Wall clock time and date at job start Tue Mar 31 2020 14:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86793 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47807 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.47218 * 30.00493 * 3 2 1 6 6 H 1.48509 * 109.47022 * 150.00100 * 3 2 1 7 7 C 1.38625 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00156 * 0.02562 * 7 2 1 9 9 O 1.34807 * 119.99698 * 179.97438 * 7 2 1 10 10 C 1.35778 * 116.99815 * 185.42965 * 9 7 2 11 11 C 1.38722 * 120.10914 * 6.16389 * 10 9 7 12 12 C 1.38168 * 120.01249 * 180.27551 * 11 10 9 13 13 C 1.38358 * 120.21369 * 359.74179 * 12 11 10 14 14 C 1.38188 * 120.20440 * 359.97438 * 13 12 11 15 15 C 1.38781 * 119.99047 * 0.02562 * 14 13 12 16 16 N 1.39782 * 120.10651 * 179.97438 * 15 14 13 17 17 C 1.39710 * 120.00059 * 354.16788 * 16 15 14 18 18 C 1.39350 * 120.49071 * 95.62910 * 17 16 15 19 19 C 1.38480 * 118.35441 * 180.02562 * 18 17 16 20 20 C 1.38286 * 119.24468 * 0.02562 * 19 18 17 21 21 N 1.31867 * 120.93244 * 359.97438 * 20 19 18 22 22 C 1.31803 * 121.80273 * 359.70945 * 21 20 19 23 23 C 1.50701 * 119.67786 * 180.31043 * 22 21 20 24 24 F 1.39902 * 109.46943 * 267.67611 * 23 22 21 25 25 F 1.39897 * 109.46918 * 27.67282 * 23 22 21 26 26 F 1.39897 * 109.47377 * 147.67613 * 23 22 21 27 27 H 0.97006 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.08008 * 119.99374 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.90219 * 179.77299 * 12 11 10 30 30 H 1.08000 * 119.90235 * 179.97438 * 13 12 11 31 31 H 1.07996 * 120.00620 * 180.02562 * 14 13 12 32 32 H 0.97001 * 120.00347 * 174.44556 * 16 15 14 33 33 H 1.08003 * 120.82461 * 359.97438 * 18 17 16 34 34 H 1.08002 * 120.38061 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.53697 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4473 2.6526 0.7001 6 1 3.5475 1.4401 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1358 -0.0014 9 8 3.3570 -1.2006 -0.0011 10 6 3.9733 -2.4050 -0.1160 11 6 3.2260 -3.5492 -0.3542 12 6 3.8546 -4.7745 -0.4652 13 6 5.2300 -4.8649 -0.3449 14 6 5.9837 -3.7300 -0.1134 15 6 5.3610 -2.4948 -0.0005 16 7 6.1209 -1.3454 0.2342 17 6 7.4927 -1.4522 0.4765 18 6 8.4087 -1.2920 -0.5613 19 6 9.7579 -1.4076 -0.2714 20 6 10.1492 -1.6766 1.0273 21 7 9.2572 -1.8228 1.9875 22 6 7.9641 -1.7148 1.7566 23 6 6.9869 -1.8841 2.8913 24 9 6.5801 -3.2209 2.9608 25 9 7.6016 -1.5206 4.0943 26 9 5.8718 -1.0682 2.6722 27 1 -0.4850 0.8401 -0.0004 28 1 2.1521 -3.4827 -0.4489 29 1 3.2708 -5.6647 -0.6470 30 1 5.7162 -5.8253 -0.4321 31 1 7.0571 -3.8041 -0.0204 32 1 5.6952 -0.4738 0.2327 33 1 8.0746 -1.0836 -1.5670 34 1 10.4961 -1.2891 -1.0508 35 1 11.2001 -1.7681 1.2586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212598183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:10 Heat of formation + Delta-G solvation = -89.813344 kcal Electronic energy + Delta-G solvation = -27961.972810 eV Core-core repulsion = 23511.751040 eV Total energy + Delta-G solvation = -4450.221770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.88250 -47.40370 -47.35137 -40.77472 -39.27879 -36.84181 -35.43654 -32.92352 -32.37699 -31.05383 -29.35170 -28.08760 -26.39139 -25.25606 -23.68128 -22.69377 -21.40304 -21.26855 -18.62302 -18.35752 -18.25012 -17.92425 -17.66884 -17.16541 -16.52877 -15.97903 -15.58109 -14.62381 -14.42321 -14.26198 -14.13862 -14.01932 -13.96033 -13.76316 -13.73128 -13.56369 -13.49892 -13.45278 -13.20505 -13.10190 -12.32611 -12.25362 -12.13905 -11.69069 -11.08395 -10.89730 -10.76725 -10.45292 -10.25450 -10.20884 -9.67990 -9.50434 -9.39907 -8.86719 -7.80698 -6.84116 -6.40322 -4.04662 0.44755 0.83576 2.11355 2.25953 2.60436 3.18982 3.20369 3.22266 3.34580 3.46953 3.65558 3.98592 4.21572 4.44392 4.53444 4.56964 4.68485 4.74288 4.77748 4.86556 5.01159 5.08904 5.49747 5.68260 5.72502 5.76967 5.85909 6.05546 6.11301 6.38239 6.56597 6.79329 7.05227 7.31580 7.36301 7.46429 7.60960 7.85308 7.95736 8.05872 8.94998 9.55765 10.67880 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.005284 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.341240 B = 5297.338303 C = 5861.166235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.381 4.381 8 H 0.105 0.895 9 O -0.222 6.222 10 C 0.119 3.881 11 C -0.190 4.190 12 C -0.112 4.112 13 C -0.160 4.160 14 C -0.144 4.144 15 C 0.136 3.864 16 N -0.709 5.709 17 C 0.175 3.825 18 C -0.081 4.081 19 C -0.135 4.135 20 C 0.093 3.907 21 N -0.439 5.439 22 C 0.029 3.971 23 C 0.523 3.477 24 F -0.167 7.167 25 F -0.173 7.173 26 F -0.157 7.157 27 H 0.278 0.722 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.420 0.580 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.906 -3.155 -0.532 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.123 0.877 9 O -0.129 6.129 10 C 0.065 3.935 11 C -0.210 4.210 12 C -0.132 4.132 13 C -0.180 4.180 14 C -0.167 4.167 15 C 0.040 3.960 16 N -0.345 5.345 17 C 0.078 3.922 18 C -0.109 4.109 19 C -0.155 4.155 20 C -0.065 4.065 21 N -0.148 5.148 22 C -0.112 4.112 23 C 0.467 3.533 24 F -0.148 7.148 25 F -0.154 7.154 26 F -0.138 7.138 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.260 0.740 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 19.120 -3.041 0.398 19.364 hybrid contribution -0.408 1.111 -0.694 1.372 sum 18.711 -1.931 -0.296 18.813 Atomic orbital electron populations 1.69656 1.05484 1.28314 1.48537 1.24416 0.94984 0.98601 0.96034 0.86229 0.80405 0.81832 0.78656 1.20085 1.20826 1.18468 1.20676 0.76716 0.96513 1.51739 0.87735 1.83473 1.22648 1.25010 1.81725 1.18556 0.89178 0.86802 0.98918 1.21099 1.01000 0.91688 1.07191 1.20696 0.94171 0.96728 1.01569 1.20416 0.93831 0.96910 1.06837 1.20141 0.98176 0.90964 1.07379 1.16922 0.87434 0.86380 1.05273 1.41615 1.02566 1.08385 1.81939 1.18079 0.86495 0.96351 0.91254 1.22208 0.92554 0.96152 1.00004 1.22347 0.96356 0.98328 0.98466 1.22797 0.99177 0.96131 0.88414 1.67187 1.00412 1.10606 1.36591 1.21750 0.92095 1.04588 0.92787 1.17776 0.79664 0.74898 0.80946 1.93253 1.91093 1.34066 1.96367 1.93193 1.82823 1.91517 1.47863 1.93299 1.53561 1.72466 1.94457 0.91151 0.84637 0.87206 0.87354 0.87657 0.73991 0.83155 0.83532 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.26 13.96 55.48 0.77 -24.49 16 2 C 0.06 1.72 5.49 -17.51 -0.10 1.62 16 3 Si 0.90 21.22 28.62 -169.99 -4.86 16.36 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.38 -10.46 9.90 30.88 0.31 -10.15 16 8 H 0.11 2.96 5.54 -52.49 -0.29 2.67 16 9 O -0.22 -5.58 7.84 0.03 0.00 -5.58 16 10 C 0.12 2.65 6.66 -38.92 -0.26 2.39 16 11 C -0.19 -4.03 9.13 -39.43 -0.36 -4.39 16 12 C -0.11 -2.02 10.04 -39.56 -0.40 -2.42 16 13 C -0.16 -2.71 10.04 -39.56 -0.40 -3.11 16 14 C -0.14 -2.51 9.31 -39.40 -0.37 -2.88 16 15 C 0.14 2.62 6.52 -83.55 -0.54 2.07 16 16 N -0.71 -12.16 3.39 -8.18 -0.03 -12.18 16 17 C 0.17 2.50 4.26 -83.60 -0.36 2.15 16 18 C -0.08 -0.87 10.11 -39.08 -0.40 -1.27 16 19 C -0.13 -1.08 10.10 -39.47 -0.40 -1.48 16 20 C 0.09 0.86 11.18 -17.52 -0.20 0.66 16 21 N -0.44 -5.83 9.93 -9.30 -0.09 -5.92 16 22 C 0.03 0.43 6.32 -82.35 -0.52 -0.09 16 23 C 0.52 8.87 3.28 36.01 0.12 8.99 16 24 F -0.17 -2.97 17.30 2.25 0.04 -2.93 16 25 F -0.17 -2.84 17.01 2.25 0.04 -2.80 16 26 F -0.16 -2.96 15.18 2.25 0.03 -2.92 16 27 H 0.28 7.40 8.31 -40.82 -0.34 7.07 16 28 H 0.14 3.02 5.72 -52.48 -0.30 2.72 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.67 7.00 -52.49 -0.37 1.31 16 32 H 0.42 7.57 8.14 -40.82 -0.33 7.24 16 33 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 34 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -30.43 321.90 -5.65 -36.08 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -2.54 Total: 7.43 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.86 Total: -7.89 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.65 Total: -42.59 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.11 Total: -8.65 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.43 -5.65 -36.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.737 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds