Wall clock time and date at job start Tue Mar 31 2020 14:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48495 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47156 * 300.00215 * 3 2 1 6 6 H 1.48495 * 109.46873 * 60.00282 * 3 2 1 7 7 C 1.38625 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99449 * 180.02562 * 7 2 1 9 9 O 1.34799 * 120.00426 * 359.97438 * 7 2 1 10 10 C 1.35791 * 117.00170 * 184.73337 * 9 7 2 11 11 C 1.38718 * 120.10198 * 5.56889 * 10 9 7 12 12 C 1.38167 * 120.00736 * 179.97438 * 11 10 9 13 13 C 1.38355 * 120.21227 * 0.02562 * 12 11 10 14 14 C 1.38176 * 120.20928 * 359.97438 * 13 12 11 15 15 C 1.38777 * 119.98937 * 0.02562 * 14 13 12 16 16 N 1.39789 * 120.10955 * 179.97438 * 15 14 13 17 17 C 1.39710 * 119.99892 * 253.56162 * 16 15 14 18 18 C 1.39339 * 120.49224 * 179.25852 * 17 16 15 19 19 C 1.38490 * 118.35300 * 179.97438 * 18 17 16 20 20 C 1.38277 * 119.24314 * 0.02562 * 19 18 17 21 21 C 1.50708 * 119.53512 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.47052 * 89.99536 * 21 20 19 23 23 F 1.39904 * 109.47118 * 209.99897 * 21 20 19 24 24 F 1.39894 * 109.46807 * 329.99578 * 21 20 19 25 25 N 1.31864 * 120.93847 * 359.97438 * 20 19 18 26 26 C 1.31815 * 121.79640 * 359.72176 * 25 20 19 27 27 H 0.97002 * 119.99921 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.99816 * 0.02739 * 11 10 9 29 29 H 1.08001 * 119.89922 * 180.28022 * 12 11 10 30 30 H 1.08001 * 119.89681 * 179.97438 * 13 12 11 31 31 H 1.07997 * 120.00989 * 180.02562 * 14 13 12 32 32 H 0.96997 * 120.00442 * 73.55966 * 16 15 14 33 33 H 1.07998 * 120.82419 * 0.02562 * 18 17 16 34 34 H 1.07995 * 120.37855 * 179.97438 * 19 18 17 35 35 H 1.08006 * 119.67321 * 180.26293 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0709 -3.5048 0.0988 11 6 3.4399 -3.4310 0.3102 12 6 4.1868 -4.5889 0.4115 13 6 3.5740 -5.8245 0.3021 14 6 2.2110 -5.9084 0.0915 15 6 1.4525 -4.7508 -0.0116 16 7 0.0735 -4.8326 -0.2252 17 6 -0.4592 -4.5180 -1.4779 18 6 -1.8306 -4.6108 -1.7066 19 6 -2.3109 -4.2878 -2.9647 20 6 -1.4216 -3.8874 -3.9450 21 6 -1.9372 -3.5337 -5.3163 22 9 -2.2439 -2.1696 -5.3616 23 9 -0.9573 -3.8235 -6.2719 24 9 -3.0888 -4.2800 -5.5882 25 7 -0.1289 -3.8097 -3.6968 26 6 0.3697 -4.1022 -2.5121 27 1 -0.4850 0.8401 0.0004 28 1 3.9218 -2.4683 0.3966 29 1 5.2518 -4.5295 0.5806 30 1 4.1628 -6.7264 0.3816 31 1 1.7359 -6.8745 0.0070 32 1 -0.5136 -5.1079 0.4961 33 1 -2.5024 -4.9261 -0.9220 34 1 -3.3678 -4.3486 -3.1780 35 1 1.4339 -4.0226 -2.3454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:04 Heat of formation + Delta-G solvation = -123.151527 kcal Electronic energy + Delta-G solvation = -26954.791397 eV Core-core repulsion = 22503.123975 eV Total energy + Delta-G solvation = -4451.667422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.15108 -48.67671 -48.62289 -41.65370 -40.64561 -38.35513 -36.81012 -34.28558 -33.41886 -32.32213 -30.77112 -29.63168 -27.38719 -26.83848 -24.99627 -23.56297 -23.31168 -22.45232 -19.86051 -19.69444 -19.58408 -19.52570 -19.02026 -18.54762 -17.66340 -16.59766 -16.48957 -16.31265 -16.01487 -15.64743 -15.45987 -15.43957 -15.34412 -15.08339 -15.01469 -14.93390 -14.79563 -14.77865 -14.50054 -14.42040 -13.95010 -13.59228 -13.06356 -12.97097 -12.71709 -12.55941 -12.50400 -12.17833 -11.93686 -11.32092 -10.82901 -10.76456 -10.74496 -9.77662 -9.09431 -8.68037 -8.48048 -6.13519 -0.05279 0.21513 0.46103 0.71039 1.32418 1.39551 1.48470 1.53902 2.13088 2.27557 2.56447 2.63759 2.80854 3.00011 3.14233 3.43184 3.44312 3.68419 3.81316 4.00168 4.09072 4.18735 4.27776 4.44299 4.57367 4.66435 4.76998 4.92683 4.99570 5.09005 5.11783 5.36430 5.55332 5.59722 5.75012 5.95137 6.02637 6.30583 6.61975 6.80656 6.97783 7.75866 8.72704 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.005055 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.807471 B = 5538.128291 C = 7351.457645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.016 4.016 3 Si 1.006 2.994 4 H -0.251 1.251 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.408 4.408 8 H 0.098 0.902 9 O -0.205 6.205 10 C 0.113 3.887 11 C -0.245 4.245 12 C -0.065 4.065 13 C -0.184 4.184 14 C -0.065 4.065 15 C 0.036 3.964 16 N -0.651 5.651 17 C 0.210 3.790 18 C -0.152 4.152 19 C -0.068 4.068 20 C -0.064 4.064 21 C 0.535 3.465 22 F -0.183 7.183 23 F -0.177 7.177 24 F -0.164 7.164 25 N -0.436 5.436 26 C 0.037 3.963 27 H 0.269 0.731 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.418 0.582 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -12.050 -1.845 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.214 4.214 3 Si 0.826 3.174 4 H -0.174 1.174 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.485 4.485 8 H 0.116 0.884 9 O -0.110 6.110 10 C 0.060 3.940 11 C -0.265 4.265 12 C -0.083 4.083 13 C -0.203 4.203 14 C -0.085 4.085 15 C -0.058 4.058 16 N -0.274 5.274 17 C 0.101 3.899 18 C -0.181 4.181 19 C -0.088 4.088 20 C -0.204 4.204 21 C 0.480 3.520 22 F -0.164 7.164 23 F -0.158 7.158 24 F -0.145 7.145 25 N -0.144 5.144 26 C -0.128 4.128 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.257 0.743 33 H 0.198 0.802 34 H 0.195 0.805 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.064 -11.579 -2.538 11.902 hybrid contribution -0.318 1.098 0.713 1.347 sum -1.382 -10.481 -1.826 10.728 Atomic orbital electron populations 1.70172 1.07662 1.28333 1.48472 1.26353 0.96714 1.02272 0.96100 0.84693 0.78558 0.75805 0.78305 1.17443 1.20178 1.19268 1.21736 0.92324 0.81617 1.52781 0.88431 1.83986 1.34824 1.11848 1.80357 1.20288 0.91771 0.87831 0.94125 1.21280 0.93382 1.00356 1.11487 1.21262 1.00321 0.91432 0.95266 1.21088 0.94100 0.98106 1.06977 1.21252 0.94009 0.96412 0.96792 1.16948 0.84017 0.90373 1.14444 1.41473 1.04889 1.71656 1.09382 1.19148 0.93810 0.90306 0.86656 1.21367 0.92600 1.05412 0.98718 1.21813 1.01723 0.93708 0.91582 1.20738 0.91786 1.12789 0.95072 1.17697 0.75161 0.74233 0.84895 1.93207 1.93199 1.33212 1.96831 1.93173 1.62829 1.93117 1.66729 1.93176 1.50423 1.76383 1.94537 1.66801 1.14333 1.10267 1.22985 1.21980 0.99935 1.03148 0.87753 0.92191 0.86451 0.83733 0.82756 0.83170 0.74343 0.80246 0.80490 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.27 13.67 21.61 0.30 -53.98 16 2 C -0.02 -0.87 5.49 84.82 0.47 -0.40 16 3 Si 1.01 42.79 29.55 68.60 2.03 44.82 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.41 -22.64 9.45 67.91 0.64 -22.00 16 8 H 0.10 5.04 5.28 -2.91 -0.02 5.02 16 9 O -0.21 -11.19 9.27 -22.89 -0.21 -11.41 16 10 C 0.11 4.99 5.63 22.70 0.13 5.12 16 11 C -0.25 -9.65 9.13 22.37 0.20 -9.44 16 12 C -0.06 -1.92 10.04 22.28 0.22 -1.70 16 13 C -0.18 -4.71 10.04 22.28 0.22 -4.48 16 14 C -0.07 -1.82 9.96 22.38 0.22 -1.59 16 15 C 0.04 1.28 4.84 38.31 0.19 1.47 16 16 N -0.65 -21.35 5.19 -179.80 -0.93 -22.28 16 17 C 0.21 7.42 6.48 38.31 0.25 7.67 16 18 C -0.15 -4.34 10.05 22.60 0.23 -4.11 16 19 C -0.07 -1.95 9.42 22.34 0.21 -1.74 16 20 C -0.06 -2.27 6.30 42.57 0.27 -2.01 16 21 C 0.54 17.37 3.43 71.24 0.24 17.62 16 22 F -0.18 -6.36 17.30 44.97 0.78 -5.58 16 23 F -0.18 -6.05 17.03 44.97 0.77 -5.29 16 24 F -0.16 -4.39 16.43 44.97 0.74 -3.66 16 25 N -0.44 -18.08 9.95 -183.30 -1.82 -19.91 16 26 C 0.04 1.54 10.21 84.86 0.87 2.41 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.12 4.84 5.70 -2.91 -0.02 4.83 16 29 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 30 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 32 H 0.42 11.16 8.85 -92.71 -0.82 10.34 16 33 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.18 3.67 7.59 -2.91 -0.02 3.65 16 35 H 0.14 6.12 6.43 -2.91 -0.02 6.10 16 Total: -1.00 -70.21 324.60 6.36 -63.85 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.36 Total: 26.63 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.36 Total: -13.20 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -2.46 Total: -96.17 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.21 Total: -11.41 kcal Atomic # 9 Polarization: -16.81 SS G_CDS: 2.28 Total: -14.53 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -70.21 6.36 -63.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.299 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds