Wall clock time and date at job start Tue Mar 31 2020 14:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48503 * 109.47277 * 239.99837 * 3 2 1 5 5 H 1.48503 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47410 * 119.99948 * 3 2 1 7 7 C 1.38627 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00057 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.35785 * 116.99640 * 174.70937 * 9 7 2 11 11 C 1.38720 * 120.10602 * 6.41303 * 10 9 7 12 12 C 1.38177 * 120.00414 * 180.26913 * 11 10 9 13 13 C 1.38351 * 120.21651 * 359.74985 * 12 11 10 14 14 C 1.38178 * 120.20649 * 359.97438 * 13 12 11 15 15 C 1.38781 * 119.98904 * 0.02562 * 14 13 12 16 16 N 1.39792 * 120.10596 * 179.97438 * 15 14 13 17 17 C 1.39710 * 119.99798 * 352.47395 * 16 15 14 18 18 C 1.38952 * 120.49559 * 320.06003 * 17 16 15 19 19 N 1.31784 * 120.65008 * 179.77319 * 18 17 16 20 20 C 1.31884 * 121.80510 * 0.49537 * 19 18 17 21 21 C 1.38244 * 120.93060 * 359.76942 * 20 19 18 22 22 C 1.50704 * 120.37603 * 179.97438 * 21 20 19 23 23 F 1.39902 * 109.47370 * 269.98084 * 22 21 20 24 24 F 1.39902 * 109.46712 * 29.97857 * 22 21 20 25 25 F 1.39898 * 109.47267 * 149.97739 * 22 21 20 26 26 C 1.38524 * 119.24723 * 359.97438 * 21 20 19 27 27 H 0.97007 * 119.99658 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00021 * 0.02562 * 11 10 9 29 29 H 1.08009 * 119.89416 * 179.76602 * 12 11 10 30 30 H 1.08007 * 119.89732 * 179.97438 * 13 12 11 31 31 H 1.07998 * 120.00883 * 180.02562 * 14 13 12 32 32 H 0.96992 * 120.00376 * 172.75318 * 16 15 14 33 33 H 1.08006 * 119.67979 * 0.02562 * 18 17 16 34 34 H 1.07995 * 119.53410 * 179.74975 * 20 19 18 35 35 H 1.08005 * 120.81946 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3680 0.0016 10 6 2.0697 -3.5043 -0.1095 11 6 3.4553 -3.4420 -0.0837 12 6 4.2013 -4.5990 -0.2025 13 6 3.5709 -5.8226 -0.3422 14 6 2.1912 -5.8955 -0.3633 15 6 1.4336 -4.7388 -0.2446 16 7 0.0377 -4.8097 -0.2662 17 6 -0.5959 -6.0188 -0.5638 18 6 -0.0952 -6.8514 -1.5572 19 7 -0.6878 -7.9947 -1.8373 20 6 -1.7740 -8.3887 -1.2015 21 6 -2.3347 -7.6124 -0.2045 22 6 -3.5764 -8.0745 0.5136 23 9 -4.7079 -7.6041 -0.1615 24 9 -3.6019 -9.4729 0.5482 25 9 -3.5722 -7.5757 1.8206 26 6 -1.7422 -6.4049 0.1270 27 1 -0.4850 0.8401 0.0004 28 1 3.9511 -2.4888 0.0253 29 1 5.2801 -4.5481 -0.1860 30 1 4.1591 -6.7237 -0.4351 31 1 1.7025 -6.8524 -0.4721 32 1 -0.4911 -4.0185 -0.0786 33 1 0.7907 -6.5608 -2.1023 34 1 -2.2320 -9.3309 -1.4636 35 1 -2.1586 -5.7786 0.9021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212597520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:07 Heat of formation + Delta-G solvation = -102.843284 kcal Electronic energy + Delta-G solvation = -26303.052788 eV Core-core repulsion = 21852.265998 eV Total energy + Delta-G solvation = -4450.786790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.30065 -47.81891 -47.75871 -40.70648 -39.24569 -36.84960 -35.44655 -33.17884 -32.41387 -30.69633 -29.42231 -27.86537 -26.46991 -25.48850 -23.84418 -22.73145 -21.55570 -21.16976 -18.68368 -18.63738 -18.51384 -18.14477 -17.64844 -17.04257 -16.29941 -16.21832 -15.61304 -14.73827 -14.69878 -14.54515 -14.35016 -14.21216 -14.08578 -13.98366 -13.96515 -13.91540 -13.84063 -13.27482 -13.12388 -12.98773 -12.59015 -12.28721 -11.98015 -11.78352 -11.13291 -11.07708 -10.85058 -10.79444 -10.54605 -10.08695 -9.76477 -9.58096 -8.99903 -8.88515 -7.79176 -6.76869 -6.56676 -4.13509 0.61834 1.02705 2.06720 2.23077 2.46646 3.06525 3.07628 3.10483 3.35553 3.46969 3.58996 3.86348 3.93736 4.26930 4.38002 4.46218 4.67444 4.68587 4.91312 5.02050 5.12306 5.16771 5.46871 5.67289 5.71835 5.79971 5.87851 6.03014 6.17572 6.44033 6.52172 6.69691 6.98259 7.10793 7.26063 7.42434 7.66092 7.74903 7.87622 7.95137 8.89585 9.53439 10.61066 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.003345 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.387245 B = 8368.456818 C = 9736.556783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.182 6.182 10 C 0.117 3.883 11 C -0.204 4.204 12 C -0.103 4.103 13 C -0.171 4.171 14 C -0.145 4.145 15 C 0.110 3.890 16 N -0.664 5.664 17 C 0.151 3.849 18 C 0.087 3.913 19 N -0.453 5.453 20 C 0.102 3.898 21 C -0.207 4.207 22 C 0.516 3.484 23 F -0.175 7.175 24 F -0.176 7.176 25 F -0.175 7.175 26 C -0.081 4.081 27 H 0.271 0.729 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.424 0.576 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -13.116 -0.320 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.109 0.891 9 O -0.087 6.087 10 C 0.063 3.937 11 C -0.225 4.225 12 C -0.122 4.122 13 C -0.191 4.191 14 C -0.167 4.167 15 C 0.014 3.986 16 N -0.287 5.287 17 C 0.047 3.953 18 C -0.074 4.074 19 N -0.160 5.160 20 C -0.057 4.057 21 C -0.211 4.211 22 C 0.461 3.539 23 F -0.156 7.156 24 F -0.157 7.157 25 F -0.157 7.157 26 C -0.110 4.110 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.262 0.738 33 H 0.189 0.811 34 H 0.181 0.819 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.689 -13.458 -0.939 13.756 hybrid contribution -0.271 1.687 0.939 1.949 sum -2.960 -11.771 0.000 12.138 Atomic orbital electron populations 1.70001 1.05910 1.27930 1.46075 1.25250 0.95876 0.98763 0.96479 0.85776 0.78722 0.79717 0.79228 1.19478 1.20277 1.19486 1.21225 0.91794 0.80471 1.53011 0.89066 1.83854 1.34142 1.11241 1.79431 1.18862 0.90513 0.86620 0.97730 1.21001 0.92749 0.99318 1.09391 1.20727 0.98720 0.92267 1.00503 1.20429 0.93353 0.97211 1.08093 1.20541 0.94127 0.95370 1.06650 1.16951 0.81670 0.92040 1.07956 1.41857 1.04051 1.08807 1.74023 1.18620 0.93462 0.89447 0.93754 1.23238 1.00596 0.90569 0.93038 1.67812 1.07825 1.14949 1.25450 1.22381 0.92140 0.99295 0.91879 1.20800 0.97884 0.99225 1.03176 1.18101 0.83690 0.74997 0.77080 1.93237 1.54065 1.88316 1.80015 1.93190 1.96792 1.29390 1.96342 1.93209 1.96746 1.87325 1.38373 1.21206 0.96832 0.94731 0.98274 0.91907 0.85090 0.87242 0.87134 0.86307 0.73759 0.81070 0.81934 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.79 13.67 55.48 0.76 -23.03 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.12 9.49 30.88 0.29 -9.83 16 8 H 0.09 2.20 5.21 -52.48 -0.27 1.93 16 9 O -0.18 -4.69 9.02 0.01 0.00 -4.69 16 10 C 0.12 2.58 6.66 -38.92 -0.26 2.32 16 11 C -0.20 -4.09 9.16 -39.43 -0.36 -4.45 16 12 C -0.10 -1.74 10.04 -39.56 -0.40 -2.14 16 13 C -0.17 -2.74 10.04 -39.56 -0.40 -3.13 16 14 C -0.15 -2.42 8.00 -39.40 -0.32 -2.74 16 15 C 0.11 2.10 6.46 -83.54 -0.54 1.56 16 16 N -0.66 -11.57 5.49 -8.18 -0.04 -11.61 16 17 C 0.15 2.26 5.95 -83.61 -0.50 1.76 16 18 C 0.09 1.24 8.54 -17.31 -0.15 1.10 16 19 N -0.45 -6.19 10.35 -13.07 -0.14 -6.32 16 20 C 0.10 1.22 10.56 -17.53 -0.19 1.04 16 21 C -0.21 -2.54 5.46 -104.51 -0.57 -3.11 16 22 C 0.52 5.92 3.38 36.01 0.12 6.04 16 23 F -0.18 -2.08 17.30 2.25 0.04 -2.04 16 24 F -0.18 -1.91 16.48 2.25 0.04 -1.87 16 25 F -0.18 -2.12 16.53 2.25 0.04 -2.09 16 26 C -0.08 -1.09 9.46 -39.08 -0.37 -1.46 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.13 2.62 5.65 -52.49 -0.30 2.32 16 29 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.12 1.79 5.25 -52.49 -0.28 1.51 16 32 H 0.42 7.85 8.22 -40.82 -0.34 7.52 16 33 H 0.17 2.41 6.48 -52.48 -0.34 2.07 16 34 H 0.16 1.53 7.60 -52.49 -0.40 1.13 16 35 H 0.15 1.85 7.69 -52.48 -0.40 1.45 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -27.53 318.93 -5.55 -33.08 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -2.30 Total: 11.29 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.72 Total: -12.08 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.58 Total: -40.96 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.69 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.53 -5.55 -33.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212597520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.760 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds