Wall clock time and date at job start Tue Mar 31 2020 14:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35598 * 116.99902 * 2 1 4 4 N 1.32184 * 119.75416 * 0.02562 * 3 2 1 5 5 C 1.31930 * 121.78503 * 179.72238 * 4 3 2 6 6 C 1.38323 * 121.09146 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 120.30901 * 180.02562 * 6 5 4 8 8 C 1.38609 * 119.38781 * 0.02562 * 6 5 4 9 9 C 1.39599 * 118.36387 * 359.97438 * 8 6 5 10 10 C 1.48293 * 120.55911 * 180.02562 * 9 8 6 11 11 N 1.30818 * 126.42236 * 179.97438 * 10 9 8 12 12 O 1.21286 * 110.08322 * 179.97438 * 11 10 9 13 13 C 1.33662 * 110.04457 * 0.02562 * 12 11 10 14 14 C 1.50701 * 126.43694 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.47187 * 269.98232 * 14 13 12 16 16 C 1.46907 * 110.99850 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.46905 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00113 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00189 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99829 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00477 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47195 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47379 * 119.99434 * 21 19 17 24 24 H 1.48497 * 109.47274 * 240.00198 * 21 19 17 25 25 N 1.30977 * 107.13613 * 359.72781 * 13 12 11 26 26 H 1.08998 * 109.46742 * 299.99584 * 1 2 3 27 27 H 1.09000 * 109.47170 * 59.99382 * 1 2 3 28 28 H 1.09003 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.45440 * 179.97438 * 5 4 3 30 30 H 1.08001 * 120.81989 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.46879 * 29.97250 * 14 13 12 32 32 H 1.08997 * 109.47676 * 149.97428 * 14 13 12 33 33 H 1.00896 * 111.00014 * 56.04320 * 15 14 13 34 34 H 1.09004 * 109.46812 * 299.99526 * 16 15 14 35 35 H 1.08997 * 109.47337 * 59.99472 * 16 15 14 36 36 H 0.96991 * 120.00487 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3199 2.3137 0.0005 5 6 1.8768 3.5097 0.0060 6 6 3.2521 3.6572 0.0119 7 17 3.9634 5.2408 0.0197 8 6 4.0573 2.5289 0.0117 9 6 3.4426 1.2756 0.0058 10 6 4.2571 0.0363 0.0058 11 7 3.8041 -1.1909 0.0012 12 8 4.7284 -1.9761 0.0022 13 6 5.8905 -1.3157 0.0082 14 6 7.2677 -1.9275 0.0119 15 7 7.7102 -2.1294 1.3981 16 6 9.0519 -2.7263 1.4408 17 6 9.4712 -2.9173 2.8755 18 1 8.8076 -2.6243 3.6757 19 6 10.7020 -3.4663 3.1669 20 7 11.5098 -3.8236 2.1925 21 14 11.2221 -3.7025 4.9453 22 1 10.1415 -3.2242 5.8448 23 1 11.4755 -5.1434 5.1998 24 1 12.4622 -2.9282 5.2054 25 7 5.6076 -0.0368 0.0050 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2485 4.3881 0.0058 30 1 5.1336 2.6172 0.0167 31 1 7.2402 -2.8873 -0.5041 32 1 7.9630 -1.2607 -0.4980 33 1 7.0480 -2.6921 1.9107 34 1 9.0363 -3.6916 0.9348 35 1 9.7597 -2.0653 0.9407 36 1 12.3755 -4.2101 2.3973 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211455142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:25 Heat of formation + Delta-G solvation = 70.121259 kcal Electronic energy + Delta-G solvation = -23599.402912 eV Core-core repulsion = 19727.833069 eV Total energy + Delta-G solvation = -3871.569843 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.42220 -41.14297 -38.43538 -36.86450 -36.19848 -35.71855 -33.46796 -32.61822 -31.86618 -30.70549 -27.98189 -27.63123 -25.51150 -25.09628 -23.54947 -23.02714 -21.75802 -21.32281 -18.84787 -17.98609 -17.82231 -17.60884 -16.66194 -16.43952 -16.35604 -15.40866 -15.23124 -14.70690 -14.61158 -14.30203 -14.01663 -13.85879 -13.48457 -13.30490 -12.79759 -12.59238 -12.21993 -12.16571 -12.06779 -11.66475 -11.61944 -11.43763 -11.34004 -10.98388 -10.84037 -10.81377 -10.55349 -10.32590 -10.07261 -9.70165 -9.31198 -8.70143 -8.57575 -7.62018 -6.11764 -4.14086 0.15987 0.60208 1.34857 1.61451 2.33967 2.61534 2.93319 3.22732 3.27957 3.28663 3.35690 3.40873 3.77315 3.90877 4.24819 4.37764 4.49337 4.72867 4.91993 4.95915 4.98575 5.14000 5.24791 5.25584 5.34339 5.38271 5.54676 5.64840 5.71934 5.87020 6.07552 6.71011 6.98019 7.15959 7.21167 7.62234 7.96623 8.09916 8.22611 8.37298 8.93812 9.51284 10.99316 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.002534 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.944507 B =11047.791928 C =12157.394504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.278 6.278 3 C 0.354 3.646 4 N -0.525 5.525 5 C 0.171 3.829 6 C -0.132 4.132 7 Cl -0.044 7.044 8 C 0.012 3.988 9 C -0.071 4.071 10 C 0.204 3.796 11 N -0.354 5.354 12 O 0.080 5.920 13 C 0.209 3.791 14 C 0.147 3.853 15 N -0.681 5.681 16 C 0.195 3.805 17 C -0.517 4.517 18 H 0.064 0.936 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.901 3.099 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 N -0.465 5.465 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.175 0.825 30 H 0.167 0.833 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.336 0.664 34 H -0.005 1.005 35 H 0.035 0.965 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 13.019 -7.819 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.182 6.182 3 C 0.173 3.827 4 N -0.248 5.248 5 C 0.013 3.987 6 C -0.162 4.162 7 Cl -0.016 7.016 8 C -0.016 4.016 9 C -0.076 4.076 10 C -0.066 4.066 11 N -0.059 5.059 12 O 0.018 5.982 13 C -0.013 4.013 14 C 0.015 3.985 15 N -0.314 5.314 16 C 0.070 3.930 17 C -0.555 4.555 18 H 0.083 0.917 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 N -0.198 5.198 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.192 0.808 30 H 0.184 0.816 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.013 0.987 35 H 0.053 0.947 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.951 13.552 -7.803 26.952 hybrid contribution 1.032 -0.808 0.689 1.481 sum -20.919 12.744 -7.114 25.507 Atomic orbital electron populations 1.22997 0.76746 1.03621 1.02530 1.86481 1.23085 1.22758 1.85925 1.19840 0.88001 0.85495 0.89334 1.67604 1.38965 0.97936 1.20339 1.22563 0.90828 0.94492 0.90852 1.21657 0.94193 0.88141 1.12176 1.98394 1.83665 1.22372 1.97136 1.21482 1.02058 0.88155 0.89860 1.17115 0.88706 0.89940 1.11882 1.23214 0.87944 0.92015 1.03470 1.75054 1.10430 1.00887 1.19543 1.85317 1.12515 1.35082 1.65272 1.29056 0.92368 0.86110 0.93740 1.20534 0.83007 0.99540 0.95392 1.60790 1.06999 1.56116 1.07494 1.19653 0.82669 0.92625 0.98081 1.21146 1.01862 1.40681 0.91839 0.91744 1.24967 0.96375 0.95357 0.97720 1.69953 1.09625 1.42470 1.31487 0.86395 0.78605 0.77679 0.84475 1.19615 1.21024 1.20911 1.72002 1.10175 1.17417 1.20220 0.91966 0.92017 0.88082 0.80827 0.81568 0.91876 0.86820 0.84709 0.98703 0.94655 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.28 -3.52 8.85 -18.49 -0.16 -3.68 16 3 C 0.35 4.46 7.50 -16.76 -0.13 4.34 16 4 N -0.52 -5.60 9.21 -13.03 -0.12 -5.72 16 5 C 0.17 1.48 10.96 -17.48 -0.19 1.28 16 6 C -0.13 -1.25 6.34 -39.41 -0.25 -1.50 16 7 Cl -0.04 -0.37 28.98 -51.86 -1.50 -1.88 16 8 C 0.01 0.13 9.63 -38.94 -0.37 -0.24 16 9 C -0.07 -0.96 5.91 -104.61 -0.62 -1.58 16 10 C 0.20 3.22 7.79 -156.10 -1.22 2.00 16 11 N -0.35 -5.75 10.73 30.97 0.33 -5.42 16 12 O 0.08 1.26 11.29 18.06 0.20 1.47 16 13 C 0.21 3.30 8.01 -12.98 -0.10 3.19 16 14 C 0.15 2.31 6.31 -4.97 -0.03 2.28 16 15 N -0.68 -13.54 6.48 -116.33 -0.75 -14.29 16 16 C 0.20 4.73 5.44 -4.98 -0.03 4.71 16 17 C -0.52 -14.02 9.32 -34.44 -0.32 -14.34 16 18 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -25.74 13.29 55.43 0.74 -25.01 16 21 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 N -0.46 -7.63 11.33 -9.88 -0.11 -7.74 16 26 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.17 1.85 7.95 -52.49 -0.42 1.43 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.34 6.43 8.71 -39.29 -0.34 6.09 16 34 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -30.84 341.82 -7.24 -38.07 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.68 Total: -0.08 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.31 Total: 2.99 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.08 Total: -58.17 kcal Atomic # 8 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.84 -7.24 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211455142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.196 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds