Wall clock time and date at job start Tue Mar 31 2020 14:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 119.99723 * 2 1 4 4 H 1.48502 * 109.46904 * 269.71472 * 3 2 1 5 5 H 1.48496 * 109.47660 * 29.71721 * 3 2 1 6 6 H 1.48508 * 109.47224 * 149.72248 * 3 2 1 7 7 C 1.38624 * 119.99997 * 179.71719 * 2 1 3 8 8 H 1.07999 * 120.00479 * 0.27932 * 7 2 1 9 9 O 1.34803 * 120.00130 * 180.28227 * 7 2 1 10 10 C 1.35789 * 117.00175 * 174.96915 * 9 7 2 11 11 C 1.38724 * 120.09989 * 5.27028 * 10 9 7 12 12 C 1.38180 * 119.99911 * 179.76568 * 11 10 9 13 13 C 1.38349 * 120.21146 * 0.51017 * 12 11 10 14 14 C 1.38179 * 120.20484 * 359.74199 * 13 12 11 15 15 C 1.38761 * 119.99562 * 0.02562 * 14 13 12 16 16 N 1.39846 * 120.10469 * 180.02562 * 15 14 13 17 17 C 1.39058 * 119.99952 * 335.22476 * 16 15 14 18 18 N 1.32442 * 119.70328 * 353.72636 * 17 16 15 19 19 C 1.31932 * 121.61657 * 179.71047 * 18 17 16 20 20 C 1.38084 * 120.85704 * 0.56087 * 19 18 17 21 21 C 1.38836 * 119.32835 * 359.72845 * 20 19 18 22 22 C 1.38343 * 118.50872 * 359.97438 * 21 20 19 23 23 C 1.50701 * 120.45253 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.47156 * 359.97438 * 23 22 21 25 25 F 1.39903 * 109.46996 * 119.97919 * 23 22 21 26 26 F 1.39893 * 109.47152 * 239.98158 * 23 22 21 27 27 H 0.97006 * 120.00409 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99976 * 0.02562 * 11 10 9 29 29 H 1.07995 * 119.88839 * 180.27912 * 12 11 10 30 30 H 1.07997 * 119.89520 * 179.76408 * 13 12 11 31 31 H 1.08006 * 120.00338 * 179.97438 * 14 13 12 32 32 H 0.97000 * 120.00181 * 155.23403 * 16 15 14 33 33 H 1.08003 * 119.56980 * 180.28205 * 19 18 17 34 34 H 1.08007 * 120.33351 * 179.70181 * 20 19 18 35 35 H 1.08006 * 120.74737 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.5031 2.0429 -1.4001 5 1 1.4442 2.6544 0.6940 6 1 3.5443 1.4420 0.7059 7 6 2.0088 -1.2005 0.0059 8 1 1.4689 -2.1359 0.0060 9 8 3.3569 -1.2005 0.0117 10 6 3.9729 -2.4055 0.1234 11 6 3.2240 -3.5731 0.1152 12 6 3.8534 -4.7984 0.2241 13 6 5.2293 -4.8653 0.3522 14 6 5.9832 -3.7074 0.3666 15 6 5.3605 -2.4726 0.2529 16 7 6.1213 -1.2993 0.2667 17 6 7.3666 -1.2854 0.8854 18 7 7.7729 -2.3462 1.5664 19 6 8.9492 -2.3760 2.1632 20 6 9.7993 -1.2893 2.1076 21 6 9.4085 -0.1552 1.4085 22 6 8.1722 -0.1556 0.7878 23 6 7.7043 1.0518 0.0168 24 9 8.6859 2.0473 0.0685 25 9 7.4732 0.6934 -1.3157 26 9 6.5195 1.5356 0.5818 27 1 -0.4851 0.8401 -0.0004 28 1 2.1493 -3.5247 0.0195 29 1 3.2690 -5.7065 0.2130 30 1 5.7156 -5.8255 0.4408 31 1 7.0572 -3.7634 0.4671 32 1 5.7804 -0.4952 -0.1552 33 1 9.2491 -3.2602 2.7060 34 1 10.7583 -1.3211 2.6034 35 1 10.0552 0.7079 1.3506 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:56 Heat of formation + Delta-G solvation = -93.881148 kcal Electronic energy + Delta-G solvation = -27619.688199 eV Core-core repulsion = 23169.290036 eV Total energy + Delta-G solvation = -4450.398163 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.18917 -47.72516 -47.59861 -40.69929 -39.25592 -36.84194 -35.37361 -33.20672 -32.43237 -30.95499 -29.37849 -28.22458 -26.31516 -25.31935 -23.56020 -22.79630 -21.48788 -21.15563 -18.80866 -18.47194 -18.45927 -18.00682 -17.66587 -17.48031 -16.38528 -15.56505 -15.18730 -14.97753 -14.64033 -14.45328 -14.38614 -14.17269 -14.07210 -14.02694 -13.81806 -13.77432 -13.73745 -13.49631 -13.22839 -12.86735 -12.41918 -12.22223 -11.92935 -11.88317 -11.16729 -11.06815 -10.80517 -10.73296 -10.30590 -10.16705 -9.61892 -9.32380 -8.95281 -8.83203 -7.74596 -6.98946 -6.45464 -4.11382 0.73076 1.12723 2.16544 2.23464 2.63469 3.08720 3.19916 3.23307 3.37008 3.54441 3.67841 3.92453 4.19391 4.39429 4.40034 4.49258 4.64033 4.70152 4.90077 5.01402 5.06605 5.26793 5.58783 5.64830 5.72877 5.88087 5.93694 6.15094 6.18449 6.43210 6.66136 6.75412 6.97301 7.26158 7.30391 7.39062 7.56976 7.76853 7.97017 8.06169 8.89109 9.47199 10.61914 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.006191 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.423438 B = 4521.513389 C = 6580.656230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.386 4.386 8 H 0.108 0.892 9 O -0.221 6.221 10 C 0.137 3.863 11 C -0.206 4.206 12 C -0.088 4.088 13 C -0.186 4.186 14 C -0.081 4.081 15 C 0.074 3.926 16 N -0.630 5.630 17 C 0.448 3.552 18 N -0.522 5.522 19 C 0.180 3.820 20 C -0.247 4.247 21 C 0.018 3.982 22 C -0.313 4.313 23 C 0.513 3.487 24 F -0.178 7.178 25 F -0.176 7.176 26 F -0.172 7.172 27 H 0.280 0.720 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.420 0.580 33 H 0.165 0.835 34 H 0.141 0.859 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.243 -2.265 2.687 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.461 4.461 8 H 0.126 0.874 9 O -0.127 6.127 10 C 0.084 3.916 11 C -0.225 4.225 12 C -0.107 4.107 13 C -0.206 4.206 14 C -0.102 4.102 15 C -0.021 4.021 16 N -0.250 5.250 17 C 0.210 3.790 18 N -0.239 5.239 19 C 0.019 3.981 20 C -0.270 4.270 21 C -0.008 4.008 22 C -0.323 4.323 23 C 0.458 3.542 24 F -0.159 7.159 25 F -0.157 7.157 26 F -0.153 7.153 27 H 0.090 0.910 28 H 0.155 0.845 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.160 0.840 32 H 0.259 0.741 33 H 0.182 0.818 34 H 0.158 0.842 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.402 -2.668 2.661 18.784 hybrid contribution 0.329 2.016 -0.304 2.066 sum 18.731 -0.651 2.357 18.890 Atomic orbital electron populations 1.69641 1.05465 1.28495 1.47893 1.24413 0.94996 0.98634 0.95708 0.86335 0.80674 0.81804 0.79155 1.19733 1.20597 1.18051 1.20710 0.76505 0.96676 1.52251 0.87440 1.83488 1.23017 1.25275 1.80882 1.18799 0.89452 0.86565 0.96781 1.21087 1.01012 0.91197 1.09250 1.20847 0.94453 0.96697 0.98699 1.20577 0.93737 0.97142 1.09116 1.20963 1.00508 0.89528 0.99179 1.16934 0.87043 0.85848 1.12258 1.42156 1.14388 1.13633 1.54808 1.17959 0.85592 0.88294 0.87125 1.67795 1.17698 1.25405 1.12996 1.22849 0.87374 0.97419 0.90434 1.21778 1.03292 0.94872 1.07024 1.21147 0.91991 0.98234 0.89402 1.20162 1.00927 0.96116 1.15068 1.18117 0.75302 0.83023 0.77764 1.93138 1.62444 1.64005 1.96323 1.93235 1.94458 1.91685 1.36327 1.93284 1.48062 1.89258 1.84744 0.91001 0.84507 0.87059 0.87039 0.84013 0.74118 0.81759 0.84163 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.96 55.48 0.77 -24.47 16 2 C 0.07 1.85 5.49 -17.52 -0.10 1.75 16 3 Si 0.90 21.78 28.62 -169.99 -4.86 16.92 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.39 -10.74 9.95 30.87 0.31 -10.44 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 9 O -0.22 -5.73 8.00 0.00 0.00 -5.73 16 10 C 0.14 3.16 6.67 -38.92 -0.26 2.90 16 11 C -0.21 -4.38 9.16 -39.42 -0.36 -4.74 16 12 C -0.09 -1.57 10.04 -39.56 -0.40 -1.97 16 13 C -0.19 -3.11 10.04 -39.56 -0.40 -3.51 16 14 C -0.08 -1.45 8.65 -39.41 -0.34 -1.79 16 15 C 0.07 1.51 6.46 -83.53 -0.54 0.97 16 16 N -0.63 -12.08 5.17 -9.85 -0.05 -12.13 16 17 C 0.45 7.35 7.18 -154.94 -1.11 6.23 16 18 N -0.52 -7.70 6.58 -12.41 -0.08 -7.78 16 19 C 0.18 1.88 11.17 -17.57 -0.20 1.68 16 20 C -0.25 -2.23 10.10 -39.42 -0.40 -2.62 16 21 C 0.02 0.19 9.53 -39.32 -0.37 -0.18 16 22 C -0.31 -4.46 5.40 -104.26 -0.56 -5.03 16 23 C 0.51 7.70 2.80 36.01 0.10 7.80 16 24 F -0.18 -2.33 16.05 2.25 0.04 -2.29 16 25 F -0.18 -2.77 16.39 2.25 0.04 -2.73 16 26 F -0.17 -3.01 16.15 2.25 0.04 -2.97 16 27 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.14 3.03 5.64 -52.49 -0.30 2.73 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.14 2.31 5.59 -52.48 -0.29 2.02 16 32 H 0.42 8.38 5.79 -40.82 -0.24 8.15 16 33 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 34 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 35 H 0.15 1.19 7.25 -52.48 -0.38 0.81 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -30.22 315.13 -6.31 -36.53 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -2.32 Total: 8.85 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -4.63 Total: -8.94 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.64 Total: -44.38 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: 0.00 Total: -5.73 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.22 -6.31 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.355 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds