Wall clock time and date at job start Tue Mar 31 2020 14:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86799 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47151 * 270.00250 * 3 2 1 5 5 H 1.48507 * 109.47048 * 29.99927 * 3 2 1 6 6 H 1.48497 * 109.47403 * 149.99952 * 3 2 1 7 7 C 1.38670 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99670 * 359.97438 * 7 2 1 9 9 O 1.34778 * 119.99929 * 179.97438 * 7 2 1 10 10 C 1.35770 * 116.99872 * 185.07887 * 9 7 2 11 11 C 1.38732 * 120.10476 * 354.33716 * 10 9 7 12 12 C 1.38160 * 120.00531 * 179.97438 * 11 10 9 13 13 C 1.38369 * 120.22427 * 0.02956 * 12 11 10 14 14 C 1.38170 * 120.20956 * 359.97240 * 13 12 11 15 15 C 1.38805 * 119.98867 * 359.75145 * 14 13 12 16 16 N 1.39714 * 120.11134 * 180.27512 * 15 14 13 17 17 C 1.38698 * 119.99514 * 254.91806 * 16 15 14 18 18 C 1.39495 * 119.75665 * 354.99837 * 17 16 15 19 19 C 1.36537 * 120.14550 * 179.77999 * 18 17 16 20 20 C 1.39830 * 119.92546 * 0.48085 * 19 18 17 21 21 C 1.40779 * 120.43321 * 359.77383 * 20 19 18 22 22 C 1.38430 * 119.01358 * 359.97438 * 21 20 19 23 23 N 1.39298 * 109.55075 * 179.97438 * 21 20 19 24 24 C 1.34421 * 111.32128 * 0.02562 * 23 21 20 25 25 O 1.21333 * 126.20362 * 179.97438 * 24 23 21 26 26 C 1.46990 * 132.97409 * 179.75404 * 20 19 18 27 27 O 1.21445 * 127.53008 * 0.04034 * 26 20 19 28 28 H 0.97000 * 120.00528 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00004 * 359.96394 * 11 10 9 30 30 H 1.08005 * 119.88822 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.89599 * 179.97438 * 13 12 11 32 32 H 1.07995 * 120.00262 * 180.02562 * 14 13 12 33 33 H 0.97000 * 120.00087 * 74.90965 * 16 15 14 34 34 H 1.08000 * 119.92843 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.03729 * 180.27496 * 19 18 17 36 36 H 1.08003 * 120.00332 * 179.97438 * 22 21 20 37 37 H 0.97006 * 124.34180 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4401 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3566 -1.2009 -0.0011 10 6 3.9729 -2.4058 -0.1087 11 6 3.2247 -3.5740 -0.0936 12 6 3.8540 -4.7990 -0.2037 13 6 5.2304 -4.8663 -0.3287 14 6 5.9844 -3.7086 -0.3448 15 6 5.3608 -2.4729 -0.2405 16 7 6.1203 -1.3004 -0.2622 17 6 6.3394 -0.5944 0.9114 18 6 5.7142 -1.0001 2.0905 19 6 5.9278 -0.3136 3.2512 20 6 6.7674 0.8046 3.2559 21 6 7.3996 1.2265 2.0709 22 6 7.1779 0.5179 0.9026 23 7 8.1762 2.3529 2.3326 24 6 8.1003 2.7091 3.6265 25 8 8.6677 3.6473 4.1461 26 6 7.1878 1.7374 4.3111 27 8 6.8664 1.7234 5.4821 28 1 -0.4851 0.8400 0.0004 29 1 2.1503 -3.5258 0.0045 30 1 3.2697 -5.7073 -0.1913 31 1 5.7168 -5.8268 -0.4141 32 1 7.0584 -3.7650 -0.4429 33 1 6.4943 -0.9803 -1.0979 34 1 5.0627 -1.8615 2.0861 35 1 5.4463 -0.6319 4.1640 36 1 7.6545 0.8278 -0.0157 37 1 8.7047 2.8200 1.6666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212603509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:46 Heat of formation + Delta-G solvation = -26.267552 kcal Electronic energy + Delta-G solvation = -26315.893048 eV Core-core repulsion = 22410.283571 eV Total energy + Delta-G solvation = -3905.609477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86522 -41.31721 -39.92933 -39.38258 -38.51434 -37.60374 -35.47219 -34.42793 -32.26318 -30.96895 -30.40948 -29.78791 -27.39411 -26.93148 -24.23076 -23.33397 -23.06559 -22.22426 -21.67129 -19.88282 -19.49196 -18.85882 -18.70723 -18.11946 -17.37173 -17.33781 -16.92715 -16.65449 -16.31286 -16.08722 -15.52196 -15.42542 -15.23290 -14.98529 -14.91447 -14.66643 -14.53222 -14.18183 -14.06443 -14.00156 -13.34413 -13.10184 -12.82694 -12.64850 -12.54531 -12.25526 -12.23807 -12.03675 -11.45942 -11.12863 -10.91229 -10.73961 -9.77195 -9.47623 -9.10096 -8.58391 -8.49849 -6.19616 -1.01580 0.27637 0.42161 0.68571 0.78569 1.30219 1.32854 1.46079 1.49813 1.79488 2.19607 2.25408 2.59706 2.72269 2.78175 3.02613 3.14493 3.48943 3.61840 4.06878 4.15274 4.18062 4.26444 4.29140 4.50194 4.63070 4.67169 4.77708 4.85503 4.99873 5.13500 5.21863 5.26874 5.35793 5.40250 5.53244 5.67046 5.70210 5.77995 5.88517 5.98205 6.09051 6.38071 6.57821 6.73070 6.86182 7.60200 8.61403 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.004806 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.611959 B = 5824.389193 C = 7336.396679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.389 4.389 8 H 0.083 0.917 9 O -0.222 6.222 10 C 0.127 3.873 11 C -0.238 4.238 12 C -0.069 4.069 13 C -0.175 4.175 14 C -0.063 4.063 15 C 0.050 3.950 16 N -0.649 5.649 17 C 0.298 3.702 18 C -0.222 4.222 19 C 0.036 3.964 20 C -0.326 4.326 21 C 0.239 3.761 22 C -0.216 4.216 23 N -0.625 5.625 24 C 0.504 3.496 25 O -0.489 6.489 26 C 0.390 3.610 27 O -0.427 6.427 28 H 0.282 0.718 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.421 0.579 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.173 0.827 37 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.399 -4.607 -3.236 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.465 4.465 8 H 0.101 0.899 9 O -0.128 6.128 10 C 0.075 3.925 11 C -0.258 4.258 12 C -0.087 4.087 13 C -0.194 4.194 14 C -0.082 4.082 15 C -0.044 4.044 16 N -0.270 5.270 17 C 0.188 3.812 18 C -0.244 4.244 19 C 0.016 3.984 20 C -0.333 4.333 21 C 0.140 3.860 22 C -0.241 4.241 23 N -0.274 5.274 24 C 0.287 3.713 25 O -0.362 6.362 26 C 0.265 3.735 27 O -0.300 6.300 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.191 0.809 37 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 17.338 -3.867 -2.211 17.901 hybrid contribution -0.602 0.960 -0.529 1.250 sum 16.736 -2.907 -2.740 17.206 Atomic orbital electron populations 1.69712 1.06931 1.29314 1.50342 1.25101 0.95596 1.01632 0.95851 0.85422 0.79548 0.78170 0.79098 1.19134 1.20770 1.17622 1.20643 0.78349 0.95769 1.51758 0.89928 1.83558 1.20604 1.26662 1.82010 1.19926 0.92308 0.85520 0.94706 1.21285 1.00391 0.93138 1.11020 1.21255 0.95708 0.96347 0.95374 1.21127 0.93006 0.99055 1.06214 1.21287 1.00838 0.89495 0.96560 1.16821 0.85625 0.87409 1.14537 1.41478 1.53908 1.23782 1.07835 1.17892 0.88268 0.88504 0.86513 1.20425 1.06429 1.05326 0.92270 1.20275 0.90351 0.89562 0.98184 1.20069 1.13251 1.04940 0.95007 1.17835 0.88674 0.85585 0.93905 1.19750 1.07795 0.98479 0.98083 1.42995 1.45994 1.27816 1.10551 1.20976 0.81868 0.84793 0.83631 1.90804 1.46207 1.28947 1.70225 1.22319 0.79345 0.84200 0.87618 1.90575 1.50848 1.70269 1.18344 0.90852 0.87332 0.84296 0.82735 0.82536 0.73890 0.86282 0.84436 0.80913 0.71548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.23 13.96 21.62 0.30 -52.93 16 2 C 0.02 0.93 5.49 84.84 0.47 1.40 16 3 Si 0.95 43.44 28.62 68.60 1.96 45.41 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.25 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.39 -20.88 9.95 67.92 0.68 -20.21 16 8 H 0.08 4.69 5.44 -2.91 -0.02 4.67 16 9 O -0.22 -10.35 7.99 -22.44 -0.18 -10.53 16 10 C 0.13 4.89 5.45 22.71 0.12 5.01 16 11 C -0.24 -8.84 9.16 22.37 0.20 -8.64 16 12 C -0.07 -1.88 10.04 22.28 0.22 -1.66 16 13 C -0.18 -3.83 10.04 22.28 0.22 -3.61 16 14 C -0.06 -1.40 9.97 22.39 0.22 -1.17 16 15 C 0.05 1.44 4.85 38.34 0.19 1.63 16 16 N -0.65 -15.92 5.14 -180.17 -0.93 -16.84 16 17 C 0.30 7.79 6.49 38.61 0.25 8.04 16 18 C -0.22 -6.76 8.84 22.18 0.20 -6.56 16 19 C 0.04 1.06 10.05 22.26 0.22 1.28 16 20 C -0.33 -9.19 6.33 -19.98 -0.13 -9.32 16 21 C 0.24 5.40 7.15 38.62 0.28 5.67 16 22 C -0.22 -4.40 9.90 22.57 0.22 -4.18 16 23 N -0.63 -12.07 5.94 -304.11 -1.81 -13.87 16 24 C 0.50 13.54 8.61 87.45 0.75 14.29 16 25 O -0.49 -15.60 18.03 -3.19 -0.06 -15.66 16 26 C 0.39 11.89 7.94 27.71 0.22 12.11 16 27 O -0.43 -15.29 18.04 -3.54 -0.06 -15.36 16 28 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.11 4.61 5.64 -2.91 -0.02 4.60 16 30 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.42 7.72 8.82 -92.71 -0.82 6.90 16 34 H 0.12 4.05 6.23 -2.91 -0.02 4.04 16 35 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.44 5.21 8.96 -92.70 -0.83 4.38 16 Total: -1.00 -69.72 332.97 3.11 -66.61 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.47 Total: 19.09 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 4.34 Total: -5.91 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.43 Total: -83.64 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.30 Total: -41.55 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.96 Total: 45.41 kcal Total: -69.72 3.11 -66.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212603509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.339 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds