Wall clock time and date at job start Tue Mar 31 2020 14:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47222 * 300.00090 * 3 2 1 6 6 H 1.48501 * 109.46923 * 60.00138 * 3 2 1 7 7 C 1.38619 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00386 * 180.02562 * 7 2 1 9 9 O 1.34819 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00174 * 174.70669 * 9 7 2 11 11 C 1.38912 * 119.99306 * 7.66275 * 10 9 7 12 12 C 1.37996 * 120.00505 * 180.02562 * 11 10 9 13 13 C 1.38960 * 119.99413 * 359.97438 * 12 11 10 14 14 N 1.39841 * 120.00611 * 179.97438 * 13 12 11 15 15 C 1.39049 * 120.00302 * 209.79563 * 14 13 12 16 16 C 1.39144 * 119.71199 * 167.19780 * 15 14 13 17 17 C 1.38293 * 119.10127 * 179.97438 * 16 15 14 18 18 C 1.38891 * 118.50439 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.33162 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.47058 * 89.99892 * 19 18 17 21 21 F 1.39908 * 109.46533 * 209.99595 * 19 18 17 22 22 F 1.39899 * 109.47346 * 329.99361 * 19 18 17 23 23 C 1.38037 * 119.33018 * 359.97438 * 18 17 16 24 24 N 1.31953 * 120.85815 * 359.72245 * 23 18 17 25 25 C 1.38960 * 119.98742 * 0.27156 * 13 12 11 26 26 C 1.37995 * 119.99281 * 359.49166 * 25 13 12 27 27 H 0.96999 * 119.99557 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99694 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.00175 * 179.97438 * 12 11 10 30 30 H 0.97004 * 119.99859 * 30.07325 * 14 13 12 31 31 H 1.08000 * 120.44943 * 359.97017 * 16 15 14 32 32 H 1.08002 * 120.75455 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.57257 * 180.02562 * 23 18 17 34 34 H 1.08005 * 120.00031 * 179.69900 * 25 13 12 35 35 H 1.08001 * 119.99392 * 180.22575 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3463 0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3348 -2.3680 -0.0005 10 6 2.0698 -3.5042 -0.1127 11 6 3.4565 -3.4422 -0.0605 12 6 4.2037 -4.5967 -0.1750 13 6 3.5688 -5.8215 -0.3419 14 7 4.3257 -6.9915 -0.4585 15 6 3.8428 -8.0606 -1.2050 16 6 4.6953 -9.1074 -1.5419 17 6 4.2015 -10.1646 -2.2842 18 6 2.8663 -10.1400 -2.6660 19 6 2.2851 -11.2709 -3.4750 20 9 1.7756 -12.2475 -2.6125 21 9 1.2555 -10.7824 -4.2866 22 9 3.2845 -11.8323 -4.2769 23 6 2.0768 -9.0699 -2.2959 24 7 2.5734 -8.0774 -1.5821 25 6 2.1817 -5.8826 -0.3992 26 6 1.4349 -4.7283 -0.2798 27 1 -0.4849 0.8401 0.0004 28 1 3.9500 -2.4903 0.0697 29 1 5.2819 -4.5484 -0.1348 30 1 5.1860 -7.0588 -0.0153 31 1 5.7286 -9.0945 -1.2280 32 1 4.8394 -10.9912 -2.5602 33 1 1.0380 -9.0469 -2.5903 34 1 1.6882 -6.8338 -0.5339 35 1 0.3567 -4.7763 -0.3207 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:01 Heat of formation + Delta-G solvation = -95.312315 kcal Electronic energy + Delta-G solvation = -25613.982425 eV Core-core repulsion = 21163.522202 eV Total energy + Delta-G solvation = -4450.460223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.29815 -47.82711 -47.76034 -40.74354 -39.02709 -37.23966 -34.88729 -32.96251 -32.28018 -31.12317 -30.19723 -27.81290 -25.95339 -25.18341 -23.97818 -22.65047 -21.90777 -21.03307 -18.69678 -18.66430 -18.60702 -18.26724 -17.59501 -17.39001 -16.55094 -15.68863 -14.97220 -14.77724 -14.64441 -14.61405 -14.53396 -14.25259 -14.22798 -14.05469 -13.93442 -13.92183 -13.71401 -13.57865 -13.20874 -12.78596 -12.50838 -12.12349 -12.05026 -11.67402 -11.54622 -11.16049 -10.75463 -10.58684 -10.46236 -10.16864 -9.49063 -9.23337 -8.97461 -8.43257 -8.22112 -6.81995 -6.46227 -4.04002 0.70407 0.98302 2.16311 2.32137 2.51682 3.02479 3.10728 3.12482 3.17752 3.44649 3.62572 3.86087 3.95332 4.24988 4.29037 4.51083 4.56160 4.73509 4.86366 5.07516 5.31638 5.39512 5.48817 5.51332 5.65795 5.77657 5.98797 6.17554 6.22773 6.53300 6.74789 6.86626 6.96801 7.17007 7.27507 7.36847 7.47057 7.76987 7.98301 8.01854 8.99238 9.69788 10.71736 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027412 B = 0.002336 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.195389 B =11981.658258 C =12568.157516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.145 3.855 11 C -0.218 4.218 12 C -0.095 4.095 13 C 0.037 3.963 14 N -0.636 5.636 15 C 0.426 3.574 16 C -0.238 4.238 17 C 0.014 3.986 18 C -0.313 4.313 19 C 0.522 3.478 20 F -0.180 7.180 21 F -0.178 7.178 22 F -0.182 7.182 23 C 0.207 3.793 24 N -0.522 5.522 25 C -0.080 4.080 26 C -0.179 4.179 27 H 0.269 0.731 28 H 0.130 0.870 29 H 0.108 0.892 30 H 0.414 0.586 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 -20.240 -4.047 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.091 3.909 11 C -0.238 4.238 12 C -0.116 4.116 13 C -0.057 4.057 14 N -0.257 5.257 15 C 0.190 3.810 16 C -0.263 4.263 17 C -0.011 4.011 18 C -0.320 4.320 19 C 0.467 3.533 20 F -0.162 7.162 21 F -0.159 7.159 22 F -0.163 7.163 23 C 0.047 3.953 24 N -0.238 5.238 25 C -0.101 4.101 26 C -0.199 4.199 27 H 0.079 0.921 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.251 0.749 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.216 -19.179 -3.761 21.201 hybrid contribution 1.417 -0.008 -0.219 1.434 sum 9.633 -19.187 -3.979 21.835 Atomic orbital electron populations 1.70058 1.05934 1.27556 1.46118 1.25285 0.95848 0.98829 0.96621 0.85653 0.79087 0.80439 0.78267 1.19151 1.20135 1.20157 1.21351 0.91759 0.80883 1.52701 0.89095 1.83990 1.34301 1.11409 1.78385 1.19471 0.90222 0.88274 0.92965 1.20944 0.93773 0.98314 1.10793 1.20418 0.98289 0.90753 1.02093 1.17340 0.90937 0.84254 1.13132 1.41960 1.21882 1.11527 1.50332 1.18667 0.88959 0.86683 0.86728 1.21287 1.01185 0.96372 1.07477 1.20984 0.92841 0.96650 0.90641 1.20599 0.98011 0.99881 1.13503 1.18027 0.75662 0.81857 0.77759 1.93219 1.87733 1.65266 1.69944 1.93194 1.60531 1.87709 1.74497 1.93169 1.61246 1.86731 1.75152 1.22460 0.99633 0.85868 0.87371 1.67808 1.12178 1.26750 1.17093 1.21415 0.91730 0.99304 0.97611 1.20222 0.99781 0.90075 1.09803 0.92058 0.85207 0.87365 0.74910 0.84099 0.83949 0.81611 0.82677 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -10.77 9.48 30.87 0.29 -10.48 16 8 H 0.09 2.31 5.22 -52.48 -0.27 2.04 16 9 O -0.18 -5.01 9.76 -0.03 0.00 -5.01 16 10 C 0.14 3.44 6.64 -39.08 -0.26 3.18 16 11 C -0.22 -4.58 9.15 -39.42 -0.36 -4.94 16 12 C -0.09 -1.65 9.95 -39.40 -0.39 -2.04 16 13 C 0.04 0.61 6.44 -83.67 -0.54 0.07 16 14 N -0.64 -8.02 5.48 -9.93 -0.05 -8.08 16 15 C 0.43 5.25 7.37 -154.95 -1.14 4.11 16 16 C -0.24 -2.20 9.95 -39.22 -0.39 -2.59 16 17 C 0.01 0.13 9.51 -39.32 -0.37 -0.25 16 18 C -0.31 -3.16 5.47 -104.45 -0.57 -3.73 16 19 C 0.52 5.12 3.38 36.01 0.12 5.24 16 20 F -0.18 -1.84 17.30 2.25 0.04 -1.80 16 21 F -0.18 -1.84 16.48 2.25 0.04 -1.80 16 22 F -0.18 -1.77 16.53 2.25 0.04 -1.73 16 23 C 0.21 2.34 10.55 -17.57 -0.19 2.15 16 24 N -0.52 -7.08 6.34 -12.42 -0.08 -7.16 16 25 C -0.08 -1.46 8.80 -39.40 -0.35 -1.81 16 26 C -0.18 -3.77 9.98 -39.42 -0.39 -4.16 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.13 2.72 5.66 -52.48 -0.30 2.42 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.41 3.84 8.82 -40.82 -0.36 3.48 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.14 0.91 7.68 -52.49 -0.40 0.50 16 33 H 0.17 1.56 7.60 -52.49 -0.40 1.16 16 34 H 0.16 2.63 5.26 -52.48 -0.28 2.35 16 35 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -31.20 321.32 -6.49 -37.69 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -2.41 Total: 6.44 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -4.64 Total: -14.30 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.63 Total: -39.59 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.00 Total: -5.01 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.11 Total: -5.34 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.20 -6.49 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.624 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds