Wall clock time and date at job start Tue Mar 31 2020 14:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86799 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47151 * 270.00250 * 3 2 1 5 5 H 1.48507 * 109.47048 * 29.99927 * 3 2 1 6 6 H 1.48497 * 109.47403 * 149.99952 * 3 2 1 7 7 C 1.38670 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99670 * 359.97438 * 7 2 1 9 9 O 1.34778 * 119.99929 * 179.97438 * 7 2 1 10 10 C 1.35770 * 116.99872 * 185.07887 * 9 7 2 11 11 C 1.38732 * 120.10476 * 354.33716 * 10 9 7 12 12 C 1.38160 * 120.00531 * 179.97438 * 11 10 9 13 13 C 1.38369 * 120.22427 * 0.02956 * 12 11 10 14 14 C 1.38170 * 120.20956 * 359.97240 * 13 12 11 15 15 C 1.38805 * 119.98867 * 359.75145 * 14 13 12 16 16 N 1.39714 * 120.11134 * 180.27512 * 15 14 13 17 17 C 1.38698 * 119.99514 * 254.91806 * 16 15 14 18 18 C 1.39495 * 119.75665 * 354.99837 * 17 16 15 19 19 C 1.36537 * 120.14550 * 179.77999 * 18 17 16 20 20 C 1.39830 * 119.92546 * 0.48085 * 19 18 17 21 21 C 1.40779 * 120.43321 * 359.77383 * 20 19 18 22 22 C 1.38430 * 119.01358 * 359.97438 * 21 20 19 23 23 N 1.39298 * 109.55075 * 179.97438 * 21 20 19 24 24 C 1.34421 * 111.32128 * 0.02562 * 23 21 20 25 25 O 1.21333 * 126.20362 * 179.97438 * 24 23 21 26 26 C 1.46990 * 132.97409 * 179.75404 * 20 19 18 27 27 O 1.21445 * 127.53008 * 0.04034 * 26 20 19 28 28 H 0.97000 * 120.00528 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00004 * 359.96394 * 11 10 9 30 30 H 1.08005 * 119.88822 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.89599 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.00262 * 180.02562 * 14 13 12 33 33 H 0.97000 * 120.00087 * 74.90965 * 16 15 14 34 34 H 1.08000 * 119.92843 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.03729 * 180.27496 * 19 18 17 36 36 H 1.08003 * 120.00332 * 179.97438 * 22 21 20 37 37 H 0.97006 * 124.34180 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4401 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3566 -1.2009 -0.0011 10 6 3.9729 -2.4058 -0.1087 11 6 3.2247 -3.5740 -0.0936 12 6 3.8540 -4.7990 -0.2037 13 6 5.2304 -4.8663 -0.3287 14 6 5.9844 -3.7086 -0.3448 15 6 5.3608 -2.4729 -0.2405 16 7 6.1203 -1.3004 -0.2622 17 6 6.3394 -0.5944 0.9114 18 6 5.7142 -1.0001 2.0905 19 6 5.9278 -0.3136 3.2512 20 6 6.7674 0.8046 3.2559 21 6 7.3996 1.2265 2.0709 22 6 7.1779 0.5179 0.9026 23 7 8.1762 2.3529 2.3326 24 6 8.1003 2.7091 3.6265 25 8 8.6677 3.6473 4.1461 26 6 7.1878 1.7374 4.3111 27 8 6.8664 1.7234 5.4821 28 1 -0.4851 0.8400 0.0004 29 1 2.1503 -3.5258 0.0045 30 1 3.2697 -5.7073 -0.1913 31 1 5.7168 -5.8268 -0.4141 32 1 7.0584 -3.7650 -0.4429 33 1 6.4943 -0.9803 -1.0979 34 1 5.0627 -1.8615 2.0861 35 1 5.4463 -0.6319 4.1640 36 1 7.6545 0.8278 -0.0157 37 1 8.7047 2.8200 1.6666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212603509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:47 Heat of formation + Delta-G solvation = -6.572523 kcal Electronic energy + Delta-G solvation = -26315.039008 eV Core-core repulsion = 22410.283571 eV Total energy + Delta-G solvation = -3904.755436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73482 -39.98906 -38.68436 -38.13762 -37.13819 -36.38278 -34.31375 -32.56182 -31.10922 -29.70078 -29.24455 -28.51099 -26.01238 -25.38253 -23.07252 -22.15394 -21.66987 -21.01589 -20.52245 -18.39650 -18.02987 -17.68496 -17.44850 -16.87166 -16.18022 -16.11049 -15.70212 -15.16435 -15.10200 -14.66604 -14.14135 -13.97799 -13.92737 -13.81349 -13.72229 -13.41760 -13.18830 -12.80574 -12.62411 -12.37944 -12.10357 -11.74454 -11.52506 -11.30243 -11.12327 -10.98994 -10.94474 -10.36641 -10.05191 -9.63203 -9.53981 -9.04852 -8.56224 -8.38350 -7.71708 -7.39091 -6.59084 -4.25920 0.17145 1.38030 1.67489 1.92849 1.99753 2.51686 2.95281 3.11207 3.15841 3.30619 3.34013 3.71349 3.85593 4.09498 4.17703 4.54704 4.64462 4.66365 4.92248 5.16332 5.25828 5.33023 5.34420 5.51379 5.61159 5.74897 5.84032 5.93405 6.08686 6.23313 6.29961 6.34935 6.37209 6.49512 6.73235 6.80577 6.83505 7.03755 7.09412 7.24886 7.44901 7.56176 7.61212 7.75495 7.87266 8.75184 9.32943 10.47563 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.004806 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.611959 B = 5824.389193 C = 7336.396679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.393 4.393 8 H 0.108 0.892 9 O -0.197 6.197 10 C 0.159 3.841 11 C -0.218 4.218 12 C -0.066 4.066 13 C -0.202 4.202 14 C -0.069 4.069 15 C 0.036 3.964 16 N -0.653 5.653 17 C 0.306 3.694 18 C -0.204 4.204 19 C 0.041 3.959 20 C -0.310 4.310 21 C 0.231 3.769 22 C -0.234 4.234 23 N -0.651 5.651 24 C 0.496 3.504 25 O -0.465 6.465 26 C 0.394 3.606 27 O -0.395 6.395 28 H 0.282 0.718 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.405 0.595 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.509 -3.626 -1.530 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.100 6.100 10 C 0.104 3.896 11 C -0.237 4.237 12 C -0.084 4.084 13 C -0.222 4.222 14 C -0.088 4.088 15 C -0.058 4.058 16 N -0.273 5.273 17 C 0.196 3.804 18 C -0.226 4.226 19 C 0.021 3.979 20 C -0.317 4.317 21 C 0.133 3.867 22 C -0.260 4.260 23 N -0.298 5.298 24 C 0.279 3.721 25 O -0.336 6.336 26 C 0.267 3.733 27 O -0.267 6.267 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.242 0.758 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 13.379 -2.847 -0.447 13.686 hybrid contribution 0.380 1.059 -1.022 1.520 sum 13.759 -1.788 -1.469 13.953 Atomic orbital electron populations 1.69621 1.05637 1.28830 1.46540 1.24435 0.94950 0.98803 0.95252 0.86290 0.80944 0.81578 0.78986 1.19993 1.20645 1.17616 1.20767 0.76702 0.96684 1.52675 0.87442 1.83606 1.22637 1.25076 1.78656 1.19361 0.90667 0.86158 0.93416 1.21255 1.01389 0.91477 1.09614 1.20936 0.94366 0.96917 0.96182 1.20568 0.93912 0.97182 1.10512 1.20821 0.98860 0.90745 0.98391 1.16586 0.86905 0.85606 1.16664 1.41515 1.54359 1.24183 1.07196 1.17772 0.87910 0.87800 0.86901 1.20484 1.05782 1.05202 0.91167 1.20211 0.90236 0.89384 0.98043 1.20037 1.12523 1.04824 0.94286 1.17842 0.89053 0.85447 0.94362 1.19484 1.09310 1.00254 0.96964 1.43278 1.46679 1.28591 1.11233 1.21291 0.82397 0.85458 0.82911 1.90806 1.45176 1.28005 1.69590 1.21985 0.79572 0.83880 0.87866 1.90594 1.49580 1.69377 1.17103 0.90777 0.84457 0.86807 0.86884 0.86428 0.75771 0.84406 0.84729 0.85012 0.73972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.74 13.96 55.48 0.77 -22.97 16 2 C 0.07 1.85 5.49 -17.51 -0.10 1.75 16 3 Si 0.90 20.54 28.62 -169.99 -4.86 15.67 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.25 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.39 -10.00 9.95 30.89 0.31 -9.70 16 8 H 0.11 2.80 5.44 -52.49 -0.29 2.51 16 9 O -0.20 -4.47 7.99 0.13 0.00 -4.47 16 10 C 0.16 3.07 5.45 -38.90 -0.21 2.86 16 11 C -0.22 -3.97 9.16 -39.43 -0.36 -4.33 16 12 C -0.07 -0.98 10.04 -39.56 -0.40 -1.38 16 13 C -0.20 -2.72 10.04 -39.56 -0.40 -3.12 16 14 C -0.07 -0.93 9.97 -39.40 -0.39 -1.32 16 15 C 0.04 0.56 4.85 -83.56 -0.41 0.16 16 16 N -0.65 -9.12 5.14 -8.30 -0.04 -9.17 16 17 C 0.31 4.43 6.49 -83.89 -0.54 3.89 16 18 C -0.20 -3.19 8.84 -39.73 -0.35 -3.55 16 19 C 0.04 0.61 10.05 -39.60 -0.40 0.21 16 20 C -0.31 -4.57 6.33 -104.80 -0.66 -5.23 16 21 C 0.23 2.98 7.15 -83.44 -0.60 2.38 16 22 C -0.23 -2.88 9.90 -39.12 -0.39 -3.27 16 23 N -0.65 -7.33 5.94 -10.00 -0.06 -7.39 16 24 C 0.50 7.07 8.61 -11.56 -0.10 6.97 16 25 O -0.46 -7.70 18.03 5.51 0.10 -7.60 16 26 C 0.39 6.11 7.94 -31.18 -0.25 5.86 16 27 O -0.40 -6.98 18.04 5.41 0.10 -6.88 16 28 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.14 2.69 5.64 -52.49 -0.30 2.40 16 30 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.41 4.60 8.82 -40.82 -0.36 4.24 16 34 H 0.14 2.32 6.23 -52.49 -0.33 1.99 16 35 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.42 3.36 8.96 -40.82 -0.37 2.99 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -29.80 332.97 -7.10 -36.90 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -2.88 Total: 8.69 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -5.24 Total: -7.81 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.67 Total: -39.52 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.20 Total: -18.95 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.80 -7.10 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212603509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.332 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds