Wall clock time and date at job start Tue Mar 31 2020 14:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86792 * 120.00538 * 2 1 4 4 H 1.48500 * 109.46957 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47489 * 119.99850 * 3 2 1 6 6 H 1.48502 * 109.47459 * 240.00463 * 3 2 1 7 7 C 1.39906 * 119.99586 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99658 * 149.25628 * 7 2 1 9 9 C 1.41001 * 119.99913 * 329.25972 * 7 2 1 10 10 C 1.40747 * 120.31242 * 334.35177 * 9 7 2 11 11 C 1.36418 * 119.95337 * 179.97438 * 10 9 7 12 12 C 1.38944 * 120.61104 * 0.02867 * 11 10 9 13 13 C 1.38098 * 120.63434 * 359.97438 * 12 11 10 14 14 C 1.38834 * 120.02141 * 359.69868 * 13 12 11 15 15 N 1.38630 * 120.29525 * 180.27816 * 14 13 12 16 16 C 1.39816 * 119.99684 * 256.13678 * 15 14 13 17 17 C 1.39470 * 120.42850 * 184.36720 * 16 15 14 18 18 C 1.38298 * 118.41252 * 180.02562 * 17 16 15 19 19 C 1.38927 * 119.19976 * 0.02562 * 18 17 16 20 20 O 1.35747 * 119.59921 * 179.97438 * 19 18 17 21 21 C 1.42900 * 116.99818 * 179.97438 * 20 19 18 22 22 F 1.39895 * 109.47510 * 60.00523 * 21 20 19 23 23 F 1.39907 * 109.46785 * 180.02562 * 21 20 19 24 24 F 1.39898 * 109.47260 * 299.99812 * 21 20 19 25 25 N 1.32214 * 120.80201 * 0.02562 * 19 18 17 26 26 C 1.31936 * 121.73165 * 359.65587 * 25 19 18 27 27 H 0.97004 * 120.00567 * 172.86659 * 1 2 3 28 28 H 1.07997 * 120.01777 * 359.96368 * 10 9 7 29 29 H 1.07995 * 119.69552 * 180.02562 * 11 10 9 30 30 H 1.07998 * 119.67889 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.98456 * 180.02562 * 13 12 11 32 32 H 0.96999 * 120.00503 * 76.14894 * 15 14 13 33 33 H 1.07993 * 120.79665 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.39745 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.64374 * 180.31169 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 1.2781 2.7464 0.0006 5 1 3.0967 1.6963 1.2125 6 1 3.0967 1.6963 -1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 2.9745 -1.2772 -0.4787 9 6 1.4518 -2.3472 0.6231 10 6 0.5224 -2.1990 1.6696 11 6 -0.0119 -3.3027 2.2675 12 6 0.3530 -4.5780 1.8538 13 6 1.2628 -4.7521 0.8295 14 6 1.8177 -3.6472 0.1981 15 7 2.7271 -3.8154 -0.8346 16 6 4.0911 -3.6114 -0.6050 17 6 5.0038 -3.6891 -1.6568 18 6 6.3432 -3.4806 -1.3825 19 6 6.7327 -3.2033 -0.0781 20 8 8.0454 -2.9978 0.2004 21 6 8.3838 -2.7162 1.5599 22 9 7.9910 -3.7872 2.3697 23 9 9.7665 -2.5321 1.6677 24 9 7.7254 -1.5531 1.9730 25 7 5.8406 -3.1380 0.8955 26 6 4.5540 -3.3249 0.6714 27 1 -0.4851 -0.8335 -0.1043 28 1 0.2325 -1.2122 1.9991 29 1 -0.7250 -3.1842 3.0698 30 1 -0.0790 -5.4413 2.3380 31 1 1.5386 -5.7481 0.5161 32 1 2.4172 -4.0744 -1.7165 33 1 4.6727 -3.9076 -2.6612 34 1 7.0776 -3.5336 -2.1727 35 1 3.8539 -3.2589 1.4911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210822761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:47 Heat of formation + Delta-G solvation = -153.891796 kcal Electronic energy + Delta-G solvation = -27101.752718 eV Core-core repulsion = 22648.752299 eV Total energy + Delta-G solvation = -4453.000420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.22976 -49.01450 -48.86222 -41.75154 -40.18649 -38.96413 -36.33257 -35.74763 -33.38821 -31.28758 -31.17919 -29.18873 -27.07115 -26.76237 -24.75020 -23.89438 -22.91822 -22.10303 -20.93201 -20.08020 -20.03820 -19.78700 -18.46262 -17.98664 -17.62179 -16.68442 -16.52275 -16.22182 -16.16408 -15.77669 -15.64999 -15.52598 -15.39850 -15.31054 -15.04473 -15.03851 -14.73747 -14.36652 -14.28190 -14.16410 -13.91915 -13.90912 -13.60874 -13.08606 -12.71005 -12.48095 -12.12301 -11.99468 -11.66001 -11.28371 -10.85682 -10.79025 -10.51418 -9.56096 -9.54100 -9.16082 -8.31678 -6.40545 0.18094 0.32375 0.53388 0.83804 0.93894 1.45626 1.58010 1.72802 1.95318 2.24949 2.60103 2.65102 2.74567 2.92438 3.14011 3.29587 3.50141 3.91490 3.98645 4.06621 4.36850 4.43429 4.61234 4.66271 4.81049 4.99252 5.07579 5.13394 5.21546 5.40321 5.56999 5.74700 5.80175 5.88501 6.01787 6.19900 6.29855 6.54670 6.64645 6.80985 6.93584 7.13047 7.99158 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.004574 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.797660 B = 6120.423304 C = 7040.625196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.016 3.984 3 Si 1.093 2.907 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.082 3.918 10 C -0.232 4.232 11 C -0.085 4.085 12 C -0.247 4.247 13 C -0.075 4.075 14 C -0.010 4.010 15 N -0.645 5.645 16 C 0.169 3.831 17 C -0.122 4.122 18 C -0.098 4.098 19 C 0.201 3.799 20 O -0.308 6.308 21 C 0.614 3.386 22 F -0.168 7.168 23 F -0.133 7.133 24 F -0.171 7.171 25 N -0.507 5.507 26 C 0.061 3.939 27 H 0.286 0.714 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.408 0.592 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 -5.840 -3.771 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.204 4.204 3 Si 0.913 3.087 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.554 4.554 8 H 0.088 0.912 9 C 0.077 3.923 10 C -0.252 4.252 11 C -0.103 4.103 12 C -0.266 4.266 13 C -0.094 4.094 14 C -0.104 4.104 15 N -0.267 5.267 16 C 0.062 3.938 17 C -0.152 4.152 18 C -0.119 4.119 19 C 0.022 3.978 20 O -0.224 6.224 21 C 0.523 3.477 22 F -0.150 7.150 23 F -0.114 7.114 24 F -0.153 7.153 25 N -0.227 5.227 26 C -0.101 4.101 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.246 0.754 33 H 0.199 0.801 34 H 0.199 0.801 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.089 -3.998 -2.845 12.126 hybrid contribution -0.513 -1.616 -0.308 1.723 sum 10.576 -5.614 -3.153 12.382 Atomic orbital electron populations 1.70580 1.08880 1.33357 1.29464 1.27969 0.95514 1.06814 0.90065 0.83276 0.75191 0.71430 0.78829 1.19333 1.19969 1.18380 1.20389 1.05874 0.95634 1.33487 0.91161 1.18050 0.90617 0.92824 0.90764 1.20801 1.06083 0.97305 1.01041 1.20695 0.98151 0.93074 0.98381 1.20569 1.06106 0.96227 1.03733 1.21114 0.96371 0.97104 0.94835 1.17364 1.02824 0.91833 0.98428 1.40954 1.00688 1.73409 1.11678 1.19038 0.86081 0.94381 0.94329 1.21263 0.90674 1.03689 0.99579 1.21062 0.96993 1.00367 0.93434 1.19399 0.81091 1.05228 0.92044 1.86480 1.24748 1.86446 1.24696 1.19145 0.74948 0.74939 0.78649 1.93271 1.90975 1.56697 1.74083 1.93280 1.27748 1.95093 1.95302 1.93287 1.81471 1.50106 1.90428 1.66918 1.03890 1.16402 1.35445 1.21591 0.89208 1.03179 0.96093 0.90208 0.89897 0.87136 0.86155 0.86369 0.75380 0.80130 0.80121 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.85 12.38 21.82 0.27 -40.58 16 2 C 0.02 0.77 4.78 85.24 0.41 1.18 16 3 Si 1.09 43.20 30.03 68.60 2.06 45.26 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.53 -25.98 8.32 23.35 0.19 -25.79 16 8 H 0.07 3.50 6.60 -2.91 -0.02 3.48 16 9 C 0.08 3.91 4.76 -21.17 -0.10 3.80 16 10 C -0.23 -11.16 8.12 22.46 0.18 -10.98 16 11 C -0.08 -3.56 9.96 22.01 0.22 -3.34 16 12 C -0.25 -9.49 10.03 22.41 0.22 -9.26 16 13 C -0.07 -2.85 9.96 22.38 0.22 -2.62 16 14 C -0.01 -0.43 4.60 39.03 0.18 -0.25 16 15 N -0.64 -22.29 4.86 -178.98 -0.87 -23.16 16 16 C 0.17 5.70 5.43 38.29 0.21 5.91 16 17 C -0.12 -3.10 10.04 22.58 0.23 -2.88 16 18 C -0.10 -2.45 10.03 22.45 0.23 -2.22 16 19 C 0.20 6.47 7.19 84.80 0.61 7.08 16 20 O -0.31 -9.19 10.35 -90.71 -0.94 -10.13 16 21 C 0.61 18.26 3.50 113.37 0.40 18.66 16 22 F -0.17 -5.30 16.55 44.97 0.74 -4.56 16 23 F -0.13 -3.36 17.53 44.97 0.79 -2.57 16 24 F -0.17 -5.69 16.55 44.97 0.74 -4.94 16 25 N -0.51 -19.17 8.06 -308.35 -2.48 -21.66 16 26 C 0.06 2.39 10.08 84.80 0.85 3.24 16 27 H 0.29 15.02 7.23 -92.71 -0.67 14.35 16 28 H 0.08 4.26 6.72 -2.91 -0.02 4.24 16 29 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 31 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.41 11.87 8.85 -92.71 -0.82 11.05 16 33 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.18 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.13 5.97 6.73 -2.91 -0.02 5.95 16 Total: -1.00 -56.22 320.88 4.82 -51.40 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.45 Total: 28.41 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 4.05 Total: -17.48 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -3.08 Total: -85.40 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.94 Total: -10.13 kcal Atomic # 9 Polarization: -14.34 SS G_CDS: 2.28 Total: -12.07 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.06 Total: 45.26 kcal Total: -56.22 4.82 -51.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210822761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.495 kcal (2) G-P(sol) polarization free energy of solvation -56.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds