Wall clock time and date at job start Tue Mar 31 2020 14:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31678 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47018 * 269.99899 * 3 2 1 5 5 H 1.48499 * 109.46885 * 29.99876 * 3 2 1 6 6 H 1.48496 * 109.46965 * 150.00124 * 3 2 1 7 7 C 1.38462 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99680 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.35693 * 116.99680 * 174.94066 * 9 7 2 11 11 C 1.39115 * 119.88956 * 185.28440 * 10 9 7 12 12 C 1.37690 * 120.10815 * 179.76216 * 11 10 9 13 13 C 1.40010 * 119.88948 * 0.53830 * 12 11 10 14 14 N 1.36203 * 120.10966 * 179.74320 * 13 12 11 15 15 C 1.33202 * 120.00099 * 94.92729 * 14 13 12 16 16 C 1.42000 * 120.68186 * 354.61946 * 15 14 13 17 17 C 1.34823 * 119.23028 * 179.73939 * 16 15 14 18 18 N 1.36071 * 120.71215 * 0.53921 * 17 16 15 19 19 H 0.96997 * 119.26197 * 179.68708 * 18 17 16 20 20 C 1.36070 * 121.47680 * 359.71386 * 18 17 16 21 21 C 1.34826 * 120.70845 * 0.02562 * 20 18 17 22 22 C 1.50701 * 120.38177 * 179.97438 * 21 20 18 23 23 F 1.39905 * 109.46825 * 0.03004 * 22 21 20 24 24 F 1.39897 * 109.47000 * 120.02168 * 22 21 20 25 25 F 1.39891 * 109.47346 * 240.02603 * 22 21 20 26 26 C 1.40020 * 119.78448 * 359.71386 * 13 12 11 27 27 C 1.37688 * 119.88969 * 0.02562 * 26 13 12 28 28 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.94280 * 0.02562 * 11 10 9 30 30 H 1.07999 * 120.05514 * 180.23481 * 12 11 10 31 31 H 1.07994 * 120.38436 * 359.97438 * 16 15 14 32 32 H 1.08008 * 119.64232 * 180.24739 * 17 16 15 33 33 H 1.08001 * 119.64816 * 180.02562 * 20 18 17 34 34 H 1.08004 * 120.05799 * 179.97438 * 26 13 12 35 35 H 1.08001 * 119.94311 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3168 0.0000 0.0000 3 14 2.2508 1.6178 0.0000 4 1 2.4983 2.0464 -1.4001 5 1 1.4482 2.6527 0.7000 6 1 3.5483 1.4402 0.7000 7 6 2.0091 -1.1991 0.0005 8 1 3.0890 -1.1991 0.0001 9 8 1.3349 -2.3667 0.0005 10 6 2.0699 -3.5024 -0.1055 11 6 1.4316 -4.7329 -0.2226 12 6 2.1730 -5.8877 -0.3354 13 6 3.5715 -5.8231 -0.3209 14 7 4.3093 -6.9631 -0.4270 15 6 4.7601 -7.3563 -1.6171 16 6 4.3866 -6.6630 -2.7987 17 6 4.8643 -7.0831 -3.9874 18 7 5.6863 -8.1648 -4.0630 19 1 6.0142 -8.4515 -4.9297 20 6 6.0584 -8.8535 -2.9500 21 6 5.6192 -8.4811 -1.7309 22 6 6.0355 -9.2496 -0.5032 23 9 6.8765 -10.3037 -0.8759 24 9 6.7165 -8.3969 0.3721 25 9 4.9001 -9.7617 0.1336 26 6 4.2093 -4.5827 -0.1976 27 6 3.4591 -3.4331 -0.0908 28 1 -0.4850 0.8401 -0.0004 29 1 0.3527 -4.7821 -0.2292 30 1 1.6766 -6.8421 -0.4300 31 1 3.7306 -5.8068 -2.7453 32 1 4.5877 -6.5582 -4.8899 33 1 6.7126 -9.7077 -3.0442 34 1 5.2878 -4.5278 -0.1855 35 1 3.9501 -2.4758 0.0039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:32 Heat of formation + Delta-G solvation = -87.882783 kcal Electronic energy + Delta-G solvation = -26330.682160 eV Core-core repulsion = 21880.544106 eV Total energy + Delta-G solvation = -4450.138054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.96271 -47.55639 -47.29292 -40.72149 -38.95133 -37.14429 -34.95977 -32.79272 -32.17285 -31.00898 -30.13915 -27.42171 -26.22167 -25.30508 -23.29339 -22.60823 -21.83566 -20.41950 -19.66352 -18.45198 -18.25034 -17.92821 -17.43429 -17.08941 -16.55574 -16.22540 -14.84649 -14.81502 -14.49931 -14.43279 -14.25366 -14.22257 -13.89845 -13.82795 -13.56447 -13.51840 -13.51504 -13.44375 -12.88049 -12.64412 -12.44535 -12.04665 -11.81771 -11.58088 -11.27512 -11.20240 -10.89538 -10.56659 -10.39656 -10.12324 -9.48542 -9.29150 -8.64703 -8.17348 -7.44825 -6.75609 -6.39980 -3.98138 0.85101 1.15709 2.26703 2.31405 2.43530 2.91719 3.14883 3.15880 3.20882 3.35064 3.88815 4.00399 4.05689 4.31110 4.48836 4.56108 4.63262 4.90790 5.08437 5.14670 5.35551 5.41788 5.52479 5.74382 5.82230 5.85795 6.23082 6.31535 6.48070 6.53007 6.65914 6.84495 6.97679 7.09445 7.26161 7.41338 7.47854 7.76511 8.05077 8.56347 9.05867 9.77334 10.78198 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002851 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.699922 B = 9818.697132 C =10110.454270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.037 3.963 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.388 4.388 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.142 3.858 11 C -0.177 4.177 12 C -0.088 4.088 13 C 0.007 3.993 14 N -0.500 5.500 15 C 0.241 3.759 16 C -0.205 4.205 17 C 0.099 3.901 18 N -0.603 5.603 19 H 0.422 0.578 20 C 0.186 3.814 21 C -0.263 4.263 22 C 0.536 3.464 23 F -0.194 7.194 24 F -0.169 7.169 25 F -0.169 7.169 26 C -0.086 4.086 27 C -0.218 4.218 28 H 0.269 0.731 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.105 0.895 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.999 -18.440 -11.965 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.465 4.465 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.089 3.911 11 C -0.197 4.197 12 C -0.108 4.108 13 C -0.092 4.092 14 N -0.210 5.210 15 C 0.067 3.933 16 C -0.231 4.231 17 C -0.026 4.026 18 N -0.210 5.210 19 H 0.258 0.742 20 C 0.054 3.946 21 C -0.274 4.274 22 C 0.481 3.519 23 F -0.175 7.175 24 F -0.151 7.151 25 F -0.151 7.151 26 C -0.106 4.106 27 C -0.238 4.238 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.124 0.876 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.462 -18.343 -10.876 25.218 hybrid contribution 0.464 1.108 -0.676 1.378 sum 13.926 -17.235 -11.552 24.988 Atomic orbital electron populations 1.70097 1.05848 1.27486 1.46675 1.25248 0.95854 0.98761 0.96752 0.85727 0.78945 0.80236 0.78616 1.19967 1.20292 1.19234 1.21275 0.91776 0.80955 1.52472 0.89182 1.83969 1.34217 1.11363 1.78839 1.19434 0.90137 0.88031 0.93527 1.20075 0.99418 0.90034 1.10163 1.20750 0.91913 0.96891 1.01238 1.18182 0.91834 0.89294 1.09920 1.69604 1.15887 1.14871 1.20636 1.18751 0.92425 0.91583 0.90561 1.21839 1.05530 1.04192 0.91492 1.21701 0.92096 0.88547 1.00264 1.41077 1.43997 1.26682 1.09231 0.74221 1.21423 0.93453 0.94076 0.85614 1.19112 1.11871 1.04220 0.92246 1.17537 0.74530 0.76339 0.83467 1.93106 1.72957 1.59980 1.91469 1.93223 1.80161 1.70394 1.71292 1.93218 1.50949 1.87399 1.83498 1.20891 0.98195 0.90847 1.00686 1.21027 0.93685 0.98564 1.10509 0.92147 0.86409 0.87116 0.83032 0.81693 0.80775 0.87640 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.68 55.47 0.76 -24.97 16 2 C 0.04 1.04 5.49 -17.53 -0.10 0.95 16 3 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.04 9.47 30.82 0.29 -10.75 16 8 H 0.09 2.38 5.18 -52.49 -0.27 2.10 16 9 O -0.18 -5.25 9.75 0.23 0.00 -5.25 16 10 C 0.14 3.55 6.66 -38.94 -0.26 3.30 16 11 C -0.18 -3.95 9.97 -39.46 -0.39 -4.34 16 12 C -0.09 -1.77 9.99 -39.12 -0.39 -2.17 16 13 C 0.01 0.14 4.14 -84.59 -0.35 -0.21 16 14 N -0.50 -9.28 9.40 -8.63 -0.08 -9.36 16 15 C 0.24 3.54 6.55 -84.40 -0.55 2.99 16 16 C -0.20 -2.48 9.26 -39.35 -0.36 -2.85 16 17 C 0.10 0.68 11.17 -16.88 -0.19 0.50 16 18 N -0.60 -2.61 5.28 -12.99 -0.07 -2.68 16 19 H 0.42 0.00 8.90 -40.82 -0.36 -0.36 16 20 C 0.19 1.19 10.60 -16.88 -0.18 1.01 16 21 C -0.26 -3.03 5.37 -104.40 -0.56 -3.59 16 22 C 0.54 6.86 3.01 36.01 0.11 6.97 16 23 F -0.19 -1.95 15.96 2.25 0.04 -1.91 16 24 F -0.17 -2.56 17.00 2.25 0.04 -2.52 16 25 F -0.17 -2.53 17.00 2.25 0.04 -2.49 16 26 C -0.09 -1.77 9.99 -39.11 -0.39 -2.17 16 27 C -0.22 -4.98 9.15 -39.46 -0.36 -5.34 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 30 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.15 2.15 7.05 -52.49 -0.37 1.78 16 32 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16 33 H 0.18 0.48 7.09 -52.49 -0.37 0.11 16 34 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 35 H 0.13 2.89 5.62 -52.49 -0.29 2.60 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -36.36 324.15 -5.60 -41.96 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -2.50 Total: 2.27 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.69 Total: -15.71 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.61 Total: -37.01 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.11 Total: -6.92 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.36 -5.60 -41.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.921 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds