Wall clock time and date at job start Tue Mar 31 2020 14:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47222 * 300.00090 * 3 2 1 6 6 H 1.48501 * 109.46923 * 60.00138 * 3 2 1 7 7 C 1.38619 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00386 * 180.02562 * 7 2 1 9 9 O 1.34819 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00174 * 174.70669 * 9 7 2 11 11 C 1.38912 * 119.99306 * 7.66275 * 10 9 7 12 12 C 1.37996 * 120.00505 * 180.02562 * 11 10 9 13 13 C 1.38960 * 119.99413 * 359.97438 * 12 11 10 14 14 N 1.39841 * 120.00611 * 179.97438 * 13 12 11 15 15 C 1.39049 * 120.00302 * 209.79563 * 14 13 12 16 16 C 1.39144 * 119.71199 * 167.19780 * 15 14 13 17 17 C 1.38293 * 119.10127 * 179.97438 * 16 15 14 18 18 C 1.38891 * 118.50439 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.33162 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.47058 * 89.99892 * 19 18 17 21 21 F 1.39908 * 109.46533 * 209.99595 * 19 18 17 22 22 F 1.39899 * 109.47346 * 329.99361 * 19 18 17 23 23 C 1.38037 * 119.33018 * 359.97438 * 18 17 16 24 24 N 1.31953 * 120.85815 * 359.72245 * 23 18 17 25 25 C 1.38960 * 119.98742 * 0.27156 * 13 12 11 26 26 C 1.37995 * 119.99281 * 359.49166 * 25 13 12 27 27 H 0.96999 * 119.99557 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99694 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.00175 * 179.97438 * 12 11 10 30 30 H 0.97004 * 119.99859 * 30.07325 * 14 13 12 31 31 H 1.08000 * 120.44943 * 359.97017 * 16 15 14 32 32 H 1.08002 * 120.75455 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.57257 * 180.02562 * 23 18 17 34 34 H 1.08005 * 120.00031 * 179.69900 * 25 13 12 35 35 H 1.08001 * 119.99392 * 180.22575 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3463 0.0006 5 1 1.8912 2.3964 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3348 -2.3680 -0.0005 10 6 2.0698 -3.5042 -0.1127 11 6 3.4565 -3.4422 -0.0605 12 6 4.2037 -4.5967 -0.1750 13 6 3.5688 -5.8215 -0.3419 14 7 4.3257 -6.9915 -0.4585 15 6 3.8428 -8.0606 -1.2050 16 6 4.6953 -9.1074 -1.5419 17 6 4.2015 -10.1646 -2.2842 18 6 2.8663 -10.1400 -2.6660 19 6 2.2851 -11.2709 -3.4750 20 9 1.7756 -12.2475 -2.6125 21 9 1.2555 -10.7824 -4.2866 22 9 3.2845 -11.8323 -4.2769 23 6 2.0768 -9.0699 -2.2959 24 7 2.5734 -8.0774 -1.5821 25 6 2.1817 -5.8826 -0.3992 26 6 1.4349 -4.7283 -0.2798 27 1 -0.4849 0.8401 0.0004 28 1 3.9500 -2.4903 0.0697 29 1 5.2819 -4.5484 -0.1348 30 1 5.1860 -7.0588 -0.0153 31 1 5.7286 -9.0945 -1.2280 32 1 4.8394 -10.9912 -2.5602 33 1 1.0380 -9.0469 -2.5903 34 1 1.6882 -6.8338 -0.5339 35 1 0.3567 -4.7763 -0.3207 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:01 Heat of formation + Delta-G solvation = -113.095242 kcal Electronic energy + Delta-G solvation = -25614.753551 eV Core-core repulsion = 21163.522202 eV Total energy + Delta-G solvation = -4451.231349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.10395 -48.62997 -48.57167 -41.71383 -40.61083 -38.72873 -36.19367 -34.20030 -33.83268 -32.18992 -31.70649 -29.21400 -27.40273 -26.56929 -24.91530 -23.82907 -23.21352 -22.45459 -20.00417 -19.53324 -19.44321 -19.36839 -18.98293 -18.63902 -18.03593 -16.72515 -16.34169 -16.16946 -15.72575 -15.63648 -15.45317 -15.39995 -15.32499 -15.16729 -15.01550 -14.82279 -14.75956 -14.73739 -14.51810 -14.27574 -13.79610 -13.59842 -13.33777 -13.14830 -12.80199 -12.78134 -12.34808 -12.08644 -11.87276 -11.21424 -11.01471 -10.75886 -10.33372 -9.77177 -9.69678 -8.44352 -8.27731 -6.10415 -0.19243 0.19595 0.60021 0.79680 1.36601 1.45079 1.54907 1.69414 2.04912 2.20125 2.55656 2.81008 2.87505 3.06200 3.19723 3.37312 3.48673 3.61202 3.81596 3.88611 4.09029 4.12192 4.23884 4.55835 4.57444 4.67249 4.74225 4.92279 4.99100 5.12596 5.26575 5.37324 5.45350 5.54142 5.70557 5.95311 6.06720 6.31699 6.35047 7.00795 7.07352 7.83756 8.79840 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027412 B = 0.002336 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.195389 B =11981.658258 C =12568.157516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.026 4.026 3 Si 1.019 2.981 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.409 4.409 8 H 0.103 0.897 9 O -0.235 6.235 10 C 0.100 3.900 11 C -0.222 4.222 12 C -0.092 4.092 13 C 0.074 3.926 14 N -0.634 5.634 15 C 0.404 3.596 16 C -0.217 4.217 17 C 0.016 3.984 18 C -0.304 4.304 19 C 0.526 3.474 20 F -0.182 7.182 21 F -0.183 7.183 22 F -0.178 7.178 23 C 0.191 3.809 24 N -0.556 5.556 25 C -0.085 4.085 26 C -0.189 4.189 27 H 0.271 0.729 28 H 0.126 0.874 29 H 0.152 0.848 30 H 0.433 0.567 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.987 -22.801 -4.566 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.223 4.223 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.486 4.486 8 H 0.121 0.879 9 O -0.142 6.142 10 C 0.050 3.950 11 C -0.241 4.241 12 C -0.112 4.112 13 C -0.021 4.021 14 N -0.259 5.259 15 C 0.169 3.831 16 C -0.240 4.240 17 C -0.010 4.010 18 C -0.311 4.311 19 C 0.471 3.529 20 F -0.163 7.163 21 F -0.164 7.164 22 F -0.159 7.159 23 C 0.032 3.968 24 N -0.273 5.273 25 C -0.106 4.106 26 C -0.209 4.209 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.170 0.830 30 H 0.274 0.726 31 H 0.196 0.804 32 H 0.192 0.808 33 H 0.191 0.809 34 H 0.187 0.813 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.009 -21.859 -4.300 25.308 hybrid contribution 0.380 0.210 -0.173 0.467 sum 12.388 -21.649 -4.473 25.341 Atomic orbital electron populations 1.70212 1.08071 1.28601 1.49347 1.26592 0.96844 1.02786 0.96101 0.84522 0.78341 0.74879 0.78418 1.17224 1.19586 1.19463 1.21861 0.92532 0.81457 1.52702 0.87930 1.83954 1.35962 1.12548 1.81739 1.19948 0.91735 0.87907 0.95442 1.21058 0.92787 0.99712 1.10584 1.20743 1.00229 0.89462 1.00767 1.17423 0.90581 0.85828 1.08258 1.41778 1.22319 1.10296 1.51508 1.18969 0.89212 0.87393 0.87544 1.21619 1.02330 0.94526 1.05566 1.21413 0.92449 0.97386 0.89718 1.20728 0.98669 0.99181 1.12508 1.17959 0.75567 0.81722 0.77643 1.93221 1.87777 1.65318 1.70005 1.93192 1.60792 1.87767 1.74637 1.93179 1.61032 1.86662 1.75056 1.22590 1.00363 0.86040 0.87783 1.67585 1.13522 1.28055 1.18100 1.21664 0.92828 0.98688 0.97380 1.20386 0.99859 0.90511 1.10105 0.91972 0.85656 0.83020 0.72613 0.80392 0.80810 0.80905 0.81270 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.23 13.67 21.61 0.30 -56.94 16 2 C -0.03 -1.50 5.49 84.82 0.47 -1.04 16 3 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.41 -23.79 9.48 67.91 0.64 -23.15 16 8 H 0.10 5.41 5.22 -2.91 -0.02 5.40 16 9 O -0.24 -14.25 9.76 -23.01 -0.22 -14.48 16 10 C 0.10 5.00 6.64 22.59 0.15 5.15 16 11 C -0.22 -9.36 9.15 22.37 0.20 -9.16 16 12 C -0.09 -2.95 9.95 22.39 0.22 -2.73 16 13 C 0.07 2.29 6.44 38.21 0.25 2.54 16 14 N -0.63 -13.50 5.48 -185.34 -1.02 -14.51 16 15 C 0.40 8.50 7.37 133.04 0.98 9.48 16 16 C -0.22 -2.90 9.95 22.50 0.22 -2.68 16 17 C 0.02 0.20 9.51 22.44 0.21 0.42 16 18 C -0.30 -5.21 5.47 -19.75 -0.11 -5.32 16 19 C 0.53 8.95 3.38 71.24 0.24 9.19 16 20 F -0.18 -3.29 17.30 44.97 0.78 -2.51 16 21 F -0.18 -3.46 16.48 44.97 0.74 -2.72 16 22 F -0.18 -2.90 16.53 44.97 0.74 -2.16 16 23 C 0.19 3.96 10.55 84.63 0.89 4.85 16 24 N -0.56 -13.93 6.34 -193.20 -1.22 -15.15 16 25 C -0.09 -3.07 8.80 22.39 0.20 -2.87 16 26 C -0.19 -8.34 9.98 22.37 0.22 -8.11 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.13 5.32 5.66 -2.91 -0.02 5.30 16 29 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.43 5.86 8.82 -92.71 -0.82 5.04 16 31 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.17 1.21 7.68 -2.91 -0.02 1.19 16 33 H 0.17 3.12 7.60 -2.91 -0.02 3.09 16 34 H 0.17 5.64 5.26 -2.91 -0.02 5.63 16 35 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -73.89 321.32 7.29 -66.61 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.37 Total: 20.45 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.80 Total: -23.44 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -1.94 Total: -86.61 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.48 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 2.26 Total: -7.39 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.89 7.29 -66.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.490 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds