Wall clock time and date at job start Tue Mar 31 2020 14:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31664 * 1 3 3 Si 1.86804 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47384 * 300.00700 * 3 2 1 6 6 H 1.48500 * 109.47150 * 60.00687 * 3 2 1 7 7 C 1.38478 * 120.00607 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00632 * 179.97438 * 7 2 1 9 9 O 1.34818 * 119.99355 * 359.97438 * 7 2 1 10 10 C 1.35669 * 116.99702 * 174.93555 * 9 7 2 11 11 C 1.38602 * 120.16297 * 5.62265 * 10 9 7 12 12 C 1.38216 * 120.09784 * 180.25474 * 11 10 9 13 13 C 1.38540 * 120.44418 * 359.73738 * 12 11 10 14 14 C 1.37867 * 120.33183 * 0.02562 * 13 12 11 15 15 C 1.39854 * 119.88253 * 359.97438 * 14 13 12 16 16 N 1.36156 * 120.21963 * 179.97438 * 15 14 13 17 17 C 1.33213 * 119.99748 * 94.87329 * 16 15 14 18 18 C 1.41993 * 120.68306 * 354.87207 * 17 16 15 19 19 C 1.34821 * 119.23263 * 179.97438 * 18 17 16 20 20 N 1.36072 * 120.71275 * 0.02562 * 19 18 17 21 21 H 0.97004 * 119.26955 * 179.97438 * 20 19 18 22 22 C 1.36082 * 121.47450 * 359.97438 * 20 19 18 23 23 C 1.34817 * 120.70744 * 0.02562 * 22 20 19 24 24 C 1.50701 * 120.37916 * 179.97438 * 23 22 20 25 25 F 1.39900 * 109.47637 * 0.02562 * 24 23 22 26 26 F 1.39895 * 109.47304 * 120.02102 * 24 23 22 27 27 F 1.39908 * 109.46721 * 240.01543 * 24 23 22 28 28 H 0.97003 * 120.00272 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.95149 * 359.96692 * 11 10 9 30 30 H 1.08004 * 119.77523 * 179.75960 * 12 11 10 31 31 H 1.08001 * 119.83665 * 180.02562 * 13 12 11 32 32 H 1.07998 * 120.06212 * 179.97438 * 14 13 12 33 33 H 1.07997 * 120.38609 * 359.95419 * 18 17 16 34 34 H 1.08000 * 119.64390 * 179.71984 * 19 18 17 35 35 H 1.08000 * 119.64639 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6178 0.0000 4 1 3.7106 1.3465 -0.0006 5 1 1.8917 2.3966 -1.2123 6 1 1.8920 2.3964 1.2126 7 6 2.0092 -1.1992 -0.0005 8 1 3.0891 -1.1992 -0.0010 9 8 1.3351 -2.3667 -0.0005 10 6 2.0699 -3.5021 -0.1078 11 6 3.4544 -3.4395 -0.0939 12 6 4.2018 -4.5966 -0.2086 13 6 3.5766 -5.8266 -0.3326 14 6 2.2005 -5.9103 -0.3435 15 6 1.4308 -4.7483 -0.2284 16 7 0.0714 -4.8229 -0.2390 17 6 -0.6016 -4.8770 0.9094 18 6 0.0858 -4.9670 2.1485 19 6 -0.6245 -5.0196 3.2932 20 7 -1.9846 -4.9878 3.2692 21 1 -2.4748 -5.0272 4.1054 22 6 -2.6728 -4.9019 2.0983 23 6 -2.0212 -4.8459 0.9194 24 6 -2.7907 -4.7515 -0.3729 25 9 -4.1625 -4.7367 -0.0989 26 9 -2.4362 -3.5751 -1.0419 27 9 -2.4876 -5.8550 -1.1778 28 1 -0.4851 0.8401 0.0004 29 1 3.9500 -2.4848 0.0019 30 1 5.2804 -4.5413 -0.2011 31 1 4.1701 -6.7246 -0.4211 32 1 1.7177 -6.8715 -0.4409 33 1 1.1652 -4.9934 2.1738 34 1 -0.1085 -5.0927 4.2392 35 1 -3.7524 -4.8791 2.1136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212595434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:29 Heat of formation + Delta-G solvation = -84.280147 kcal Electronic energy + Delta-G solvation = -27642.203335 eV Core-core repulsion = 23192.221503 eV Total energy + Delta-G solvation = -4449.981832 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.52576 -47.13697 -46.80282 -40.36220 -38.92439 -36.45744 -35.21751 -32.51399 -32.14620 -31.09689 -29.02410 -27.70244 -25.81720 -25.24683 -23.36515 -22.25092 -21.37397 -20.39134 -19.31167 -18.04763 -17.82307 -17.78083 -17.31372 -16.77394 -16.15214 -15.77287 -14.70469 -14.57526 -14.46679 -14.21150 -13.99202 -13.82607 -13.75788 -13.54983 -13.39346 -13.21675 -13.05745 -13.00218 -12.97844 -12.58051 -12.08967 -11.63423 -11.58423 -11.27292 -11.12704 -10.95853 -10.79869 -10.49083 -10.29273 -9.74455 -9.63323 -9.21011 -8.74011 -7.64307 -7.10304 -6.74579 -6.32911 -3.91143 1.25559 1.51880 2.23992 2.48184 2.79514 3.15759 3.18616 3.23112 3.32690 3.74146 4.03278 4.29261 4.45512 4.60722 4.73039 4.80626 5.09337 5.14342 5.24388 5.39218 5.45474 5.74679 5.78581 5.83605 5.94833 6.11237 6.21201 6.44471 6.61079 6.82977 6.85396 6.97872 7.19106 7.21296 7.31014 7.48583 7.50479 7.87707 8.08754 8.85290 9.11596 9.85098 10.83843 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.005740 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.929216 B = 4876.990784 C = 6069.437922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.039 3.961 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.390 4.390 8 H 0.089 0.911 9 O -0.164 6.164 10 C 0.136 3.864 11 C -0.227 4.227 12 C -0.092 4.092 13 C -0.198 4.198 14 C -0.101 4.101 15 C 0.039 3.961 16 N -0.493 5.493 17 C 0.256 3.744 18 C -0.199 4.199 19 C 0.099 3.901 20 N -0.604 5.604 21 H 0.420 0.580 22 C 0.180 3.820 23 C -0.250 4.250 24 C 0.533 3.467 25 F -0.196 7.196 26 F -0.156 7.156 27 F -0.174 7.174 28 H 0.266 0.734 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 -10.751 9.727 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.467 4.467 8 H 0.107 0.893 9 O -0.067 6.067 10 C 0.080 3.920 11 C -0.247 4.247 12 C -0.111 4.111 13 C -0.217 4.217 14 C -0.121 4.121 15 C -0.062 4.062 16 N -0.202 5.202 17 C 0.083 3.917 18 C -0.225 4.225 19 C -0.027 4.027 20 N -0.211 5.211 21 H 0.255 0.745 22 C 0.049 3.951 23 C -0.261 4.261 24 C 0.478 3.522 25 F -0.178 7.178 26 F -0.137 7.137 27 F -0.156 7.156 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.852 -10.497 8.677 14.823 hybrid contribution 0.825 1.004 0.665 1.460 sum -5.028 -9.493 9.342 14.236 Atomic orbital electron populations 1.70141 1.05700 1.27081 1.46099 1.25224 0.95807 0.98576 0.96869 0.85716 0.79153 0.80801 0.78142 1.19208 1.20199 1.20329 1.21321 0.91699 0.81090 1.52550 0.89337 1.84005 1.33648 1.10880 1.78150 1.19635 0.90066 0.87614 0.94642 1.21026 0.93345 0.98946 1.11361 1.20723 0.98254 0.92344 0.99771 1.20414 0.93908 0.96812 1.10592 1.20778 0.93358 0.95573 1.02409 1.17881 0.88752 0.90878 1.08689 1.69374 1.06509 1.20944 1.23387 1.18575 0.90811 0.92433 0.89911 1.21695 1.01303 1.07746 0.91792 1.21568 0.82304 0.98538 1.00259 1.40975 1.06050 1.65834 1.08223 0.74474 1.21350 0.97922 0.91074 0.84753 1.19098 0.93792 1.21169 0.92054 1.17572 0.75248 0.74778 0.84566 1.93083 1.34318 1.96523 1.93874 1.93324 1.91361 1.47253 1.81797 1.93186 1.92840 1.53984 1.75566 0.92364 0.85623 0.87755 0.87736 0.87217 0.83693 0.82018 0.80903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.92 13.68 55.47 0.76 -25.16 16 2 C 0.04 1.12 5.49 -17.54 -0.10 1.03 16 3 Si 0.94 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.39 -11.35 9.48 30.82 0.29 -11.06 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.16 -4.91 9.51 0.33 0.00 -4.91 16 10 C 0.14 3.53 6.70 -38.57 -0.26 3.27 16 11 C -0.23 -5.25 9.16 -39.46 -0.36 -5.61 16 12 C -0.09 -1.81 10.03 -39.48 -0.40 -2.21 16 13 C -0.20 -3.72 10.02 -39.61 -0.40 -4.12 16 14 C -0.10 -2.06 10.00 -39.11 -0.39 -2.45 16 15 C 0.04 0.92 4.16 -84.46 -0.35 0.56 16 16 N -0.49 -11.68 9.17 -8.54 -0.08 -11.76 16 17 C 0.26 5.13 6.56 -84.39 -0.55 4.57 16 18 C -0.20 -3.31 9.25 -39.36 -0.36 -3.68 16 19 C 0.10 1.09 11.17 -16.88 -0.19 0.90 16 20 N -0.60 -5.21 5.28 -12.99 -0.07 -5.28 16 21 H 0.42 1.60 8.90 -40.82 -0.36 1.23 16 22 C 0.18 2.02 10.60 -16.88 -0.18 1.84 16 23 C -0.25 -4.23 5.37 -104.40 -0.56 -4.79 16 24 C 0.53 9.68 3.01 36.01 0.11 9.79 16 25 F -0.20 -2.90 15.96 2.25 0.04 -2.86 16 26 F -0.16 -3.55 17.00 2.25 0.04 -3.51 16 27 F -0.17 -3.29 17.00 2.25 0.04 -3.25 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 30 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.15 2.57 7.05 -52.49 -0.37 2.20 16 34 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.17 1.27 7.09 -52.49 -0.37 0.90 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -37.91 323.89 -5.61 -43.53 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.50 Total: 4.05 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -3.70 Total: -11.94 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.61 Total: -42.19 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: 0.00 Total: -4.91 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 0.11 Total: -9.63 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.91 -5.61 -43.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212595434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.755 kcal (2) G-P(sol) polarization free energy of solvation -37.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds