Wall clock time and date at job start Tue Mar 31 2020 14:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48495 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47156 * 300.00215 * 3 2 1 6 6 H 1.48495 * 109.46873 * 60.00282 * 3 2 1 7 7 C 1.38625 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99449 * 180.02562 * 7 2 1 9 9 O 1.34799 * 120.00426 * 359.97438 * 7 2 1 10 10 C 1.35791 * 117.00170 * 184.73337 * 9 7 2 11 11 C 1.38718 * 120.10198 * 5.56889 * 10 9 7 12 12 C 1.38167 * 120.00736 * 179.97438 * 11 10 9 13 13 C 1.38355 * 120.21227 * 0.02562 * 12 11 10 14 14 C 1.38176 * 120.20928 * 359.97438 * 13 12 11 15 15 C 1.38777 * 119.98937 * 0.02562 * 14 13 12 16 16 N 1.39789 * 120.10955 * 179.97438 * 15 14 13 17 17 C 1.39710 * 119.99892 * 253.56162 * 16 15 14 18 18 C 1.39339 * 120.49224 * 179.25852 * 17 16 15 19 19 C 1.38490 * 118.35300 * 179.97438 * 18 17 16 20 20 C 1.38277 * 119.24314 * 0.02562 * 19 18 17 21 21 C 1.50708 * 119.53512 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.47052 * 89.99536 * 21 20 19 23 23 F 1.39904 * 109.47118 * 209.99897 * 21 20 19 24 24 F 1.39894 * 109.46807 * 329.99578 * 21 20 19 25 25 N 1.31864 * 120.93847 * 359.97438 * 20 19 18 26 26 C 1.31815 * 121.79640 * 359.72176 * 25 20 19 27 27 H 0.97002 * 119.99921 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99816 * 0.02739 * 11 10 9 29 29 H 1.08001 * 119.89922 * 180.28022 * 12 11 10 30 30 H 1.08001 * 119.89681 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.00989 * 180.02562 * 14 13 12 32 32 H 0.96997 * 120.00442 * 73.55966 * 16 15 14 33 33 H 1.07998 * 120.82419 * 0.02562 * 18 17 16 34 34 H 1.07995 * 120.37855 * 179.97438 * 19 18 17 35 35 H 1.08006 * 119.67321 * 180.26293 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0709 -3.5048 0.0988 11 6 3.4399 -3.4310 0.3102 12 6 4.1868 -4.5889 0.4115 13 6 3.5740 -5.8245 0.3021 14 6 2.2110 -5.9084 0.0915 15 6 1.4525 -4.7508 -0.0116 16 7 0.0735 -4.8326 -0.2252 17 6 -0.4592 -4.5180 -1.4779 18 6 -1.8306 -4.6108 -1.7066 19 6 -2.3109 -4.2878 -2.9647 20 6 -1.4216 -3.8874 -3.9450 21 6 -1.9372 -3.5337 -5.3163 22 9 -2.2439 -2.1696 -5.3616 23 9 -0.9573 -3.8235 -6.2719 24 9 -3.0888 -4.2800 -5.5882 25 7 -0.1289 -3.8097 -3.6968 26 6 0.3697 -4.1022 -2.5121 27 1 -0.4850 0.8401 0.0004 28 1 3.9218 -2.4683 0.3966 29 1 5.2518 -4.5295 0.5806 30 1 4.1628 -6.7264 0.3816 31 1 1.7359 -6.8745 0.0070 32 1 -0.5136 -5.1079 0.4961 33 1 -2.5024 -4.9261 -0.9220 34 1 -3.3678 -4.3486 -3.1780 35 1 1.4339 -4.0226 -2.3454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:04 Heat of formation + Delta-G solvation = -105.304171 kcal Electronic energy + Delta-G solvation = -26954.017478 eV Core-core repulsion = 22503.123975 eV Total energy + Delta-G solvation = -4450.893502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.84169 -47.40596 -47.26825 -40.25925 -39.15814 -36.78468 -35.43805 -32.43543 -32.07499 -30.95138 -29.34049 -28.19645 -25.65972 -25.36916 -23.64276 -22.21911 -21.78575 -21.05421 -18.36641 -18.27091 -18.19605 -18.14097 -17.50251 -17.20512 -16.14994 -15.17548 -14.92691 -14.75486 -14.61066 -14.31523 -14.13756 -14.02704 -13.79601 -13.76529 -13.61239 -13.53746 -13.46703 -13.42454 -13.15159 -12.85087 -12.62135 -11.83097 -11.62042 -11.52113 -11.28642 -11.12603 -10.99120 -10.61388 -10.44962 -9.63183 -9.43312 -9.37634 -8.97854 -8.39522 -7.59909 -7.25618 -6.58522 -4.17188 1.29778 1.54378 1.85330 2.14227 2.86546 3.05909 3.07584 3.13197 3.59257 3.85467 3.93164 3.97078 4.29887 4.30686 4.77211 4.92787 4.97848 4.99811 5.11955 5.28779 5.37085 5.46884 5.60425 5.75133 5.88600 6.02410 6.09941 6.23844 6.39174 6.47241 6.69928 6.86401 6.91477 7.12746 7.18172 7.39487 7.66532 7.81171 7.94343 8.17097 8.86523 9.50032 10.57682 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.005055 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.807471 B = 5538.128291 C = 7351.457645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.157 6.157 10 C 0.148 3.852 11 C -0.228 4.228 12 C -0.065 4.065 13 C -0.210 4.210 14 C -0.068 4.068 15 C 0.033 3.967 16 N -0.655 5.655 17 C 0.220 3.780 18 C -0.162 4.162 19 C -0.075 4.075 20 C -0.046 4.046 21 C 0.530 3.470 22 F -0.176 7.176 23 F -0.171 7.171 24 F -0.181 7.181 25 N -0.406 5.406 26 C 0.065 3.935 27 H 0.271 0.729 28 H 0.132 0.868 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.404 0.596 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -9.478 -2.444 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.059 6.059 10 C 0.091 3.909 11 C -0.248 4.248 12 C -0.083 4.083 13 C -0.230 4.230 14 C -0.087 4.087 15 C -0.061 4.061 16 N -0.276 5.276 17 C 0.111 3.889 18 C -0.192 4.192 19 C -0.095 4.095 20 C -0.185 4.185 21 C 0.475 3.525 22 F -0.157 7.157 23 F -0.153 7.153 24 F -0.162 7.162 25 N -0.113 5.113 26 C -0.102 4.102 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.241 0.759 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.479 -8.942 -3.158 9.597 hybrid contribution -0.320 0.699 0.914 1.194 sum -1.800 -8.243 -2.244 8.730 Atomic orbital electron populations 1.70043 1.05967 1.27859 1.44547 1.25293 0.95848 0.98909 0.96125 0.85658 0.79224 0.80274 0.78403 1.18957 1.19944 1.20072 1.21391 0.91903 0.80651 1.53180 0.88864 1.84020 1.33865 1.11196 1.76797 1.19668 0.90657 0.87617 0.92985 1.21139 0.93628 0.99338 1.10732 1.20871 0.98760 0.92220 0.96466 1.20494 0.94090 0.97093 1.11307 1.20816 0.93646 0.96055 0.98214 1.16592 0.82981 0.90619 1.15875 1.41501 1.05105 1.71748 1.09221 1.19041 0.92807 0.90164 0.86870 1.20874 0.93317 1.07216 0.97760 1.21372 1.00272 0.95536 0.92361 1.20355 0.91977 1.12324 0.93819 1.17842 0.74843 0.74442 0.85412 1.93221 1.93147 1.32517 1.96832 1.93187 1.62397 1.93109 1.66577 1.93148 1.51493 1.76901 1.94688 1.66928 1.12701 1.09290 1.22429 1.22228 1.00385 1.00887 0.86650 0.91881 0.85059 0.87080 0.87083 0.86631 0.75890 0.84215 0.84260 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.02 13.67 55.48 0.76 -23.27 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.40 -10.38 9.45 30.88 0.29 -10.09 16 8 H 0.09 2.27 5.28 -52.48 -0.28 2.00 16 9 O -0.16 -4.07 9.27 0.01 0.00 -4.06 16 10 C 0.15 3.18 5.63 -38.92 -0.22 2.96 16 11 C -0.23 -4.46 9.13 -39.43 -0.36 -4.82 16 12 C -0.06 -1.05 10.04 -39.56 -0.40 -1.45 16 13 C -0.21 -3.16 10.04 -39.56 -0.40 -3.56 16 14 C -0.07 -1.05 9.96 -39.41 -0.39 -1.45 16 15 C 0.03 0.60 4.84 -83.55 -0.40 0.19 16 16 N -0.65 -10.99 5.19 -8.18 -0.04 -11.03 16 17 C 0.22 3.92 6.48 -83.61 -0.54 3.38 16 18 C -0.16 -2.48 10.05 -39.08 -0.39 -2.87 16 19 C -0.07 -1.15 9.42 -39.47 -0.37 -1.52 16 20 C -0.05 -0.82 6.30 -82.56 -0.52 -1.34 16 21 C 0.53 8.73 3.43 36.01 0.12 8.86 16 22 F -0.18 -3.06 17.30 2.25 0.04 -3.02 16 23 F -0.17 -2.92 17.03 2.25 0.04 -2.88 16 24 F -0.18 -2.59 16.43 2.25 0.04 -2.55 16 25 N -0.41 -8.17 9.95 -9.29 -0.09 -8.27 16 26 C 0.06 1.29 10.21 -17.31 -0.18 1.12 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.13 2.60 5.70 -52.48 -0.30 2.31 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.40 5.72 8.85 -40.82 -0.36 5.36 16 33 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.14 1.69 7.59 -52.49 -0.40 1.30 16 35 H 0.16 3.34 6.43 -52.48 -0.34 3.00 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -29.63 324.60 -5.75 -35.37 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -2.50 Total: 9.31 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.85 Total: -9.51 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.62 Total: -42.56 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: 0.00 Total: -4.06 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.11 Total: -8.45 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.63 -5.75 -35.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.929 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds