.23 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.62 Total: -36.34 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.20 Total: -4.14 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.11 Total: -5.48 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.27 Total: 15.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.11 -5.60 -31.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210821582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.655 kcal (2) G-P(sol) polarization free energy of solvation -26.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds