Wall clock time and date at job start Tue Mar 31 2020 14:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48504 * 109.46881 * 270.00390 * 3 2 1 5 5 H 1.48499 * 109.47116 * 29.99752 * 3 2 1 6 6 H 1.48493 * 109.47468 * 150.00253 * 3 2 1 7 7 C 1.38632 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99944 * 359.97438 * 7 2 1 9 9 O 1.34801 * 119.99963 * 179.97438 * 7 2 1 10 10 C 1.35782 * 117.00206 * 174.94959 * 9 7 2 11 11 C 1.38728 * 120.10208 * 5.65561 * 10 9 7 12 12 C 1.38171 * 120.00779 * 179.97438 * 11 10 9 13 13 C 1.38350 * 120.21248 * 0.02562 * 12 11 10 14 14 C 1.38187 * 120.20594 * 359.97438 * 13 12 11 15 15 C 1.38771 * 119.99070 * 359.68266 * 14 13 12 16 16 N 1.39823 * 120.11029 * 180.29618 * 15 14 13 17 17 C 1.39193 * 119.99958 * 254.83761 * 16 15 14 18 18 C 1.39519 * 120.87019 * 355.22613 * 17 16 15 19 19 C 1.37869 * 119.06907 * 180.02562 * 18 17 16 20 20 N 1.32014 * 120.84390 * 0.02987 * 19 18 17 21 21 C 1.31980 * 121.91782 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.57881 * 180.02562 * 21 20 19 23 23 F 1.39897 * 109.47513 * 4.99578 * 22 21 20 24 24 F 1.39899 * 109.47591 * 125.00021 * 22 21 20 25 25 F 1.39902 * 109.46932 * 244.99600 * 22 21 20 26 26 C 1.37916 * 120.84399 * 359.71343 * 21 20 19 27 27 H 0.96994 * 120.00159 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99243 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.89639 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.90306 * 179.97438 * 13 12 11 31 31 H 1.07999 * 120.00549 * 180.02562 * 14 13 12 32 32 H 0.96998 * 120.00047 * 74.83076 * 16 15 14 33 33 H 1.07999 * 120.46597 * 0.03615 * 18 17 16 34 34 H 1.08002 * 119.58306 * 180.02562 * 19 18 17 35 35 H 1.08001 * 120.47467 * 180.29353 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.6999 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0014 9 8 3.3570 -1.2006 0.0000 10 6 3.9735 -2.4056 0.1071 11 6 3.2252 -3.5737 0.0927 12 6 3.8546 -4.7990 0.2012 13 6 5.2310 -4.8660 0.3250 14 6 5.9849 -3.7081 0.3404 15 6 5.3622 -2.4733 0.2248 16 7 6.1231 -1.3004 0.2339 17 6 6.1371 -0.4885 1.3644 18 6 5.3233 -0.7743 2.4610 19 6 5.3664 0.0552 3.5615 20 7 6.1633 1.1074 3.5851 21 6 6.9479 1.4115 2.5683 22 6 7.8373 2.6251 2.6520 23 9 7.7383 3.1888 3.9285 24 9 9.1630 2.2495 2.4097 25 9 7.4365 3.5638 1.6953 26 6 6.9689 0.6291 1.4327 27 1 -0.4850 0.8400 0.0004 28 1 2.1506 -3.5253 -0.0034 29 1 3.2703 -5.7072 0.1902 30 1 5.7177 -5.8264 0.4100 31 1 7.0591 -3.7642 0.4368 32 1 6.6414 -1.0524 -0.5477 33 1 4.6688 -1.6333 2.4481 34 1 4.7402 -0.1585 4.4151 35 1 7.6168 0.8808 0.6060 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:23 Heat of formation + Delta-G solvation = -118.562902 kcal Electronic energy + Delta-G solvation = -27121.391589 eV Core-core repulsion = 22669.923145 eV Total energy + Delta-G solvation = -4451.468444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.22754 -48.75209 -48.68399 -41.72560 -40.77324 -38.52796 -36.97159 -34.47353 -33.17545 -32.51615 -30.90840 -29.62362 -27.59414 -27.21161 -24.63523 -24.01291 -23.15278 -22.38648 -19.98976 -19.83220 -19.62448 -19.61119 -19.13698 -18.03734 -17.64383 -16.82818 -16.70337 -16.53071 -16.09066 -15.69532 -15.58026 -15.47152 -15.42606 -15.14329 -15.09749 -15.04030 -14.84650 -14.84110 -14.81679 -14.39102 -14.13600 -13.85197 -13.17317 -12.90331 -12.76721 -12.61524 -12.60085 -12.18508 -12.03878 -11.40693 -10.96758 -10.81864 -10.48348 -9.84823 -9.23302 -8.89705 -8.54628 -6.23904 -0.26298 0.22654 0.44111 0.63776 1.24648 1.26870 1.38969 1.42105 2.18037 2.19489 2.46903 2.50081 2.72841 2.95291 2.98613 3.10103 3.33509 3.62574 3.84498 3.96230 4.04375 4.13441 4.25263 4.43545 4.52749 4.60057 4.62354 4.81622 4.89671 5.01957 5.32836 5.38426 5.49872 5.65750 5.73165 5.84019 6.00475 6.28654 6.62319 6.69975 6.81846 7.56385 8.56719 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.005268 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.932248 B = 5313.896836 C = 6988.572542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.387 4.387 8 H 0.087 0.913 9 O -0.227 6.227 10 C 0.125 3.875 11 C -0.235 4.235 12 C -0.067 4.067 13 C -0.173 4.173 14 C -0.065 4.065 15 C 0.049 3.951 16 N -0.657 5.657 17 C 0.257 3.743 18 C -0.207 4.207 19 C 0.134 3.866 20 N -0.509 5.509 21 C 0.055 3.945 22 C 0.530 3.470 23 F -0.168 7.168 24 F -0.166 7.166 25 F -0.175 7.175 26 C -0.199 4.199 27 H 0.283 0.717 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.419 0.581 33 H 0.132 0.868 34 H 0.187 0.813 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.389 -3.790 2.690 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.464 4.464 8 H 0.105 0.895 9 O -0.133 6.133 10 C 0.073 3.927 11 C -0.255 4.255 12 C -0.085 4.085 13 C -0.192 4.192 14 C -0.084 4.084 15 C -0.044 4.044 16 N -0.282 5.282 17 C 0.144 3.856 18 C -0.232 4.232 19 C -0.021 4.021 20 N -0.222 5.222 21 C -0.083 4.083 22 C 0.475 3.525 23 F -0.150 7.150 24 F -0.147 7.147 25 F -0.156 7.156 26 C -0.225 4.225 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.161 0.839 30 H 0.174 0.826 31 H 0.170 0.830 32 H 0.258 0.742 33 H 0.149 0.851 34 H 0.204 0.796 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 16.217 -3.020 3.409 16.844 hybrid contribution -0.476 0.493 -1.174 1.360 sum 15.741 -2.527 2.235 16.099 Atomic orbital electron populations 1.69708 1.06614 1.29272 1.50258 1.24990 0.95530 1.01146 0.95966 0.85459 0.79068 0.78901 0.78863 1.19574 1.20255 1.18976 1.20654 0.78202 0.95839 1.51677 0.89533 1.83580 1.20848 1.26838 1.82031 1.19950 0.92381 0.85610 0.94767 1.21296 1.00466 0.92940 1.10765 1.21271 0.95564 0.96417 0.95207 1.21133 0.93089 0.98895 1.06043 1.21273 1.00896 0.89747 0.96500 1.16857 0.86082 0.87127 1.14365 1.41438 1.50641 1.21889 1.14211 1.18049 0.90909 0.89134 0.87469 1.21934 1.02109 1.04171 0.95006 1.22784 0.93706 0.87814 0.97838 1.67224 1.07632 1.19313 1.28042 1.20691 0.98560 0.95904 0.93194 1.17744 0.78501 0.82344 0.73935 1.93201 1.95968 1.86236 1.39555 1.93219 1.36062 1.91279 1.94130 1.93225 1.90612 1.67244 1.64509 1.21267 1.04115 0.96620 1.00473 0.90751 0.87007 0.83924 0.82579 0.82953 0.74194 0.85060 0.79616 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.19 13.96 21.61 0.30 -52.89 16 2 C 0.02 1.28 5.49 84.82 0.47 1.74 16 3 Si 0.95 45.48 28.62 68.60 1.96 47.45 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.39 -21.09 9.95 67.91 0.68 -20.41 16 8 H 0.09 4.92 5.44 -2.91 -0.02 4.91 16 9 O -0.23 -10.96 8.05 -22.80 -0.18 -11.15 16 10 C 0.12 4.99 5.54 22.70 0.13 5.12 16 11 C -0.23 -8.83 9.16 22.37 0.21 -8.62 16 12 C -0.07 -1.85 10.04 22.28 0.22 -1.62 16 13 C -0.17 -3.95 10.04 22.28 0.22 -3.72 16 14 C -0.06 -1.58 9.97 22.39 0.22 -1.36 16 15 C 0.05 1.55 4.93 38.31 0.19 1.74 16 16 N -0.66 -19.01 5.17 -179.61 -0.93 -19.94 16 17 C 0.26 8.10 6.53 38.58 0.25 8.35 16 18 C -0.21 -6.96 9.04 22.49 0.20 -6.75 16 19 C 0.13 4.22 11.17 84.58 0.94 5.17 16 20 N -0.51 -16.95 9.74 -184.20 -1.79 -18.74 16 21 C 0.06 1.71 6.26 42.46 0.27 1.98 16 22 C 0.53 14.77 3.31 71.24 0.24 15.01 16 23 F -0.17 -4.95 16.85 44.97 0.76 -4.19 16 24 F -0.17 -4.08 17.15 44.97 0.77 -3.31 16 25 F -0.17 -4.92 17.28 44.97 0.78 -4.15 16 26 C -0.20 -5.68 9.49 22.49 0.21 -5.47 16 27 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.11 4.75 5.64 -2.91 -0.02 4.73 16 29 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.42 9.78 8.86 -92.71 -0.82 8.96 16 33 H 0.13 4.68 6.45 -2.91 -0.02 4.66 16 34 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 35 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -63.98 324.05 6.47 -57.51 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.36 Total: 18.25 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 4.45 Total: -8.85 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -2.42 Total: -91.57 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.18 Total: -11.15 kcal Atomic # 9 Polarization: -13.95 SS G_CDS: 2.31 Total: -11.64 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.96 Total: 47.45 kcal Total: -63.98 6.47 -57.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.053 kcal (2) G-P(sol) polarization free energy of solvation -63.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds