Wall clock time and date at job start Tue Mar 31 2020 14:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86792 * 120.00538 * 2 1 4 4 H 1.48500 * 109.46957 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47489 * 119.99850 * 3 2 1 6 6 H 1.48502 * 109.47459 * 240.00463 * 3 2 1 7 7 C 1.39906 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99658 * 149.25628 * 7 2 1 9 9 C 1.41001 * 119.99913 * 329.25972 * 7 2 1 10 10 C 1.40747 * 120.31242 * 334.35177 * 9 7 2 11 11 C 1.36418 * 119.95337 * 179.97438 * 10 9 7 12 12 C 1.38944 * 120.61104 * 0.02867 * 11 10 9 13 13 C 1.38098 * 120.63434 * 359.97438 * 12 11 10 14 14 C 1.38834 * 120.02141 * 359.69868 * 13 12 11 15 15 N 1.38630 * 120.29525 * 180.27816 * 14 13 12 16 16 C 1.39816 * 119.99684 * 256.13678 * 15 14 13 17 17 C 1.39470 * 120.42850 * 184.36720 * 16 15 14 18 18 C 1.38298 * 118.41252 * 180.02562 * 17 16 15 19 19 C 1.38927 * 119.19976 * 0.02562 * 18 17 16 20 20 O 1.35747 * 119.59921 * 179.97438 * 19 18 17 21 21 C 1.42900 * 116.99818 * 179.97438 * 20 19 18 22 22 F 1.39895 * 109.47510 * 60.00523 * 21 20 19 23 23 F 1.39907 * 109.46785 * 180.02562 * 21 20 19 24 24 F 1.39898 * 109.47260 * 299.99812 * 21 20 19 25 25 N 1.32214 * 120.80201 * 0.02562 * 19 18 17 26 26 C 1.31936 * 121.73165 * 359.65587 * 25 19 18 27 27 H 0.97004 * 120.00567 * 172.86659 * 1 2 3 28 28 H 1.07997 * 120.01777 * 359.96368 * 10 9 7 29 29 H 1.07995 * 119.69552 * 180.02562 * 11 10 9 30 30 H 1.07998 * 119.67889 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.98456 * 180.02562 * 13 12 11 32 32 H 0.96999 * 120.00503 * 76.14894 * 15 14 13 33 33 H 1.07993 * 120.79665 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.39745 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.64374 * 180.31169 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 1.2781 2.7464 0.0006 5 1 3.0967 1.6963 1.2125 6 1 3.0967 1.6963 -1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 2.9745 -1.2772 -0.4787 9 6 1.4518 -2.3472 0.6231 10 6 0.5224 -2.1990 1.6696 11 6 -0.0119 -3.3027 2.2675 12 6 0.3530 -4.5780 1.8538 13 6 1.2628 -4.7521 0.8295 14 6 1.8177 -3.6472 0.1981 15 7 2.7271 -3.8154 -0.8346 16 6 4.0911 -3.6114 -0.6050 17 6 5.0038 -3.6891 -1.6568 18 6 6.3432 -3.4806 -1.3825 19 6 6.7327 -3.2033 -0.0781 20 8 8.0454 -2.9978 0.2004 21 6 8.3838 -2.7162 1.5599 22 9 7.9910 -3.7872 2.3697 23 9 9.7665 -2.5321 1.6677 24 9 7.7254 -1.5531 1.9730 25 7 5.8406 -3.1380 0.8955 26 6 4.5540 -3.3249 0.6714 27 1 -0.4851 -0.8335 -0.1043 28 1 0.2325 -1.2122 1.9991 29 1 -0.7250 -3.1842 3.0698 30 1 -0.0790 -5.4413 2.3380 31 1 1.5386 -5.7481 0.5161 32 1 2.4172 -4.0744 -1.7165 33 1 4.6727 -3.9076 -2.6612 34 1 7.0776 -3.5336 -2.1727 35 1 3.8539 -3.2589 1.4911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210822761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:47 Heat of formation + Delta-G solvation = -140.476394 kcal Electronic energy + Delta-G solvation = -27101.170983 eV Core-core repulsion = 22648.752299 eV Total energy + Delta-G solvation = -4452.418684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.99940 -47.81865 -47.57730 -40.42817 -38.68894 -37.54471 -34.84411 -34.04556 -32.09244 -29.71833 -29.57818 -27.68586 -25.73530 -25.10361 -23.42213 -22.55829 -21.21681 -20.52905 -19.67209 -18.82386 -18.78511 -18.07902 -17.14055 -16.49109 -16.30806 -15.19965 -15.14233 -14.70192 -14.58243 -14.56111 -14.28377 -14.11942 -14.06653 -14.01701 -13.78965 -13.76071 -13.27437 -13.13160 -12.84956 -12.61370 -12.52804 -12.27253 -12.14675 -11.43586 -11.07822 -10.87512 -10.57179 -10.45870 -10.02541 -9.71690 -9.46266 -9.31600 -9.02766 -7.87218 -7.83583 -7.39089 -6.90232 -4.62112 1.44930 1.63749 1.77226 2.50538 2.63877 3.08585 3.17925 3.20164 3.29681 3.88538 3.99316 4.07138 4.15657 4.35035 4.40584 4.61417 5.11851 5.18875 5.23955 5.27995 5.81086 5.93726 5.98171 6.08474 6.29074 6.39441 6.46179 6.73125 6.84605 7.02452 7.12117 7.31050 7.54173 7.61029 7.74247 7.88314 7.92430 8.03035 8.19944 8.28291 8.60848 8.73085 9.81063 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.004574 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.797660 B = 6120.423304 C = 7040.625196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.046 3.954 3 Si 1.053 2.947 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.502 4.502 8 H 0.079 0.921 9 C 0.102 3.898 10 C -0.208 4.208 11 C -0.077 4.077 12 C -0.255 4.255 13 C -0.067 4.067 14 C -0.025 4.025 15 N -0.644 5.644 16 C 0.180 3.820 17 C -0.143 4.143 18 C -0.112 4.112 19 C 0.213 3.787 20 O -0.313 6.313 21 C 0.613 3.387 22 F -0.163 7.163 23 F -0.147 7.147 24 F -0.160 7.160 25 N -0.484 5.484 26 C 0.089 3.911 27 H 0.300 0.700 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.395 0.605 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.581 -4.460 -2.155 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.179 4.179 3 Si 0.876 3.124 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.097 3.903 10 C -0.228 4.228 11 C -0.096 4.096 12 C -0.275 4.275 13 C -0.087 4.087 14 C -0.118 4.118 15 N -0.263 5.263 16 C 0.071 3.929 17 C -0.173 4.173 18 C -0.133 4.133 19 C 0.036 3.964 20 O -0.229 6.229 21 C 0.521 3.479 22 F -0.145 7.145 23 F -0.128 7.128 24 F -0.142 7.142 25 N -0.203 5.203 26 C -0.074 4.074 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.692 -2.602 -1.220 10.109 hybrid contribution -0.187 -1.845 -0.847 2.039 sum 9.505 -4.447 -2.067 10.696 Atomic orbital electron populations 1.70491 1.08343 1.34351 1.26601 1.27013 0.95432 1.04417 0.91020 0.83792 0.75984 0.74043 0.78550 1.19687 1.19572 1.19963 1.20427 1.05948 0.94732 1.31745 0.90271 1.17773 0.90276 0.91624 0.90593 1.20827 1.04601 0.97473 0.99881 1.20432 0.97990 0.93124 0.98060 1.20164 1.07098 0.95841 1.04380 1.20782 0.96663 0.96138 0.95084 1.17231 1.03577 0.92453 0.98574 1.41076 1.00794 1.72735 1.11743 1.18969 0.85974 0.93867 0.94101 1.20792 0.91333 1.06402 0.98796 1.20564 0.96239 1.02843 0.93673 1.18944 0.81090 1.05192 0.91217 1.86473 1.25258 1.86497 1.24667 1.19168 0.74511 0.75399 0.78779 1.93282 1.90813 1.56500 1.73910 1.93250 1.29010 1.95200 1.95386 1.93307 1.81091 1.49527 1.90303 1.67066 1.03724 1.15536 1.33967 1.21999 0.89237 1.00353 0.95843 0.88743 0.87714 0.89094 0.89016 0.88994 0.76887 0.84160 0.84274 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.05 12.38 55.55 0.69 -18.36 16 2 C 0.05 1.08 4.78 -17.33 -0.08 1.00 16 3 Si 1.05 20.96 30.03 -169.99 -5.10 15.85 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.50 -12.02 8.32 -37.91 -0.32 -12.33 16 8 H 0.08 1.93 6.60 -52.49 -0.35 1.58 16 9 C 0.10 2.37 4.76 -106.63 -0.51 1.86 16 10 C -0.21 -4.83 8.12 -39.29 -0.32 -5.15 16 11 C -0.08 -1.63 9.96 -39.98 -0.40 -2.03 16 12 C -0.25 -5.12 10.03 -39.37 -0.40 -5.51 16 13 C -0.07 -1.33 9.96 -39.41 -0.39 -1.72 16 14 C -0.03 -0.52 4.60 -83.30 -0.38 -0.90 16 15 N -0.64 -11.54 4.86 -7.92 -0.04 -11.58 16 16 C 0.18 3.15 5.43 -83.56 -0.45 2.70 16 17 C -0.14 -2.08 10.04 -39.10 -0.39 -2.47 16 18 C -0.11 -1.62 10.03 -39.30 -0.39 -2.02 16 19 C 0.21 3.64 7.19 -17.13 -0.12 3.51 16 20 O -0.31 -4.98 10.35 -18.95 -0.20 -5.18 16 21 C 0.61 9.42 3.50 101.05 0.35 9.78 16 22 F -0.16 -2.61 16.55 2.25 0.04 -2.58 16 23 F -0.15 -1.97 17.53 2.25 0.04 -1.93 16 24 F -0.16 -2.69 16.55 2.25 0.04 -2.65 16 25 N -0.48 -9.21 8.06 -13.15 -0.11 -9.31 16 26 C 0.09 1.73 10.08 -17.31 -0.17 1.55 16 27 H 0.30 7.49 7.23 -40.82 -0.30 7.19 16 28 H 0.10 2.54 6.72 -52.49 -0.35 2.19 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.40 6.18 8.85 -40.82 -0.36 5.81 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 35 H 0.17 3.50 6.73 -52.49 -0.35 3.14 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -25.04 320.88 -6.41 -31.45 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -2.62 Total: 11.19 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -3.98 Total: -11.73 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.54 Total: -39.25 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.20 Total: -5.18 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.16 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.10 Total: 15.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.04 -6.41 -31.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210822761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.027 kcal (2) G-P(sol) polarization free energy of solvation -25.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds