Wall clock time and date at job start Tue Mar 31 2020 14:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86793 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47807 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.47218 * 30.00493 * 3 2 1 6 6 H 1.48509 * 109.47022 * 150.00100 * 3 2 1 7 7 C 1.38625 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00156 * 0.02562 * 7 2 1 9 9 O 1.34807 * 119.99698 * 179.97438 * 7 2 1 10 10 C 1.35778 * 116.99815 * 185.42965 * 9 7 2 11 11 C 1.38722 * 120.10914 * 6.16389 * 10 9 7 12 12 C 1.38168 * 120.01249 * 180.27551 * 11 10 9 13 13 C 1.38358 * 120.21369 * 359.74179 * 12 11 10 14 14 C 1.38188 * 120.20440 * 359.97438 * 13 12 11 15 15 C 1.38781 * 119.99047 * 0.02562 * 14 13 12 16 16 N 1.39782 * 120.10651 * 179.97438 * 15 14 13 17 17 C 1.39710 * 120.00059 * 354.16788 * 16 15 14 18 18 C 1.39350 * 120.49071 * 95.62910 * 17 16 15 19 19 C 1.38480 * 118.35441 * 180.02562 * 18 17 16 20 20 C 1.38286 * 119.24468 * 0.02562 * 19 18 17 21 21 N 1.31867 * 120.93244 * 359.97438 * 20 19 18 22 22 C 1.31803 * 121.80273 * 359.70945 * 21 20 19 23 23 C 1.50701 * 119.67786 * 180.31043 * 22 21 20 24 24 F 1.39902 * 109.46943 * 267.67611 * 23 22 21 25 25 F 1.39897 * 109.46918 * 27.67282 * 23 22 21 26 26 F 1.39897 * 109.47377 * 147.67613 * 23 22 21 27 27 H 0.97006 * 119.99613 * 0.02562 * 1 2 3 28 28 H 1.08008 * 119.99374 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.90219 * 179.77299 * 12 11 10 30 30 H 1.08000 * 119.90235 * 179.97438 * 13 12 11 31 31 H 1.07996 * 120.00620 * 180.02562 * 14 13 12 32 32 H 0.97001 * 120.00347 * 174.44556 * 16 15 14 33 33 H 1.08003 * 120.82461 * 359.97438 * 18 17 16 34 34 H 1.08002 * 120.38061 * 180.02562 * 19 18 17 35 35 H 1.07993 * 119.53697 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4473 2.6526 0.7001 6 1 3.5475 1.4401 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1358 -0.0014 9 8 3.3570 -1.2006 -0.0011 10 6 3.9733 -2.4050 -0.1160 11 6 3.2260 -3.5492 -0.3542 12 6 3.8546 -4.7745 -0.4652 13 6 5.2300 -4.8649 -0.3449 14 6 5.9837 -3.7300 -0.1134 15 6 5.3610 -2.4948 -0.0005 16 7 6.1209 -1.3454 0.2342 17 6 7.4927 -1.4522 0.4765 18 6 8.4087 -1.2920 -0.5613 19 6 9.7579 -1.4076 -0.2714 20 6 10.1492 -1.6766 1.0273 21 7 9.2572 -1.8228 1.9875 22 6 7.9641 -1.7148 1.7566 23 6 6.9869 -1.8841 2.8913 24 9 6.5801 -3.2209 2.9608 25 9 7.6016 -1.5206 4.0943 26 9 5.8718 -1.0682 2.6722 27 1 -0.4850 0.8401 -0.0004 28 1 2.1521 -3.4827 -0.4489 29 1 3.2708 -5.6647 -0.6470 30 1 5.7162 -5.8253 -0.4321 31 1 7.0571 -3.8041 -0.0204 32 1 5.6952 -0.4738 0.2327 33 1 8.0746 -1.0836 -1.5670 34 1 10.4961 -1.2891 -1.0508 35 1 11.2001 -1.7681 1.2586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212598183.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:09 Heat of formation + Delta-G solvation = -108.216111 kcal Electronic energy + Delta-G solvation = -27962.770813 eV Core-core repulsion = 23511.751040 eV Total energy + Delta-G solvation = -4451.019774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.21684 -48.73897 -48.71855 -41.77664 -40.79462 -38.43773 -36.72139 -34.40587 -33.77177 -32.21693 -30.90924 -29.46609 -27.47956 -27.18306 -24.72551 -23.77122 -22.97972 -22.65145 -19.88101 -19.68260 -19.64300 -19.54709 -19.29574 -18.30136 -17.59534 -17.46230 -16.47375 -16.34771 -15.75543 -15.68431 -15.64796 -15.48523 -15.39419 -15.12843 -15.12618 -14.87410 -14.84494 -14.65876 -14.54437 -14.16887 -14.02896 -13.93062 -13.51635 -13.03966 -12.65664 -12.64616 -12.32205 -12.05218 -11.65842 -11.37346 -11.03611 -10.88987 -10.71976 -10.35842 -9.37962 -8.46212 -8.34328 -6.14280 -0.44759 0.00490 0.58597 0.73735 1.30073 1.34170 1.44370 1.49423 2.20567 2.28072 2.38937 2.47362 2.80651 2.86241 3.06510 3.15543 3.29012 3.71283 3.74981 3.88430 4.02804 4.11412 4.30505 4.31799 4.51255 4.56794 4.80520 4.93337 4.97174 5.04125 5.25321 5.39400 5.55046 5.65092 5.79284 5.90825 6.08882 6.40937 6.50093 6.62428 6.88890 7.63580 8.65982 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.005284 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.341240 B = 5297.338303 C = 5861.166235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.385 4.385 8 H 0.077 0.923 9 O -0.242 6.242 10 C 0.072 3.928 11 C -0.202 4.202 12 C -0.121 4.121 13 C -0.136 4.136 14 C -0.145 4.145 15 C 0.149 3.851 16 N -0.709 5.709 17 C 0.149 3.851 18 C -0.080 4.080 19 C -0.104 4.104 20 C 0.101 3.899 21 N -0.463 5.463 22 C 0.011 3.989 23 C 0.513 3.487 24 F -0.177 7.177 25 F -0.174 7.174 26 F -0.176 7.176 27 H 0.282 0.718 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.411 0.589 33 H 0.166 0.834 34 H 0.197 0.803 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.754 -3.784 -1.796 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.462 4.462 8 H 0.095 0.905 9 O -0.150 6.150 10 C 0.021 3.979 11 C -0.222 4.222 12 C -0.141 4.141 13 C -0.155 4.155 14 C -0.167 4.167 15 C 0.051 3.949 16 N -0.343 5.343 17 C 0.053 3.947 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.058 4.058 21 N -0.173 5.173 22 C -0.128 4.128 23 C 0.458 3.542 24 F -0.159 7.159 25 F -0.156 7.156 26 F -0.157 7.157 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.155 0.845 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.249 0.751 33 H 0.183 0.817 34 H 0.215 0.785 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 24.019 -3.704 -0.862 24.318 hybrid contribution -1.591 1.049 -0.299 1.929 sum 22.428 -2.654 -1.161 22.614 Atomic orbital electron populations 1.69751 1.06901 1.29276 1.51031 1.25201 0.95801 1.01922 0.96034 0.85271 0.79015 0.77661 0.79137 1.18931 1.19964 1.18351 1.20589 0.78164 0.95798 1.51608 0.90530 1.83411 1.20884 1.26480 1.84234 1.19032 0.90795 0.86364 1.01671 1.21162 1.00078 0.93228 1.07737 1.20979 0.95284 0.96232 1.01603 1.20943 0.93163 0.98463 1.02891 1.20464 0.99429 0.90215 1.06638 1.17094 0.86418 0.87979 1.03364 1.41627 1.04011 1.07283 1.81360 1.18298 0.85336 0.98948 0.92130 1.22419 0.93163 0.95522 0.99620 1.22856 0.95836 0.94610 0.99101 1.23635 1.00252 0.93645 0.88221 1.67186 0.99886 1.11756 1.38424 1.21348 0.92525 1.07147 0.91764 1.18228 0.79825 0.74149 0.81996 1.93213 1.91342 1.34807 1.96513 1.93173 1.82674 1.91476 1.48245 1.93255 1.54877 1.72982 1.94613 0.90860 0.87157 0.84464 0.83253 0.85282 0.75058 0.81657 0.78543 0.77278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.96 21.61 0.30 -55.71 16 2 C 0.01 0.46 5.49 84.82 0.47 0.92 16 3 Si 0.97 45.36 28.62 68.60 1.96 47.32 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.38 -22.59 9.90 67.91 0.67 -21.92 16 8 H 0.08 4.76 5.54 -2.91 -0.02 4.75 16 9 O -0.24 -12.79 7.84 -22.81 -0.18 -12.97 16 10 C 0.07 3.35 6.66 22.70 0.15 3.50 16 11 C -0.20 -8.95 9.13 22.37 0.20 -8.74 16 12 C -0.12 -4.25 10.04 22.28 0.22 -4.03 16 13 C -0.14 -4.16 10.04 22.29 0.22 -3.94 16 14 C -0.14 -4.70 9.31 22.39 0.21 -4.49 16 15 C 0.15 5.70 6.52 38.32 0.25 5.95 16 16 N -0.71 -24.08 3.39 -179.79 -0.61 -24.69 16 17 C 0.15 3.96 4.26 38.32 0.16 4.13 16 18 C -0.08 -1.38 10.11 22.60 0.23 -1.15 16 19 C -0.10 -1.03 10.10 22.34 0.23 -0.81 16 20 C 0.10 1.32 11.18 84.70 0.95 2.27 16 21 N -0.46 -10.91 9.93 -183.33 -1.82 -12.73 16 22 C 0.01 0.32 6.32 42.73 0.27 0.59 16 23 C 0.51 17.52 3.28 71.24 0.23 17.75 16 24 F -0.18 -6.35 17.30 44.97 0.78 -5.57 16 25 F -0.17 -5.78 17.01 44.97 0.77 -5.01 16 26 F -0.18 -6.90 15.18 44.97 0.68 -6.21 16 27 H 0.28 15.70 8.31 -92.70 -0.77 14.93 16 28 H 0.11 5.36 5.72 -2.91 -0.02 5.35 16 29 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.13 3.62 7.00 -2.91 -0.02 3.60 16 32 H 0.41 15.14 8.14 -92.71 -0.75 14.38 16 33 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.20 0.09 8.06 -2.91 -0.02 0.07 16 35 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -72.60 321.90 6.77 -65.83 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.43 Total: 19.71 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 4.47 Total: -9.97 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -2.13 Total: -93.13 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.18 Total: -12.97 kcal Atomic # 9 Polarization: -19.02 SS G_CDS: 2.23 Total: -16.80 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.96 Total: 47.32 kcal Total: -72.60 6.77 -65.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598183.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.389 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds