Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48497 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46819 * 299.99955 * 3 2 1 6 6 H 1.48494 * 109.47251 * 59.99482 * 3 2 1 7 7 C 1.38623 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00492 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99611 * 0.27529 * 7 2 1 10 10 C 1.35790 * 116.99708 * 174.65501 * 9 7 2 11 11 C 1.38713 * 120.10281 * 5.65478 * 10 9 7 12 12 C 1.38180 * 120.00521 * 179.69792 * 11 10 9 13 13 C 1.38360 * 120.21036 * 0.60646 * 12 11 10 14 14 C 1.38176 * 120.20937 * 359.67189 * 13 12 11 15 15 C 1.38784 * 119.98706 * 0.02690 * 14 13 12 16 16 N 1.39791 * 120.10235 * 180.02562 * 15 14 13 17 17 C 1.39706 * 120.00003 * 254.81665 * 16 15 14 18 18 C 1.38958 * 120.49149 * 355.00935 * 17 16 15 19 19 N 1.31782 * 120.64624 * 179.74789 * 18 17 16 20 20 C 1.31889 * 121.80431 * 0.54183 * 19 18 17 21 21 C 1.38241 * 120.93415 * 359.72348 * 20 19 18 22 22 C 1.38526 * 119.24580 * 0.02562 * 21 20 19 23 23 C 1.50706 * 120.82199 * 180.02562 * 22 21 20 24 24 F 1.39904 * 109.47146 * 359.97438 * 23 22 21 25 25 F 1.39898 * 109.46845 * 119.97704 * 23 22 21 26 26 F 1.39895 * 109.46738 * 239.97745 * 23 22 21 27 27 H 0.97003 * 119.99392 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00182 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.89939 * 180.32510 * 12 11 10 30 30 H 1.07998 * 119.89358 * 179.70086 * 13 12 11 31 31 H 1.07994 * 120.00765 * 180.02562 * 14 13 12 32 32 H 0.97004 * 119.99834 * 74.81806 * 16 15 14 33 33 H 1.07997 * 119.67658 * 0.02562 * 18 17 16 34 34 H 1.08003 * 119.53217 * 179.74598 * 20 19 18 35 35 H 1.08006 * 120.37655 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8911 2.3964 -1.2126 6 1 1.8911 2.3965 1.2124 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3349 -2.3679 -0.0046 10 6 2.0704 -3.5039 -0.1164 11 6 3.4559 -3.4399 -0.1010 12 6 4.2024 -4.5978 -0.2087 13 6 3.5724 -5.8221 -0.3447 14 6 2.1927 -5.8954 -0.3669 15 6 1.4347 -4.7385 -0.2531 16 7 0.0388 -4.8099 -0.2747 17 6 -0.6636 -4.4090 -1.4138 18 6 0.0055 -3.8416 -2.4914 19 7 -0.6534 -3.4669 -3.5694 20 6 -1.9617 -3.6027 -3.6667 21 6 -2.6977 -4.1536 -2.6343 22 6 -2.0459 -4.5663 -1.4837 23 6 -2.8132 -5.1721 -0.3367 24 9 -4.1740 -5.2177 -0.6584 25 9 -2.3469 -6.4691 -0.0971 26 9 -2.6310 -4.3917 0.8099 27 1 -0.4849 0.8401 -0.0004 28 1 3.9514 -2.4857 0.0004 29 1 5.2810 -4.5465 -0.1913 30 1 4.1608 -6.7233 -0.4334 31 1 1.7044 -6.8528 -0.4728 32 1 -0.4421 -5.1379 0.5013 33 1 1.0765 -3.7106 -2.4469 34 1 -2.4651 -3.2793 -4.5659 35 1 -3.7687 -4.2609 -2.7238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596110.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = -104.705906 kcal Electronic energy + Delta-G solvation = -27776.781322 eV Core-core repulsion = 23325.913763 eV Total energy + Delta-G solvation = -4450.867560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.03047 -47.56425 -47.44477 -40.23051 -39.10849 -36.74281 -35.36465 -32.72645 -32.37069 -30.33753 -29.19139 -27.88566 -26.29795 -25.47066 -23.23659 -22.30799 -21.70743 -21.03233 -18.62006 -18.38674 -18.32347 -18.11417 -17.52090 -16.75458 -16.15002 -15.17097 -14.98722 -14.90001 -14.68628 -14.41509 -14.37580 -13.98951 -13.97115 -13.90960 -13.64181 -13.61309 -13.54326 -13.44640 -13.27981 -12.81959 -12.02016 -11.86636 -11.78803 -11.47744 -11.25310 -11.10215 -10.99700 -10.59226 -10.42587 -9.61356 -9.49023 -9.28601 -8.95809 -8.35221 -7.54310 -7.24426 -6.55397 -4.14952 1.23740 1.59557 1.88837 2.16986 2.81346 3.06568 3.08452 3.13765 3.56470 3.86838 3.91284 4.04816 4.14060 4.33089 4.62050 4.92990 4.94878 5.03627 5.06439 5.27695 5.48980 5.50345 5.63119 5.75290 5.90925 6.04148 6.08522 6.25620 6.37018 6.50354 6.81198 6.89899 6.93803 7.15005 7.20784 7.40521 7.65584 7.82811 7.94250 8.35679 8.88761 9.52978 10.60295 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.005753 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.731533 B = 4865.952793 C = 6101.329744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.397 4.397 8 H 0.094 0.906 9 O -0.157 6.157 10 C 0.149 3.851 11 C -0.229 4.229 12 C -0.064 4.064 13 C -0.210 4.210 14 C -0.065 4.065 15 C 0.033 3.967 16 N -0.656 5.656 17 C 0.238 3.762 18 C 0.072 3.928 19 N -0.425 5.425 20 C 0.025 3.975 21 C -0.084 4.084 22 C -0.234 4.234 23 C 0.516 3.484 24 F -0.178 7.178 25 F -0.180 7.180 26 F -0.171 7.171 27 H 0.271 0.729 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.401 0.599 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -9.318 -2.526 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.473 4.473 8 H 0.112 0.888 9 O -0.058 6.058 10 C 0.092 3.908 11 C -0.249 4.249 12 C -0.082 4.082 13 C -0.229 4.229 14 C -0.085 4.085 15 C -0.060 4.060 16 N -0.278 5.278 17 C 0.129 3.871 18 C -0.094 4.094 19 N -0.133 5.133 20 C -0.130 4.130 21 C -0.104 4.104 22 C -0.248 4.248 23 C 0.461 3.539 24 F -0.159 7.159 25 F -0.162 7.162 26 F -0.153 7.153 27 H 0.081 0.919 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.238 0.762 33 H 0.179 0.821 34 H 0.174 0.826 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.773 -8.710 -3.173 9.438 hybrid contribution -0.321 0.374 1.396 1.480 sum -2.094 -8.336 -1.777 8.777 Atomic orbital electron populations 1.70066 1.05930 1.27780 1.44354 1.25299 0.95829 0.98869 0.96162 0.85661 0.79195 0.80324 0.78358 1.18994 1.19998 1.20115 1.21400 0.91907 0.80650 1.53329 0.88839 1.84031 1.34018 1.11232 1.76527 1.19663 0.90467 0.87800 0.92883 1.21126 0.93130 0.99385 1.11238 1.20872 0.98811 0.92223 0.96319 1.20490 0.93591 0.97316 1.11548 1.20838 0.93734 0.96181 0.97752 1.16588 0.81558 0.91304 1.16571 1.41595 1.03972 1.68586 1.13661 1.18565 0.89374 0.90412 0.88775 1.22408 1.00744 0.98207 0.88036 1.67487 1.09778 1.11645 1.24385 1.22357 0.89722 1.01861 0.99094 1.21630 1.01105 0.95755 0.91937 1.19681 0.93006 1.14759 0.97364 1.18105 0.77248 0.75937 0.82578 1.93136 1.33802 1.96333 1.92674 1.93195 1.88393 1.39475 1.95096 1.93263 1.94865 1.74539 1.52587 0.91918 0.85022 0.87059 0.87038 0.86577 0.76178 0.82137 0.82589 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.12 13.67 55.48 0.76 -23.36 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.40 -10.48 9.49 30.87 0.29 -10.19 16 8 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 9 O -0.16 -4.12 9.25 0.00 0.00 -4.12 16 10 C 0.15 3.29 5.53 -38.92 -0.22 3.08 16 11 C -0.23 -4.54 9.16 -39.43 -0.36 -4.90 16 12 C -0.06 -1.05 10.04 -39.56 -0.40 -1.45 16 13 C -0.21 -3.26 10.04 -39.56 -0.40 -3.65 16 14 C -0.07 -1.08 9.97 -39.40 -0.39 -1.47 16 15 C 0.03 0.64 4.89 -83.54 -0.41 0.23 16 16 N -0.66 -12.44 4.97 -8.18 -0.04 -12.48 16 17 C 0.24 4.61 6.45 -83.61 -0.54 4.07 16 18 C 0.07 1.47 10.17 -17.31 -0.18 1.29 16 19 N -0.43 -8.20 10.35 -13.07 -0.14 -8.34 16 20 C 0.03 0.41 11.17 -17.53 -0.20 0.21 16 21 C -0.08 -1.29 9.50 -39.47 -0.37 -1.67 16 22 C -0.23 -4.06 5.41 -104.12 -0.56 -4.63 16 23 C 0.52 8.25 2.81 36.01 0.10 8.35 16 24 F -0.18 -2.60 16.08 2.25 0.04 -2.57 16 25 F -0.18 -2.71 16.46 2.25 0.04 -2.68 16 26 F -0.17 -3.05 16.27 2.25 0.04 -3.01 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 28 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.40 7.17 6.49 -40.82 -0.26 6.90 16 33 H 0.16 3.43 6.33 -52.49 -0.33 3.10 16 34 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 35 H 0.14 1.72 7.26 -52.48 -0.38 1.33 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -29.23 319.50 -5.61 -34.85 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -2.37 Total: 11.56 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -3.72 Total: -9.64 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.58 Total: -44.18 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.00 Total: -4.12 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.11 Total: -8.26 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.23 -5.61 -34.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596110.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.859 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds