Wall clock time and date at job start Tue Mar 31 2020 14:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31664 * 1 3 3 Si 1.86804 * 119.99793 * 2 1 4 4 H 1.48501 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47384 * 300.00700 * 3 2 1 6 6 H 1.48500 * 109.47150 * 60.00687 * 3 2 1 7 7 C 1.38478 * 120.00607 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00632 * 179.97438 * 7 2 1 9 9 O 1.34818 * 119.99355 * 359.97438 * 7 2 1 10 10 C 1.35669 * 116.99702 * 174.93555 * 9 7 2 11 11 C 1.38602 * 120.16297 * 5.62265 * 10 9 7 12 12 C 1.38216 * 120.09784 * 180.25474 * 11 10 9 13 13 C 1.38540 * 120.44418 * 359.73738 * 12 11 10 14 14 C 1.37867 * 120.33183 * 0.02562 * 13 12 11 15 15 C 1.39854 * 119.88253 * 359.97438 * 14 13 12 16 16 N 1.36156 * 120.21963 * 179.97438 * 15 14 13 17 17 C 1.33213 * 119.99748 * 94.87329 * 16 15 14 18 18 C 1.41993 * 120.68306 * 354.87207 * 17 16 15 19 19 C 1.34821 * 119.23263 * 179.97438 * 18 17 16 20 20 N 1.36072 * 120.71275 * 0.02562 * 19 18 17 21 21 H 0.97004 * 119.26955 * 179.97438 * 20 19 18 22 22 C 1.36082 * 121.47450 * 359.97438 * 20 19 18 23 23 C 1.34817 * 120.70744 * 0.02562 * 22 20 19 24 24 C 1.50701 * 120.37916 * 179.97438 * 23 22 20 25 25 F 1.39900 * 109.47637 * 0.02562 * 24 23 22 26 26 F 1.39895 * 109.47304 * 120.02102 * 24 23 22 27 27 F 1.39908 * 109.46721 * 240.01543 * 24 23 22 28 28 H 0.97003 * 120.00272 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.95149 * 359.96692 * 11 10 9 30 30 H 1.08004 * 119.77523 * 179.75960 * 12 11 10 31 31 H 1.08001 * 119.83665 * 180.02562 * 13 12 11 32 32 H 1.07998 * 120.06212 * 179.97438 * 14 13 12 33 33 H 1.07997 * 120.38609 * 359.95419 * 18 17 16 34 34 H 1.08000 * 119.64390 * 179.71984 * 19 18 17 35 35 H 1.08000 * 119.64639 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2506 1.6178 0.0000 4 1 3.7106 1.3465 -0.0006 5 1 1.8917 2.3966 -1.2123 6 1 1.8920 2.3964 1.2126 7 6 2.0092 -1.1992 -0.0005 8 1 3.0891 -1.1992 -0.0010 9 8 1.3351 -2.3667 -0.0005 10 6 2.0699 -3.5021 -0.1078 11 6 3.4544 -3.4395 -0.0939 12 6 4.2018 -4.5966 -0.2086 13 6 3.5766 -5.8266 -0.3326 14 6 2.2005 -5.9103 -0.3435 15 6 1.4308 -4.7483 -0.2284 16 7 0.0714 -4.8229 -0.2390 17 6 -0.6016 -4.8770 0.9094 18 6 0.0858 -4.9670 2.1485 19 6 -0.6245 -5.0196 3.2932 20 7 -1.9846 -4.9878 3.2692 21 1 -2.4748 -5.0272 4.1054 22 6 -2.6728 -4.9019 2.0983 23 6 -2.0212 -4.8459 0.9194 24 6 -2.7907 -4.7515 -0.3729 25 9 -4.1625 -4.7367 -0.0989 26 9 -2.4362 -3.5751 -1.0419 27 9 -2.4876 -5.8550 -1.1778 28 1 -0.4851 0.8401 0.0004 29 1 3.9500 -2.4848 0.0019 30 1 5.2804 -4.5413 -0.2011 31 1 4.1701 -6.7246 -0.4211 32 1 1.7177 -6.8715 -0.4409 33 1 1.1652 -4.9934 2.1738 34 1 -0.1085 -5.0927 4.2392 35 1 -3.7524 -4.8791 2.1136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212595434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:29 Heat of formation + Delta-G solvation = -111.953797 kcal Electronic energy + Delta-G solvation = -27643.403355 eV Core-core repulsion = 23192.221503 eV Total energy + Delta-G solvation = -4451.181852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.94805 -48.50917 -48.36096 -41.55231 -40.59860 -38.20709 -36.62201 -34.22378 -33.70020 -32.39461 -30.70256 -29.25603 -27.28708 -27.08428 -24.73573 -23.47703 -23.13628 -21.90805 -20.44981 -19.74233 -19.40146 -19.25300 -18.92261 -18.04180 -17.54833 -17.16023 -16.40015 -16.31922 -15.82191 -15.57594 -15.45882 -15.24741 -15.21287 -15.12107 -14.85060 -14.84439 -14.57343 -14.54025 -14.41983 -14.28231 -13.54411 -13.30387 -13.14096 -12.83171 -12.62301 -12.58508 -12.48922 -12.15363 -11.88153 -11.32218 -10.91932 -10.82279 -10.75961 -9.32363 -8.56582 -8.39952 -8.31014 -6.06509 0.11517 0.33778 0.62564 0.79254 1.31535 1.41080 1.50138 1.71825 2.10020 2.18035 2.45505 2.86500 3.01917 3.17256 3.24545 3.58816 3.61417 3.68376 3.88277 4.17507 4.23138 4.23921 4.30429 4.43296 4.67965 4.68733 4.77267 4.96129 5.11652 5.17401 5.21029 5.61854 5.68540 5.73868 5.80578 5.82044 6.06462 6.25233 6.36465 7.02327 7.43810 7.92396 8.82362 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.005740 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.929216 B = 4876.990784 C = 6069.437922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.023 4.023 3 Si 1.015 2.985 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.412 4.412 8 H 0.094 0.906 9 O -0.215 6.215 10 C 0.085 3.915 11 C -0.234 4.234 12 C -0.098 4.098 13 C -0.167 4.167 14 C -0.116 4.116 15 C 0.052 3.948 16 N -0.582 5.582 17 C 0.261 3.739 18 C -0.263 4.263 19 C 0.156 3.844 20 N -0.569 5.569 21 H 0.453 0.547 22 C 0.228 3.772 23 C -0.310 4.310 24 C 0.533 3.467 25 F -0.175 7.175 26 F -0.194 7.194 27 F -0.185 7.185 28 H 0.268 0.732 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.221 0.779 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -12.307 13.136 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.220 4.220 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.112 0.888 9 O -0.122 6.122 10 C 0.033 3.967 11 C -0.254 4.254 12 C -0.116 4.116 13 C -0.186 4.186 14 C -0.136 4.136 15 C -0.050 4.050 16 N -0.296 5.296 17 C 0.093 3.907 18 C -0.289 4.289 19 C 0.028 3.972 20 N -0.176 5.176 21 H 0.296 0.704 22 C 0.094 3.906 23 C -0.321 4.321 24 C 0.478 3.522 25 F -0.157 7.157 26 F -0.175 7.175 27 F -0.166 7.166 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.237 0.763 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.890 -12.122 12.167 18.156 hybrid contribution 0.646 1.103 -0.150 1.287 sum -5.244 -11.019 12.016 17.126 Atomic orbital electron populations 1.70310 1.07786 1.28082 1.49060 1.26494 0.96829 1.02410 0.96245 0.84583 0.78169 0.75203 0.78529 1.17712 1.19844 1.18836 1.21799 0.92260 0.81986 1.52816 0.88826 1.83978 1.34999 1.11789 1.81397 1.20275 0.91361 0.87780 0.97258 1.21183 0.92750 1.00067 1.11386 1.21077 0.99975 0.91282 0.99309 1.20942 0.93454 0.98075 1.06160 1.21123 0.94262 0.95393 1.02871 1.18253 0.89855 0.90696 1.06154 1.69163 1.06166 1.28826 1.25418 1.19081 0.92209 0.89103 0.90337 1.21543 1.00919 1.13794 0.92657 1.22260 0.82872 0.91527 1.00495 1.41302 1.05718 1.61387 1.09178 0.70400 1.21995 0.99875 0.85289 0.83474 1.19142 0.92829 1.26735 0.93375 1.17736 0.76282 0.73248 0.84895 1.93101 1.32563 1.96359 1.93630 1.93246 1.91902 1.49546 1.82844 1.93150 1.93074 1.54235 1.76176 0.92297 0.86604 0.83885 0.83336 0.85819 0.85912 0.76300 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.95 13.68 21.59 0.30 -58.65 16 2 C -0.02 -1.35 5.49 84.78 0.47 -0.89 16 3 Si 1.02 45.34 29.55 68.60 2.03 47.36 16 4 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.41 -25.66 9.48 67.88 0.64 -25.02 16 8 H 0.09 5.42 5.21 -2.92 -0.02 5.41 16 9 O -0.22 -14.02 9.51 -21.72 -0.21 -14.22 16 10 C 0.09 4.75 6.70 22.92 0.15 4.91 16 11 C -0.23 -11.31 9.16 22.35 0.20 -11.11 16 12 C -0.10 -3.76 10.03 22.34 0.22 -3.53 16 13 C -0.17 -6.02 10.02 22.25 0.22 -5.80 16 14 C -0.12 -4.83 10.00 22.57 0.23 -4.61 16 15 C 0.05 2.61 4.16 39.43 0.16 2.77 16 16 N -0.58 -29.71 9.17 -180.94 -1.66 -31.37 16 17 C 0.26 10.87 6.56 40.80 0.27 11.14 16 18 C -0.26 -8.71 9.25 22.42 0.21 -8.51 16 19 C 0.16 2.77 11.17 83.25 0.93 3.70 16 20 N -0.57 -6.57 5.28 -195.00 -1.03 -7.60 16 21 H 0.45 -0.05 8.90 -92.70 -0.83 -0.87 16 22 C 0.23 4.22 10.60 83.25 0.88 5.11 16 23 C -0.31 -10.45 5.37 -19.72 -0.11 -10.55 16 24 C 0.53 20.06 3.01 71.24 0.21 20.28 16 25 F -0.18 -5.02 15.96 44.97 0.72 -4.30 16 26 F -0.19 -9.55 17.00 44.97 0.76 -8.79 16 27 F -0.18 -7.36 17.00 44.97 0.76 -6.60 16 28 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 29 H 0.12 5.65 5.64 -2.91 -0.02 5.63 16 30 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 31 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 32 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.12 4.57 7.05 -2.91 -0.02 4.55 16 34 H 0.22 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.22 1.94 7.09 -2.91 -0.02 1.92 16 Total: -1.00 -98.15 323.89 6.73 -91.42 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.36 Total: 14.85 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 4.70 Total: -22.11 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -2.39 Total: -97.62 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.21 Total: -14.22 kcal Atomic # 9 Polarization: -21.93 SS G_CDS: 2.25 Total: -19.68 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -98.15 6.73 -91.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212595434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.534 kcal (2) G-P(sol) polarization free energy of solvation -98.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds