Wall clock time and date at job start Tue Mar 31 2020 14:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48504 * 109.46881 * 270.00390 * 3 2 1 5 5 H 1.48499 * 109.47116 * 29.99752 * 3 2 1 6 6 H 1.48493 * 109.47468 * 150.00253 * 3 2 1 7 7 C 1.38632 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99944 * 359.97438 * 7 2 1 9 9 O 1.34801 * 119.99963 * 179.97438 * 7 2 1 10 10 C 1.35782 * 117.00206 * 174.94959 * 9 7 2 11 11 C 1.38728 * 120.10208 * 5.65561 * 10 9 7 12 12 C 1.38171 * 120.00779 * 179.97438 * 11 10 9 13 13 C 1.38350 * 120.21248 * 0.02562 * 12 11 10 14 14 C 1.38187 * 120.20594 * 359.97438 * 13 12 11 15 15 C 1.38771 * 119.99070 * 359.68266 * 14 13 12 16 16 N 1.39823 * 120.11029 * 180.29618 * 15 14 13 17 17 C 1.39193 * 119.99958 * 254.83761 * 16 15 14 18 18 C 1.39519 * 120.87019 * 355.22613 * 17 16 15 19 19 C 1.37869 * 119.06907 * 180.02562 * 18 17 16 20 20 N 1.32014 * 120.84390 * 0.02987 * 19 18 17 21 21 C 1.31980 * 121.91782 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.57881 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.47513 * 4.99578 * 22 21 20 24 24 F 1.39899 * 109.47591 * 125.00021 * 22 21 20 25 25 F 1.39902 * 109.46932 * 244.99600 * 22 21 20 26 26 C 1.37916 * 120.84399 * 359.71343 * 21 20 19 27 27 H 0.96994 * 120.00159 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99243 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.89639 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.90306 * 179.97438 * 13 12 11 31 31 H 1.07999 * 120.00549 * 180.02562 * 14 13 12 32 32 H 0.96998 * 120.00047 * 74.83076 * 16 15 14 33 33 H 1.07999 * 120.46597 * 0.03615 * 18 17 16 34 34 H 1.08002 * 119.58306 * 180.02562 * 19 18 17 35 35 H 1.08001 * 120.47467 * 180.29353 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.6999 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0014 9 8 3.3570 -1.2006 0.0000 10 6 3.9735 -2.4056 0.1071 11 6 3.2252 -3.5737 0.0927 12 6 3.8546 -4.7990 0.2012 13 6 5.2310 -4.8660 0.3250 14 6 5.9849 -3.7081 0.3404 15 6 5.3622 -2.4733 0.2248 16 7 6.1231 -1.3004 0.2339 17 6 6.1371 -0.4885 1.3644 18 6 5.3233 -0.7743 2.4610 19 6 5.3664 0.0552 3.5615 20 7 6.1633 1.1074 3.5851 21 6 6.9479 1.4115 2.5683 22 6 7.8373 2.6251 2.6520 23 9 7.7383 3.1888 3.9285 24 9 9.1630 2.2495 2.4097 25 9 7.4365 3.5638 1.6953 26 6 6.9689 0.6291 1.4327 27 1 -0.4850 0.8400 0.0004 28 1 2.1506 -3.5253 -0.0034 29 1 3.2703 -5.7072 0.1902 30 1 5.7177 -5.8264 0.4100 31 1 7.0591 -3.7642 0.4368 32 1 6.6414 -1.0524 -0.5477 33 1 4.6688 -1.6333 2.4481 34 1 4.7402 -0.1585 4.4151 35 1 7.6168 0.8808 0.6060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:24 Heat of formation + Delta-G solvation = -102.613464 kcal Electronic energy + Delta-G solvation = -27120.699970 eV Core-core repulsion = 22669.923145 eV Total energy + Delta-G solvation = -4450.776825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.06931 -47.61476 -47.50725 -40.42071 -39.36488 -37.02685 -35.68695 -32.56385 -31.94440 -31.22326 -29.53166 -28.26795 -26.35685 -25.44399 -23.39383 -22.72765 -21.69123 -21.08043 -18.67488 -18.48991 -18.45453 -18.07317 -17.71983 -16.64528 -16.38117 -15.54960 -15.24282 -15.14272 -14.63027 -14.50571 -14.27645 -13.99477 -13.98025 -13.96797 -13.87468 -13.72839 -13.68023 -13.66420 -13.46773 -12.65764 -12.61991 -12.37139 -11.71383 -11.50850 -11.48743 -11.21872 -10.95267 -10.76282 -10.32610 -9.66058 -9.55126 -9.24226 -9.04937 -8.54156 -7.85531 -7.52662 -6.59247 -4.26474 0.98543 1.50617 1.74376 1.99499 2.57773 3.13069 3.17442 3.31766 3.41900 3.65688 3.74655 4.09823 4.13532 4.18700 4.50546 4.54685 4.77957 4.92030 5.08093 5.17784 5.32023 5.34812 5.51646 5.62483 5.74289 5.85268 5.95617 6.12728 6.19439 6.32969 6.60563 6.75823 6.82876 7.03546 7.23516 7.44370 7.56326 7.76698 7.88479 7.94668 8.75149 9.33162 10.47298 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.005268 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.932248 B = 5313.896836 C = 6988.572542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.393 4.393 8 H 0.108 0.892 9 O -0.198 6.198 10 C 0.157 3.843 11 C -0.217 4.217 12 C -0.066 4.066 13 C -0.201 4.201 14 C -0.070 4.070 15 C 0.039 3.961 16 N -0.660 5.660 17 C 0.267 3.733 18 C -0.191 4.191 19 C 0.137 3.863 20 N -0.492 5.492 21 C 0.069 3.931 22 C 0.523 3.477 23 F -0.164 7.164 24 F -0.176 7.176 25 F -0.174 7.174 26 C -0.204 4.204 27 H 0.282 0.718 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.406 0.594 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.200 -2.324 2.745 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.102 6.102 10 C 0.102 3.898 11 C -0.237 4.237 12 C -0.085 4.085 13 C -0.221 4.221 14 C -0.089 4.089 15 C -0.054 4.054 16 N -0.283 5.283 17 C 0.154 3.846 18 C -0.216 4.216 19 C -0.018 4.018 20 N -0.205 5.205 21 C -0.071 4.071 22 C 0.468 3.532 23 F -0.146 7.146 24 F -0.157 7.157 25 F -0.155 7.155 26 C -0.230 4.230 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.243 0.757 33 H 0.162 0.838 34 H 0.182 0.818 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.969 -1.522 3.477 13.513 hybrid contribution 0.256 0.391 -1.226 1.312 sum 13.225 -1.131 2.250 13.463 Atomic orbital electron populations 1.69636 1.05568 1.28819 1.46591 1.24427 0.94958 0.98761 0.95229 0.86275 0.80685 0.81585 0.79092 1.19900 1.20568 1.18062 1.20764 0.76697 0.96677 1.52698 0.87430 1.83621 1.22661 1.25159 1.78717 1.19405 0.90872 0.86151 0.93410 1.21254 1.01365 0.91454 1.09620 1.20928 0.94334 0.96899 0.96319 1.20571 0.93904 0.97166 1.10465 1.20837 0.99037 0.90912 0.98163 1.16596 0.87237 0.85576 1.16007 1.41447 1.50870 1.22174 1.13843 1.17910 0.90675 0.88604 0.87378 1.21916 1.01641 1.03953 0.94042 1.22424 0.93813 0.88309 0.97299 1.67181 1.07031 1.18905 1.27342 1.20375 0.98418 0.95309 0.92973 1.17941 0.78324 0.82846 0.74106 1.93209 1.95912 1.86220 1.39217 1.93199 1.36912 1.91397 1.94220 1.93224 1.90528 1.67270 1.64523 1.21016 1.04381 0.97593 1.00028 0.90771 0.84453 0.86779 0.86868 0.86469 0.75737 0.83825 0.81765 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.01 13.96 55.48 0.77 -23.24 16 2 C 0.07 1.90 5.49 -17.51 -0.10 1.81 16 3 Si 0.90 21.35 28.62 -169.99 -4.86 16.48 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -10.20 9.95 30.88 0.31 -9.89 16 8 H 0.11 2.84 5.44 -52.49 -0.29 2.56 16 9 O -0.20 -4.67 8.05 0.03 0.00 -4.67 16 10 C 0.16 3.15 5.54 -38.92 -0.22 2.93 16 11 C -0.22 -4.08 9.16 -39.42 -0.36 -4.44 16 12 C -0.07 -1.02 10.04 -39.56 -0.40 -1.42 16 13 C -0.20 -2.83 10.04 -39.56 -0.40 -3.22 16 14 C -0.07 -1.01 9.97 -39.40 -0.39 -1.40 16 15 C 0.04 0.66 4.93 -83.53 -0.41 0.25 16 16 N -0.66 -10.29 5.17 -8.12 -0.04 -10.33 16 17 C 0.27 4.42 6.53 -83.58 -0.55 3.88 16 18 C -0.19 -3.26 9.04 -39.24 -0.35 -3.62 16 19 C 0.14 2.21 11.17 -17.61 -0.20 2.01 16 20 N -0.49 -8.45 9.74 -9.57 -0.09 -8.55 16 21 C 0.07 1.12 6.26 -82.65 -0.52 0.60 16 22 C 0.52 7.76 3.31 36.00 0.12 7.88 16 23 F -0.16 -2.53 16.85 2.25 0.04 -2.49 16 24 F -0.18 -2.37 17.15 2.25 0.04 -2.33 16 25 F -0.17 -2.61 17.28 2.25 0.04 -2.57 16 26 C -0.20 -3.13 9.49 -39.23 -0.37 -3.50 16 27 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.14 2.75 5.64 -52.49 -0.30 2.45 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.41 5.30 8.86 -40.82 -0.36 4.94 16 33 H 0.14 2.54 6.45 -52.49 -0.34 2.21 16 34 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -28.34 324.05 -5.59 -33.93 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -2.53 Total: 7.03 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.83 Total: -8.14 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.64 Total: -42.11 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.67 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.12 Total: -7.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.34 -5.59 -33.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.688 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds