Wall clock time and date at job start Tue Mar 31 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35801 * 117.00038 * 2 1 4 4 C 1.39050 * 120.51460 * 0.22474 * 3 2 1 5 5 C 1.38645 * 118.43555 * 180.27111 * 4 3 2 6 6 Cl 1.73601 * 120.30008 * 179.76983 * 5 4 3 7 7 C 1.38570 * 119.39335 * 359.74706 * 5 4 3 8 8 N 1.31620 * 121.00154 * 0.02562 * 7 5 4 9 9 C 1.32656 * 121.70015 * 359.97438 * 8 7 5 10 10 C 1.48329 * 119.74928 * 179.97438 * 9 8 7 11 11 N 1.30790 * 126.41569 * 180.02562 * 10 9 8 12 12 O 1.21292 * 110.09269 * 179.67183 * 11 10 9 13 13 C 1.33675 * 110.02857 * 0.46973 * 12 11 10 14 14 C 1.50703 * 126.43228 * 179.79808 * 13 12 11 15 15 N 1.46906 * 109.47109 * 269.69274 * 14 13 12 16 16 C 1.46895 * 110.99789 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47030 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99961 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00406 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99531 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00291 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47158 * 59.99893 * 21 19 17 23 23 H 1.48501 * 109.46994 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46885 * 299.99904 * 21 19 17 25 25 N 1.30964 * 107.13186 * 359.53971 * 13 12 11 26 26 H 1.08995 * 109.46982 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47440 * 300.00568 * 1 2 3 28 28 H 1.09004 * 109.46757 * 60.00213 * 1 2 3 29 29 H 1.07995 * 120.77900 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.49983 * 179.97438 * 7 5 4 31 31 H 1.08992 * 109.46894 * 149.69009 * 14 13 12 32 32 H 1.09004 * 109.47113 * 29.69160 * 14 13 12 33 33 H 1.00902 * 111.00068 * 56.04268 * 15 14 13 34 34 H 1.08996 * 109.47424 * 299.99656 * 16 15 14 35 35 H 1.09002 * 109.47411 * 60.00282 * 16 15 14 36 36 H 0.96996 * 119.99726 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2988 2.3829 0.0047 5 6 1.9726 3.5946 -0.0013 6 17 1.0883 5.0885 -0.0018 7 6 3.3583 3.6022 -0.0063 8 7 4.0424 2.4778 -0.0060 9 6 3.4405 1.2956 -0.0004 10 6 4.2541 0.0554 -0.0009 11 7 3.8000 -1.1711 0.0036 12 8 4.7235 -1.9574 -0.0048 13 6 5.8863 -1.2979 -0.0057 14 6 7.2629 -1.9111 -0.0107 15 7 7.7165 -2.1076 1.3727 16 6 9.0578 -2.7055 1.4069 17 6 9.4887 -2.8910 2.8391 18 1 8.8316 -2.5947 3.6434 19 6 10.7218 -3.4389 3.1227 20 7 11.5217 -3.8001 2.1432 21 14 11.2555 -3.6694 4.8979 22 1 10.2963 -4.5668 5.5906 23 1 12.6115 -4.2738 4.9325 24 1 11.2828 -2.3515 5.5817 25 7 5.6044 -0.0190 -0.0069 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2193 2.3508 0.0080 30 1 3.8849 4.5451 -0.0114 31 1 7.9545 -1.2470 -0.5290 32 1 7.2304 -2.8730 -0.5225 33 1 7.0579 -2.6675 1.8931 34 1 9.0374 -3.6729 0.9052 35 1 9.7622 -2.0472 0.8984 36 1 12.3890 -4.1859 2.3427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:27 Heat of formation + Delta-G solvation = 49.687255 kcal Electronic energy + Delta-G solvation = -23547.755529 eV Core-core repulsion = 19675.299601 eV Total energy + Delta-G solvation = -3872.455928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.65384 -41.99748 -39.49092 -37.91964 -37.62568 -36.81331 -34.90034 -33.72831 -33.20755 -31.74439 -29.64251 -28.54585 -26.78600 -26.49600 -24.57762 -23.99119 -23.56617 -22.53939 -19.61913 -19.23956 -19.10624 -18.69147 -18.25051 -17.48560 -17.09795 -16.97077 -16.43035 -16.38123 -15.73303 -15.40811 -15.29273 -15.12338 -14.73103 -14.37319 -14.06370 -13.83529 -13.63438 -13.32549 -13.08945 -12.80901 -12.72317 -12.66354 -12.59898 -12.53089 -12.31480 -12.16854 -12.04826 -11.46081 -11.27685 -11.05681 -10.68633 -10.62761 -9.60248 -9.26759 -8.20080 -6.29772 -0.85761 -0.12039 0.10858 0.69364 1.14867 1.44772 1.47392 1.55163 1.64191 1.89888 2.15152 2.38747 2.43150 2.60128 3.14297 3.30897 3.45957 3.55430 3.60392 3.68025 3.91645 4.04752 4.25894 4.30273 4.30995 4.42889 4.57297 4.66142 4.69175 4.84129 4.96005 5.07745 5.27106 5.60280 5.92876 5.99346 6.32496 6.48904 6.56720 6.86311 7.01201 7.39936 8.90882 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019866 B = 0.002269 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.093301 B =12335.785845 C =12978.521101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.305 6.305 3 C 0.130 3.870 4 C -0.147 4.147 5 C -0.027 4.027 6 Cl -0.020 7.020 7 C 0.079 3.921 8 N -0.422 5.422 9 C 0.133 3.867 10 C 0.202 3.798 11 N -0.355 5.355 12 O 0.084 5.916 13 C 0.203 3.797 14 C 0.154 3.846 15 N -0.688 5.688 16 C 0.211 3.789 17 C -0.538 4.538 18 H 0.061 0.939 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.466 5.466 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.193 0.807 30 H 0.199 0.801 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.341 0.659 34 H -0.017 1.017 35 H 0.013 0.987 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.004 13.509 -7.241 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.216 6.216 3 C 0.078 3.922 4 C -0.173 4.173 5 C -0.057 4.057 6 Cl 0.009 6.991 7 C -0.083 4.083 8 N -0.132 5.132 9 C -0.004 4.004 10 C -0.069 4.069 11 N -0.061 5.061 12 O 0.021 5.979 13 C -0.018 4.018 14 C 0.023 3.977 15 N -0.321 5.321 16 C 0.084 3.916 17 C -0.576 4.576 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.198 1.198 25 N -0.200 5.200 26 H 0.138 0.862 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.210 0.790 30 H 0.216 0.784 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.158 0.842 34 H 0.001 0.999 35 H 0.032 0.968 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.467 14.228 -7.230 30.907 hybrid contribution -0.494 -0.997 0.495 1.218 sum -26.961 13.230 -6.735 30.779 Atomic orbital electron populations 1.23624 0.75100 1.06537 1.03330 1.86339 1.24449 1.24171 1.86606 1.19780 0.90866 0.86861 0.94738 1.21856 1.03048 0.88599 1.03841 1.22147 0.93352 0.89285 1.00891 1.98422 1.74644 1.29794 1.96193 1.23180 0.89763 0.96853 0.98490 1.67645 1.39439 0.97065 1.09076 1.17365 0.86765 0.88554 1.07722 1.23506 0.87771 0.92370 1.03207 1.74991 1.10487 1.00725 1.19904 1.85299 1.12453 1.34866 1.65272 1.29013 0.92321 0.86089 0.94382 1.20491 0.83002 1.00818 0.93365 1.60548 1.05532 1.55843 1.10156 1.19268 0.84347 0.91548 0.96417 1.21454 1.02233 1.40831 0.93109 0.92093 1.25832 0.96446 0.94986 1.01970 1.70050 1.10227 1.43033 1.33538 0.85453 0.77358 0.78550 0.79341 1.19206 1.20718 1.19768 1.72139 1.11308 1.17239 1.19271 0.86193 0.90401 0.90204 0.79015 0.78408 0.86561 0.89249 0.84164 0.99899 0.96850 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.83 113.37 1.11 1.19 16 2 O -0.31 -6.49 8.83 -91.32 -0.81 -7.30 16 3 C 0.13 2.88 6.70 22.83 0.15 3.04 16 4 C -0.15 -2.15 8.93 22.56 0.20 -1.95 16 5 C -0.03 -0.40 6.34 22.45 0.14 -0.26 16 6 Cl -0.02 -0.22 28.98 -2.72 -0.08 -0.30 16 7 C 0.08 1.52 10.97 84.80 0.93 2.45 16 8 N -0.42 -11.96 10.28 -184.38 -1.90 -13.85 16 9 C 0.13 3.95 6.77 42.07 0.28 4.23 16 10 C 0.20 7.02 7.88 137.25 1.08 8.10 16 11 N -0.35 -11.93 10.67 -59.11 -0.63 -12.56 16 12 O 0.08 2.73 11.29 74.56 0.84 3.57 16 13 C 0.20 6.92 8.01 88.36 0.71 7.63 16 14 C 0.15 5.14 6.31 85.56 0.54 5.68 16 15 N -0.69 -28.67 6.48 -521.98 -3.38 -32.06 16 16 C 0.21 10.67 5.44 85.56 0.47 11.14 16 17 C -0.54 -29.98 9.32 25.60 0.24 -29.74 16 18 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 19 C 0.01 0.37 5.46 84.65 0.46 0.83 16 20 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 21 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 N -0.47 -17.48 11.56 -302.50 -3.50 -20.98 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.46 7.69 -2.39 -0.02 0.44 16 28 H 0.08 0.43 7.71 -2.38 -0.02 0.41 16 29 H 0.19 1.34 6.45 -2.91 -0.02 1.32 16 30 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.34 13.53 8.71 -89.69 -0.78 12.75 16 34 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -71.15 339.66 -0.45 -71.59 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.37 Total: 7.83 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.32 Total: 12.34 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -9.12 Total: -133.63 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -71.15 -0.45 -71.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.281 kcal (2) G-P(sol) polarization free energy of solvation -71.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds