Wall clock time and date at job start Tue Mar 31 2020 14:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48497 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.46819 * 299.99955 * 3 2 1 6 6 H 1.48494 * 109.47251 * 59.99482 * 3 2 1 7 7 C 1.38623 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00492 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99611 * 0.27529 * 7 2 1 10 10 C 1.35790 * 116.99708 * 174.65501 * 9 7 2 11 11 C 1.38713 * 120.10281 * 5.65478 * 10 9 7 12 12 C 1.38180 * 120.00521 * 179.69792 * 11 10 9 13 13 C 1.38360 * 120.21036 * 0.60646 * 12 11 10 14 14 C 1.38176 * 120.20937 * 359.67189 * 13 12 11 15 15 C 1.38784 * 119.98706 * 0.02690 * 14 13 12 16 16 N 1.39791 * 120.10235 * 180.02562 * 15 14 13 17 17 C 1.39706 * 120.00003 * 254.81665 * 16 15 14 18 18 C 1.38958 * 120.49149 * 355.00935 * 17 16 15 19 19 N 1.31782 * 120.64624 * 179.74789 * 18 17 16 20 20 C 1.31889 * 121.80431 * 0.54183 * 19 18 17 21 21 C 1.38241 * 120.93415 * 359.72348 * 20 19 18 22 22 C 1.38526 * 119.24580 * 0.02562 * 21 20 19 23 23 C 1.50706 * 120.82199 * 180.02562 * 22 21 20 24 24 F 1.39904 * 109.47146 * 359.97438 * 23 22 21 25 25 F 1.39898 * 109.46845 * 119.97704 * 23 22 21 26 26 F 1.39895 * 109.46738 * 239.97745 * 23 22 21 27 27 H 0.97003 * 119.99392 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00182 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.89939 * 180.32510 * 12 11 10 30 30 H 1.07998 * 119.89358 * 179.70086 * 13 12 11 31 31 H 1.07994 * 120.00765 * 180.02562 * 14 13 12 32 32 H 0.97004 * 119.99834 * 74.81806 * 16 15 14 33 33 H 1.07997 * 119.67658 * 0.02562 * 18 17 16 34 34 H 1.08003 * 119.53217 * 179.74598 * 20 19 18 35 35 H 1.08006 * 120.37655 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8911 2.3964 -1.2126 6 1 1.8911 2.3965 1.2124 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3349 -2.3679 -0.0046 10 6 2.0704 -3.5039 -0.1164 11 6 3.4559 -3.4399 -0.1010 12 6 4.2024 -4.5978 -0.2087 13 6 3.5724 -5.8221 -0.3447 14 6 2.1927 -5.8954 -0.3669 15 6 1.4347 -4.7385 -0.2531 16 7 0.0388 -4.8099 -0.2747 17 6 -0.6636 -4.4090 -1.4138 18 6 0.0055 -3.8416 -2.4914 19 7 -0.6534 -3.4669 -3.5694 20 6 -1.9617 -3.6027 -3.6667 21 6 -2.6977 -4.1536 -2.6343 22 6 -2.0459 -4.5663 -1.4837 23 6 -2.8132 -5.1721 -0.3367 24 9 -4.1740 -5.2177 -0.6584 25 9 -2.3469 -6.4691 -0.0971 26 9 -2.6310 -4.3917 0.8099 27 1 -0.4849 0.8401 -0.0004 28 1 3.9514 -2.4857 0.0004 29 1 5.2810 -4.5465 -0.1913 30 1 4.1608 -6.7233 -0.4334 31 1 1.7044 -6.8528 -0.4728 32 1 -0.4421 -5.1379 0.5013 33 1 1.0765 -3.7106 -2.4469 34 1 -2.4651 -3.2793 -4.5659 35 1 -3.7687 -4.2609 -2.7238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596110.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:34 Heat of formation + Delta-G solvation = -121.995666 kcal Electronic energy + Delta-G solvation = -27777.531063 eV Core-core repulsion = 23325.913763 eV Total energy + Delta-G solvation = -4451.617300 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.31974 -48.81378 -48.76785 -41.66691 -40.62754 -38.35489 -36.78784 -34.30241 -34.05259 -31.74031 -30.67724 -29.36109 -27.65928 -27.31286 -24.64356 -23.68046 -23.25225 -22.47615 -19.97762 -19.82185 -19.71364 -19.62241 -19.08806 -18.13593 -17.70011 -16.60215 -16.52352 -16.39057 -16.24271 -15.75095 -15.71254 -15.46328 -15.37669 -15.20464 -15.04298 -14.96603 -14.90701 -14.88549 -14.71812 -14.46133 -13.58211 -13.39293 -13.15820 -13.05401 -12.69717 -12.58220 -12.52916 -12.16330 -11.94381 -11.30218 -10.88120 -10.82213 -10.68456 -9.78158 -9.08831 -8.72519 -8.45936 -6.13061 -0.14712 0.20706 0.45549 0.69644 1.33456 1.41016 1.49828 1.50145 2.12226 2.18361 2.57170 2.67205 2.79770 2.85009 3.13004 3.30780 3.42864 3.59815 3.73655 3.90724 4.14660 4.20015 4.27582 4.45353 4.55886 4.64566 4.68949 4.87243 4.89981 5.06732 5.12935 5.46928 5.55015 5.58518 5.73017 5.94167 6.00480 6.21713 6.47684 6.96438 6.98510 7.76763 8.74454 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010843 B = 0.005753 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.731533 B = 4865.952793 C = 6101.329744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.016 4.016 3 Si 1.009 2.991 4 H -0.250 1.250 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.102 0.898 9 O -0.206 6.206 10 C 0.116 3.884 11 C -0.243 4.243 12 C -0.061 4.061 13 C -0.182 4.182 14 C -0.066 4.066 15 C 0.031 3.969 16 N -0.661 5.661 17 C 0.221 3.779 18 C 0.044 3.956 19 N -0.448 5.448 20 C 0.026 3.974 21 C -0.072 4.072 22 C -0.241 4.241 23 C 0.523 3.477 24 F -0.166 7.166 25 F -0.173 7.173 26 F -0.185 7.185 27 H 0.269 0.731 28 H 0.122 0.878 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.403 0.597 33 H 0.137 0.863 34 H 0.197 0.803 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -11.360 -3.203 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.214 4.214 3 Si 0.830 3.170 4 H -0.173 1.173 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.488 4.488 8 H 0.119 0.881 9 O -0.110 6.110 10 C 0.063 3.937 11 C -0.263 4.263 12 C -0.078 4.078 13 C -0.201 4.201 14 C -0.086 4.086 15 C -0.062 4.062 16 N -0.284 5.284 17 C 0.112 3.888 18 C -0.120 4.120 19 N -0.156 5.156 20 C -0.131 4.131 21 C -0.092 4.092 22 C -0.255 4.255 23 C 0.469 3.531 24 F -0.147 7.147 25 F -0.154 7.154 26 F -0.166 7.166 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.241 0.759 33 H 0.154 0.846 34 H 0.214 0.786 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.032 -10.817 -3.843 11.526 hybrid contribution -0.481 0.634 1.518 1.714 sum -1.513 -10.183 -2.325 10.554 Atomic orbital electron populations 1.70214 1.07790 1.28304 1.48246 1.26414 0.96686 1.02374 0.95975 0.84646 0.78541 0.75568 0.78257 1.17304 1.19853 1.19663 1.21806 0.92460 0.81505 1.52988 0.88111 1.84011 1.35095 1.11966 1.79973 1.20243 0.91693 0.87822 0.93959 1.21286 0.92608 1.00588 1.11775 1.21288 1.00602 0.91234 0.94726 1.21077 0.93360 0.98499 1.07142 1.21235 0.94395 0.96225 0.96702 1.16977 0.82208 0.91378 1.15627 1.41574 1.03911 1.69039 1.13828 1.18621 0.90333 0.91171 0.88674 1.22092 1.00102 1.00411 0.89385 1.67447 1.11585 1.12167 1.24383 1.23089 0.88723 1.00615 1.00626 1.22119 1.02913 0.93563 0.90592 1.19999 0.92507 1.14554 0.98487 1.17879 0.77598 0.75929 0.81697 1.93159 1.32738 1.96282 1.92501 1.93206 1.88396 1.38818 1.94993 1.93243 1.95008 1.75064 1.53296 0.92236 0.86030 0.83321 0.82582 0.83759 0.75950 0.84555 0.78635 0.80217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.88 13.67 21.61 0.30 -54.58 16 2 C -0.02 -0.87 5.49 84.82 0.47 -0.41 16 3 Si 1.01 42.66 29.55 68.60 2.03 44.69 16 4 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.41 -22.99 9.49 67.91 0.64 -22.34 16 8 H 0.10 5.18 5.21 -2.91 -0.02 5.16 16 9 O -0.21 -11.52 9.25 -22.93 -0.21 -11.74 16 10 C 0.12 5.33 5.53 22.70 0.13 5.46 16 11 C -0.24 -9.69 9.16 22.37 0.20 -9.48 16 12 C -0.06 -1.82 10.04 22.28 0.22 -1.60 16 13 C -0.18 -4.90 10.04 22.28 0.22 -4.68 16 14 C -0.07 -2.03 9.97 22.39 0.22 -1.81 16 15 C 0.03 1.23 4.89 38.32 0.19 1.42 16 16 N -0.66 -25.61 4.97 -179.80 -0.89 -26.51 16 17 C 0.22 8.73 6.45 38.31 0.25 8.98 16 18 C 0.04 1.88 10.17 84.87 0.86 2.74 16 19 N -0.45 -17.53 10.35 -195.26 -2.02 -19.55 16 20 C 0.03 0.81 11.17 84.68 0.95 1.75 16 21 C -0.07 -2.08 9.50 22.34 0.21 -1.86 16 22 C -0.24 -8.25 5.41 -19.54 -0.11 -8.36 16 23 C 0.52 16.24 2.81 71.24 0.20 16.44 16 24 F -0.17 -4.48 16.08 44.97 0.72 -3.76 16 25 F -0.17 -4.99 16.46 44.97 0.74 -4.25 16 26 F -0.18 -6.63 16.27 44.97 0.73 -5.90 16 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.12 5.00 5.64 -2.91 -0.02 4.98 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 32 H 0.40 14.72 6.49 -92.71 -0.60 14.11 16 33 H 0.14 6.28 6.33 -2.91 -0.02 6.26 16 34 H 0.20 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.18 3.70 7.26 -2.91 -0.02 3.68 16 Total: -1.00 -69.27 319.50 6.64 -62.63 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.58 Total: 32.71 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.66 Total: -13.76 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -2.62 Total: -100.64 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.21 Total: -11.74 kcal Atomic # 9 Polarization: -16.10 SS G_CDS: 2.19 Total: -13.90 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -69.27 6.64 -62.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596110.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.363 kcal (2) G-P(sol) polarization free energy of solvation -69.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds