Wall clock time and date at job start Tue Mar 31 2020 14:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35598 * 116.99902 * 2 1 4 4 N 1.32184 * 119.75416 * 0.02562 * 3 2 1 5 5 C 1.31930 * 121.78503 * 179.72238 * 4 3 2 6 6 C 1.38323 * 121.09146 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 120.30901 * 180.02562 * 6 5 4 8 8 C 1.38609 * 119.38781 * 0.02562 * 6 5 4 9 9 C 1.39599 * 118.36387 * 359.97438 * 8 6 5 10 10 C 1.48293 * 120.55911 * 180.02562 * 9 8 6 11 11 N 1.30818 * 126.42236 * 179.97438 * 10 9 8 12 12 O 1.21286 * 110.08322 * 179.97438 * 11 10 9 13 13 C 1.33662 * 110.04457 * 0.02562 * 12 11 10 14 14 C 1.50701 * 126.43694 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.47187 * 269.98232 * 14 13 12 16 16 C 1.46907 * 110.99850 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.46905 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00113 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00189 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99829 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00477 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47195 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47379 * 119.99434 * 21 19 17 24 24 H 1.48497 * 109.47274 * 240.00198 * 21 19 17 25 25 N 1.30977 * 107.13613 * 359.72781 * 13 12 11 26 26 H 1.08998 * 109.46742 * 299.99584 * 1 2 3 27 27 H 1.09000 * 109.47170 * 59.99382 * 1 2 3 28 28 H 1.09003 * 109.46691 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.45440 * 179.97438 * 5 4 3 30 30 H 1.08001 * 120.81989 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.46879 * 29.97250 * 14 13 12 32 32 H 1.08997 * 109.47676 * 149.97428 * 14 13 12 33 33 H 1.00896 * 111.00014 * 56.04320 * 15 14 13 34 34 H 1.09004 * 109.46812 * 299.99526 * 16 15 14 35 35 H 1.08997 * 109.47337 * 59.99472 * 16 15 14 36 36 H 0.96991 * 120.00487 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3199 2.3137 0.0005 5 6 1.8768 3.5097 0.0060 6 6 3.2521 3.6572 0.0119 7 17 3.9634 5.2408 0.0197 8 6 4.0573 2.5289 0.0117 9 6 3.4426 1.2756 0.0058 10 6 4.2571 0.0363 0.0058 11 7 3.8041 -1.1909 0.0012 12 8 4.7284 -1.9761 0.0022 13 6 5.8905 -1.3157 0.0082 14 6 7.2677 -1.9275 0.0119 15 7 7.7102 -2.1294 1.3981 16 6 9.0519 -2.7263 1.4408 17 6 9.4712 -2.9173 2.8755 18 1 8.8076 -2.6243 3.6757 19 6 10.7020 -3.4663 3.1669 20 7 11.5098 -3.8236 2.1925 21 14 11.2221 -3.7025 4.9453 22 1 10.1415 -3.2242 5.8448 23 1 11.4755 -5.1434 5.1998 24 1 12.4622 -2.9282 5.2054 25 7 5.6076 -0.0368 0.0050 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2485 4.3881 0.0058 30 1 5.1336 2.6172 0.0167 31 1 7.2402 -2.8873 -0.5041 32 1 7.9630 -1.2607 -0.4980 33 1 7.0480 -2.6921 1.9107 34 1 9.0363 -3.6916 0.9348 35 1 9.7597 -2.0653 0.9407 36 1 12.3755 -4.2101 2.3973 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211455142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:25 Heat of formation + Delta-G solvation = 46.454239 kcal Electronic energy + Delta-G solvation = -23600.429191 eV Core-core repulsion = 19727.833069 eV Total energy + Delta-G solvation = -3872.596122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.64871 -41.97885 -39.25764 -37.66643 -37.58746 -37.01921 -34.98876 -34.06295 -33.08184 -31.64917 -29.65093 -28.38141 -26.80562 -26.47809 -24.55610 -24.06336 -23.56483 -22.51142 -19.69199 -19.22735 -19.08115 -18.58224 -18.28197 -17.41626 -17.26130 -16.97458 -16.41443 -16.26491 -15.51246 -15.36029 -15.11637 -15.06515 -14.80340 -14.38407 -14.12016 -13.84837 -13.43644 -13.33226 -13.13092 -13.04202 -12.84152 -12.67426 -12.64851 -12.37201 -12.20097 -12.10483 -12.06352 -11.68698 -11.31530 -11.13713 -10.73021 -10.64382 -9.56521 -9.27992 -8.21177 -6.30534 -0.74183 -0.23949 0.13309 0.86155 1.20832 1.43551 1.45173 1.57606 1.66186 1.84200 2.22351 2.35263 2.42668 2.78235 2.99486 3.13685 3.47129 3.54536 3.61361 3.86102 3.87947 4.23819 4.34276 4.36850 4.39431 4.45149 4.58747 4.65940 4.67608 4.80942 4.96034 5.07216 5.26774 5.60192 5.91608 5.98855 6.30962 6.34281 6.55544 6.86240 7.00925 7.39532 8.90204 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.002534 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.944507 B =11047.791928 C =12157.394504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.301 6.301 3 C 0.349 3.651 4 N -0.525 5.525 5 C 0.186 3.814 6 C -0.130 4.130 7 Cl -0.031 7.031 8 C 0.013 3.987 9 C -0.104 4.104 10 C 0.205 3.795 11 N -0.368 5.368 12 O 0.079 5.921 13 C 0.210 3.790 14 C 0.152 3.848 15 N -0.686 5.686 16 C 0.210 3.790 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.279 1.279 25 N -0.478 5.478 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.213 0.787 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.340 0.660 34 H -0.018 1.018 35 H 0.015 0.985 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.129 14.257 -7.371 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.206 6.206 3 C 0.169 3.831 4 N -0.249 5.249 5 C 0.028 3.972 6 C -0.159 4.159 7 Cl -0.002 7.002 8 C -0.015 4.015 9 C -0.109 4.109 10 C -0.065 4.065 11 N -0.074 5.074 12 O 0.019 5.981 13 C -0.012 4.012 14 C 0.021 3.979 15 N -0.319 5.319 16 C 0.083 3.917 17 C -0.574 4.574 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.205 1.205 25 N -0.211 5.211 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.229 0.771 30 H 0.181 0.819 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.000 1.000 35 H 0.033 0.967 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.250 14.782 -7.362 28.518 hybrid contribution 1.319 -1.060 0.498 1.764 sum -21.931 13.721 -6.864 26.765 Atomic orbital electron populations 1.23228 0.74892 1.04992 1.03127 1.86448 1.25082 1.23220 1.85838 1.19916 0.87835 0.86078 0.89291 1.67719 1.38627 0.98030 1.20558 1.23206 0.90949 0.94909 0.88130 1.21682 0.94445 0.88137 1.11640 1.98405 1.83602 1.21200 1.97037 1.21509 1.02167 0.88235 0.89571 1.17259 0.89194 0.89704 1.14770 1.23624 0.87818 0.92697 1.02344 1.75038 1.10512 1.01242 1.20637 1.85300 1.12390 1.35044 1.65394 1.28906 0.92317 0.86095 0.93861 1.20513 0.83124 1.00897 0.93318 1.60569 1.05504 1.55603 1.10259 1.19278 0.84414 0.91598 0.96368 1.21512 1.02142 1.40604 0.93140 0.92075 1.25813 0.96448 0.95035 1.01899 1.70053 1.10079 1.43227 1.33552 0.85364 0.78168 0.77795 0.79449 1.19082 1.20317 1.20519 1.71999 1.10830 1.17696 1.20621 0.91451 0.91236 0.86435 0.77098 0.81884 0.89507 0.86228 0.84229 1.00010 0.96667 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.38 113.37 1.18 1.68 16 2 O -0.30 -7.47 8.85 -89.08 -0.79 -8.26 16 3 C 0.35 8.55 7.50 85.06 0.64 9.18 16 4 N -0.53 -10.24 9.21 -308.09 -2.84 -13.08 16 5 C 0.19 2.74 10.96 84.70 0.93 3.67 16 6 C -0.13 -2.21 6.34 22.38 0.14 -2.07 16 7 Cl -0.03 -0.46 28.98 -2.72 -0.08 -0.54 16 8 C 0.01 0.28 9.63 22.69 0.22 0.50 16 9 C -0.10 -2.78 5.91 -19.86 -0.12 -2.90 16 10 C 0.21 6.51 7.79 137.23 1.07 7.58 16 11 N -0.37 -12.03 10.73 -59.08 -0.63 -12.66 16 12 O 0.08 2.49 11.29 74.67 0.84 3.34 16 13 C 0.21 6.60 8.01 88.35 0.71 7.31 16 14 C 0.15 4.76 6.31 85.56 0.54 5.29 16 15 N -0.69 -27.33 6.48 -521.96 -3.38 -30.71 16 16 C 0.21 10.33 5.44 85.55 0.47 10.79 16 17 C -0.54 -29.23 9.32 25.60 0.24 -28.99 16 18 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 19 C 0.01 0.38 5.46 84.65 0.46 0.84 16 20 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 21 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 N -0.48 -15.72 11.33 -302.48 -3.43 -19.15 16 26 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 27 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.16 3.61 7.95 -2.91 -0.02 3.58 16 31 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.34 13.03 8.71 -89.70 -0.78 12.25 16 34 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.27 14.43 8.31 -92.72 -0.77 13.66 16 Total: -1.00 -65.70 341.82 -1.16 -66.87 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.36 Total: 9.47 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 6.47 Total: 12.88 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -10.00 Total: -129.02 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.06 Total: -4.92 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -65.70 -1.16 -66.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211455142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.319 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds