Wall clock time and date at job start Tue Mar 31 2020 14:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 119.99723 * 2 1 4 4 H 1.48502 * 109.46904 * 269.71472 * 3 2 1 5 5 H 1.48496 * 109.47660 * 29.71721 * 3 2 1 6 6 H 1.48508 * 109.47224 * 149.72248 * 3 2 1 7 7 C 1.38624 * 119.99997 * 179.71719 * 2 1 3 8 8 H 1.07999 * 120.00479 * 0.27932 * 7 2 1 9 9 O 1.34803 * 120.00130 * 180.28227 * 7 2 1 10 10 C 1.35789 * 117.00175 * 174.96915 * 9 7 2 11 11 C 1.38724 * 120.09989 * 5.27028 * 10 9 7 12 12 C 1.38180 * 119.99911 * 179.76568 * 11 10 9 13 13 C 1.38349 * 120.21146 * 0.51017 * 12 11 10 14 14 C 1.38179 * 120.20484 * 359.74199 * 13 12 11 15 15 C 1.38761 * 119.99562 * 0.02562 * 14 13 12 16 16 N 1.39846 * 120.10469 * 180.02562 * 15 14 13 17 17 C 1.39058 * 119.99952 * 335.22476 * 16 15 14 18 18 N 1.32442 * 119.70328 * 353.72636 * 17 16 15 19 19 C 1.31932 * 121.61657 * 179.71047 * 18 17 16 20 20 C 1.38084 * 120.85704 * 0.56087 * 19 18 17 21 21 C 1.38836 * 119.32835 * 359.72845 * 20 19 18 22 22 C 1.38343 * 118.50872 * 359.97438 * 21 20 19 23 23 C 1.50701 * 120.45253 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.47156 * 359.97438 * 23 22 21 25 25 F 1.39903 * 109.46996 * 119.97919 * 23 22 21 26 26 F 1.39893 * 109.47152 * 239.98158 * 23 22 21 27 27 H 0.97006 * 120.00409 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99976 * 0.02562 * 11 10 9 29 29 H 1.07995 * 119.88839 * 180.27912 * 12 11 10 30 30 H 1.07997 * 119.89520 * 179.76408 * 13 12 11 31 31 H 1.08006 * 120.00338 * 179.97438 * 14 13 12 32 32 H 0.97000 * 120.00181 * 155.23403 * 16 15 14 33 33 H 1.08003 * 119.56980 * 180.28205 * 19 18 17 34 34 H 1.08007 * 120.33351 * 179.70181 * 20 19 18 35 35 H 1.08006 * 120.74737 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.5031 2.0429 -1.4001 5 1 1.4442 2.6544 0.6940 6 1 3.5443 1.4420 0.7059 7 6 2.0088 -1.2005 0.0059 8 1 1.4689 -2.1359 0.0060 9 8 3.3569 -1.2005 0.0117 10 6 3.9729 -2.4055 0.1234 11 6 3.2240 -3.5731 0.1152 12 6 3.8534 -4.7984 0.2241 13 6 5.2293 -4.8653 0.3522 14 6 5.9832 -3.7074 0.3666 15 6 5.3605 -2.4726 0.2529 16 7 6.1213 -1.2993 0.2667 17 6 7.3666 -1.2854 0.8854 18 7 7.7729 -2.3462 1.5664 19 6 8.9492 -2.3760 2.1632 20 6 9.7993 -1.2893 2.1076 21 6 9.4085 -0.1552 1.4085 22 6 8.1722 -0.1556 0.7878 23 6 7.7043 1.0518 0.0168 24 9 8.6859 2.0473 0.0685 25 9 7.4732 0.6934 -1.3157 26 9 6.5195 1.5356 0.5818 27 1 -0.4851 0.8401 -0.0004 28 1 2.1493 -3.5247 0.0195 29 1 3.2690 -5.7065 0.2130 30 1 5.7156 -5.8255 0.4408 31 1 7.0572 -3.7634 0.4671 32 1 5.7804 -0.4952 -0.1552 33 1 9.2491 -3.2602 2.7060 34 1 10.7583 -1.3211 2.6034 35 1 10.0552 0.7079 1.3506 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:55 Heat of formation + Delta-G solvation = -110.770884 kcal Electronic energy + Delta-G solvation = -27620.420593 eV Core-core repulsion = 23169.290036 eV Total energy + Delta-G solvation = -4451.130557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.36984 -48.86953 -48.83464 -41.83384 -40.76768 -38.44786 -36.66354 -34.47916 -34.19788 -32.08475 -30.92381 -29.62256 -27.38394 -27.23701 -24.69989 -23.95901 -22.92109 -22.59036 -20.03918 -19.93401 -19.67338 -19.46001 -19.23532 -18.62735 -17.81204 -16.79641 -16.45604 -16.31511 -16.10735 -15.77063 -15.66260 -15.52950 -15.44305 -15.26439 -15.20771 -15.00051 -14.98051 -14.93059 -14.56941 -14.29387 -14.05808 -13.74088 -13.40607 -12.92039 -12.79626 -12.68993 -12.35668 -12.14817 -12.05939 -11.47790 -11.15062 -10.95687 -10.44392 -10.05257 -9.29281 -8.53598 -8.44601 -6.22690 -0.23378 0.13596 0.65327 0.78654 1.23501 1.26456 1.42705 1.51086 1.85434 2.20692 2.56703 2.58067 2.77552 2.81454 2.95107 3.17080 3.25784 3.44380 3.71371 3.98856 4.11603 4.19184 4.27990 4.47135 4.53097 4.68359 4.78382 4.86125 5.08100 5.15197 5.24031 5.49790 5.52082 5.62437 5.75764 5.88092 5.97836 6.09363 6.31583 6.81403 6.94140 7.54596 8.58137 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.006191 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.423438 B = 4521.513389 C = 6580.656230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.390 4.390 8 H 0.086 0.914 9 O -0.247 6.247 10 C 0.089 3.911 11 C -0.218 4.218 12 C -0.093 4.093 13 C -0.157 4.157 14 C -0.085 4.085 15 C 0.082 3.918 16 N -0.653 5.653 17 C 0.421 3.579 18 N -0.545 5.545 19 C 0.174 3.826 20 C -0.215 4.215 21 C 0.015 3.985 22 C -0.323 4.323 23 C 0.510 3.490 24 F -0.166 7.166 25 F -0.185 7.185 26 F -0.192 7.192 27 H 0.284 0.716 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.409 0.591 33 H 0.207 0.793 34 H 0.188 0.812 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.925 -3.714 4.068 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.466 4.466 8 H 0.103 0.897 9 O -0.156 6.156 10 C 0.039 3.961 11 C -0.238 4.238 12 C -0.112 4.112 13 C -0.176 4.176 14 C -0.105 4.105 15 C -0.013 4.013 16 N -0.275 5.275 17 C 0.187 3.813 18 N -0.262 5.262 19 C 0.015 3.985 20 C -0.237 4.237 21 C -0.010 4.010 22 C -0.331 4.331 23 C 0.455 3.545 24 F -0.147 7.147 25 F -0.166 7.166 26 F -0.173 7.173 27 H 0.093 0.907 28 H 0.132 0.868 29 H 0.162 0.838 30 H 0.175 0.825 31 H 0.181 0.819 32 H 0.246 0.754 33 H 0.223 0.777 34 H 0.205 0.795 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 23.176 -4.152 4.071 23.895 hybrid contribution -0.705 2.210 -0.623 2.402 sum 22.471 -1.942 3.448 22.817 Atomic orbital electron populations 1.69715 1.06551 1.29340 1.50551 1.25084 0.95747 1.01439 0.95972 0.85491 0.79107 0.78596 0.79346 1.19069 1.19135 1.18942 1.20661 0.77884 0.96098 1.51972 0.89673 1.83441 1.21443 1.26907 1.83762 1.19338 0.90958 0.86257 0.99578 1.21160 1.00161 0.92610 1.09894 1.21182 0.95557 0.96261 0.98151 1.21143 0.93052 0.98667 1.04722 1.21346 1.01717 0.88750 0.98721 1.17257 0.86207 0.87565 1.10255 1.42166 1.15784 1.12796 1.56720 1.18143 0.84977 0.89840 0.88354 1.67715 1.19791 1.25187 1.13484 1.23654 0.85939 0.99403 0.89469 1.22340 1.04233 0.92927 1.04170 1.21612 0.90748 1.00031 0.88624 1.20269 1.02152 0.94949 1.15768 1.18329 0.74899 0.83767 0.77516 1.93151 1.61667 1.63634 1.96251 1.93212 1.94538 1.91794 1.37076 1.93242 1.49494 1.89586 1.85021 0.90658 0.86792 0.83810 0.82467 0.81865 0.75386 0.77687 0.79487 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.87 13.96 21.61 0.30 -55.56 16 2 C 0.02 0.95 5.49 84.82 0.47 1.42 16 3 Si 0.95 47.21 28.62 68.60 1.96 49.17 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.26 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.39 -23.29 9.95 67.91 0.68 -22.61 16 8 H 0.09 5.28 5.44 -2.91 -0.02 5.27 16 9 O -0.25 -13.69 8.00 -22.90 -0.18 -13.88 16 10 C 0.09 4.30 6.67 22.70 0.15 4.45 16 11 C -0.22 -9.69 9.16 22.37 0.21 -9.49 16 12 C -0.09 -3.16 10.04 22.28 0.22 -2.94 16 13 C -0.16 -4.70 10.04 22.28 0.22 -4.48 16 14 C -0.08 -2.85 8.65 22.38 0.19 -2.66 16 15 C 0.08 3.41 6.46 38.30 0.25 3.65 16 16 N -0.65 -25.58 5.17 -185.08 -0.96 -26.53 16 17 C 0.42 13.36 7.18 133.02 0.96 14.32 16 18 N -0.54 -14.47 6.58 -193.19 -1.27 -15.74 16 19 C 0.17 2.76 11.17 84.64 0.95 3.71 16 20 C -0.22 -2.62 10.10 22.38 0.23 -2.40 16 21 C 0.02 0.27 9.53 22.44 0.21 0.48 16 22 C -0.32 -8.66 5.40 -19.63 -0.11 -8.76 16 23 C 0.51 15.15 2.80 71.24 0.20 15.35 16 24 F -0.17 -4.10 16.05 44.97 0.72 -3.38 16 25 F -0.18 -5.93 16.39 44.97 0.74 -5.20 16 26 F -0.19 -6.89 16.15 44.97 0.73 -6.16 16 27 H 0.28 15.88 8.31 -92.70 -0.77 15.11 16 28 H 0.11 5.49 5.64 -2.91 -0.02 5.47 16 29 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 30 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.16 4.79 5.59 -2.91 -0.02 4.77 16 32 H 0.41 17.23 5.79 -92.71 -0.54 16.69 16 33 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.19 0.64 8.06 -2.91 -0.02 0.61 16 35 H 0.17 2.01 7.25 -2.91 -0.02 1.99 16 Total: -1.00 -72.51 315.13 7.51 -65.00 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.65 Total: 22.24 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.82 Total: -9.96 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -1.93 Total: -97.84 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.18 Total: -13.88 kcal Atomic # 9 Polarization: -16.92 SS G_CDS: 2.18 Total: -14.74 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.96 Total: 49.17 kcal Total: -72.51 7.51 -65.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.773 kcal (2) G-P(sol) polarization free energy of solvation -72.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds