Wall clock time and date at job start Tue Mar 31 2020 14:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31678 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47018 * 269.99899 * 3 2 1 5 5 H 1.48499 * 109.46885 * 29.99876 * 3 2 1 6 6 H 1.48496 * 109.46965 * 150.00124 * 3 2 1 7 7 C 1.38462 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99680 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.35693 * 116.99680 * 174.94066 * 9 7 2 11 11 C 1.39115 * 119.88956 * 185.28440 * 10 9 7 12 12 C 1.37690 * 120.10815 * 179.76216 * 11 10 9 13 13 C 1.40010 * 119.88948 * 0.53830 * 12 11 10 14 14 N 1.36203 * 120.10966 * 179.74320 * 13 12 11 15 15 C 1.33202 * 120.00099 * 94.92729 * 14 13 12 16 16 C 1.42000 * 120.68186 * 354.61946 * 15 14 13 17 17 C 1.34823 * 119.23028 * 179.73939 * 16 15 14 18 18 N 1.36071 * 120.71215 * 0.53921 * 17 16 15 19 19 H 0.96997 * 119.26197 * 179.68708 * 18 17 16 20 20 C 1.36070 * 121.47680 * 359.71386 * 18 17 16 21 21 C 1.34826 * 120.70845 * 0.02562 * 20 18 17 22 22 C 1.50701 * 120.38177 * 179.97438 * 21 20 18 23 23 F 1.39905 * 109.46825 * 0.03004 * 22 21 20 24 24 F 1.39897 * 109.47000 * 120.02168 * 22 21 20 25 25 F 1.39891 * 109.47346 * 240.02603 * 22 21 20 26 26 C 1.40020 * 119.78448 * 359.71386 * 13 12 11 27 27 C 1.37688 * 119.88969 * 0.02562 * 26 13 12 28 28 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.94280 * 0.02562 * 11 10 9 30 30 H 1.07999 * 120.05514 * 180.23481 * 12 11 10 31 31 H 1.07994 * 120.38436 * 359.97438 * 16 15 14 32 32 H 1.08008 * 119.64232 * 180.24739 * 17 16 15 33 33 H 1.08001 * 119.64816 * 180.02562 * 20 18 17 34 34 H 1.08004 * 120.05799 * 179.97438 * 26 13 12 35 35 H 1.08001 * 119.94311 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3168 0.0000 0.0000 3 14 2.2508 1.6178 0.0000 4 1 2.4983 2.0464 -1.4001 5 1 1.4482 2.6527 0.7000 6 1 3.5483 1.4402 0.7000 7 6 2.0091 -1.1991 0.0005 8 1 3.0890 -1.1991 0.0001 9 8 1.3349 -2.3667 0.0005 10 6 2.0699 -3.5024 -0.1055 11 6 1.4316 -4.7329 -0.2226 12 6 2.1730 -5.8877 -0.3354 13 6 3.5715 -5.8231 -0.3209 14 7 4.3093 -6.9631 -0.4270 15 6 4.7601 -7.3563 -1.6171 16 6 4.3866 -6.6630 -2.7987 17 6 4.8643 -7.0831 -3.9874 18 7 5.6863 -8.1648 -4.0630 19 1 6.0142 -8.4515 -4.9297 20 6 6.0584 -8.8535 -2.9500 21 6 5.6192 -8.4811 -1.7309 22 6 6.0355 -9.2496 -0.5032 23 9 6.8765 -10.3037 -0.8759 24 9 6.7165 -8.3969 0.3721 25 9 4.9001 -9.7617 0.1336 26 6 4.2093 -4.5827 -0.1976 27 6 3.4591 -3.4331 -0.0908 28 1 -0.4850 0.8401 -0.0004 29 1 0.3527 -4.7821 -0.2292 30 1 1.6766 -6.8421 -0.4300 31 1 3.7306 -5.8068 -2.7453 32 1 4.5877 -6.5582 -4.8899 33 1 6.7126 -9.7077 -3.0442 34 1 5.2878 -4.5278 -0.1855 35 1 3.9501 -2.4758 0.0039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:32 Heat of formation + Delta-G solvation = -113.661651 kcal Electronic energy + Delta-G solvation = -26331.800016 eV Core-core repulsion = 21880.544106 eV Total energy + Delta-G solvation = -4451.255910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.93344 -48.49252 -48.36002 -41.58495 -40.67378 -38.72334 -36.27825 -34.25521 -33.57037 -32.13485 -31.85531 -28.92106 -27.27312 -27.07521 -24.51656 -23.58241 -23.47743 -21.88432 -20.44136 -19.83343 -19.38121 -19.25724 -18.94317 -18.16453 -17.78255 -17.19876 -16.44629 -16.24783 -15.75924 -15.50850 -15.45354 -15.36093 -15.19725 -15.13470 -14.83148 -14.77867 -14.57574 -14.53335 -14.48191 -14.24608 -13.66764 -13.51099 -13.25001 -12.90250 -12.83556 -12.69068 -12.49334 -12.12797 -12.06212 -11.18596 -11.02378 -10.86086 -10.47952 -9.88234 -8.54086 -8.44944 -8.37503 -6.11501 0.07901 0.28695 0.53687 0.66790 1.35254 1.44623 1.53210 1.70532 2.09822 2.19401 2.39482 2.78944 3.01364 3.13810 3.22399 3.51609 3.56953 3.64392 3.87722 4.06772 4.13757 4.17092 4.23496 4.40985 4.50217 4.65471 4.73161 4.93375 5.01497 5.14285 5.23178 5.42569 5.58466 5.68817 5.74886 5.76042 6.04257 6.09097 6.31247 6.99858 7.35221 7.81629 8.79068 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002851 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.699922 B = 9818.697132 C =10110.454270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.411 4.411 8 H 0.099 0.901 9 O -0.232 6.232 10 C 0.098 3.902 11 C -0.175 4.175 12 C -0.098 4.098 13 C 0.060 3.940 14 N -0.588 5.588 15 C 0.264 3.736 16 C -0.269 4.269 17 C 0.164 3.836 18 N -0.567 5.567 19 H 0.454 0.546 20 C 0.236 3.764 21 C -0.311 4.311 22 C 0.535 3.465 23 F -0.175 7.175 24 F -0.190 7.190 25 F -0.189 7.189 26 C -0.101 4.101 27 C -0.213 4.213 28 H 0.272 0.728 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.215 0.785 33 H 0.226 0.774 34 H 0.119 0.881 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.608 -21.033 -15.866 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.487 4.487 8 H 0.116 0.884 9 O -0.139 6.139 10 C 0.048 3.952 11 C -0.194 4.194 12 C -0.119 4.119 13 C -0.040 4.040 14 N -0.302 5.302 15 C 0.097 3.903 16 C -0.296 4.296 17 C 0.035 3.965 18 N -0.173 5.173 19 H 0.297 0.703 20 C 0.101 3.899 21 C -0.322 4.322 22 C 0.480 3.520 23 F -0.157 7.157 24 F -0.171 7.171 25 F -0.170 7.170 26 C -0.121 4.121 27 C -0.232 4.232 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.232 0.768 33 H 0.242 0.758 34 H 0.137 0.863 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.147 -21.041 -14.870 30.950 hybrid contribution -0.312 1.281 0.139 1.326 sum 16.835 -19.760 -14.731 29.848 Atomic orbital electron populations 1.70247 1.07931 1.28669 1.49341 1.26562 0.96891 1.02660 0.95981 0.84584 0.77680 0.74558 0.79353 1.18466 1.19585 1.17950 1.21769 0.92467 0.81572 1.52930 0.88369 1.83931 1.35626 1.12378 1.81983 1.19794 0.91151 0.87874 0.96367 1.20237 0.99670 0.90049 1.09473 1.20995 0.92666 0.96620 1.01583 1.18371 0.91657 0.89860 1.04106 1.69377 1.22075 1.15962 1.22818 1.19127 0.89823 0.91246 0.90121 1.21614 1.09399 1.05748 0.92806 1.22278 0.87579 0.86684 0.99937 1.41433 1.40876 1.24479 1.10547 0.70310 1.22078 0.90390 0.93412 0.83977 1.19062 1.14485 1.04910 0.93778 1.17683 0.74103 0.76596 0.83573 1.93128 1.72297 1.59098 1.91155 1.93181 1.80522 1.71151 1.72251 1.93178 1.52079 1.87664 1.84080 1.21082 0.98728 0.90773 1.01508 1.21049 0.93032 0.99219 1.09922 0.91913 0.86498 0.85473 0.85866 0.76801 0.75766 0.86321 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.11 13.68 21.58 0.30 -57.81 16 2 C -0.02 -1.41 5.49 84.77 0.47 -0.94 16 3 Si 1.02 44.05 29.55 68.60 2.03 46.07 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.41 -24.89 9.47 67.87 0.64 -24.24 16 8 H 0.10 5.50 5.18 -2.91 -0.02 5.48 16 9 O -0.23 -14.65 9.75 -22.08 -0.22 -14.86 16 10 C 0.10 5.29 6.66 22.69 0.15 5.45 16 11 C -0.17 -8.35 9.97 22.35 0.22 -8.12 16 12 C -0.10 -4.16 9.99 22.57 0.23 -3.94 16 13 C 0.06 2.51 4.14 39.33 0.16 2.67 16 14 N -0.59 -22.15 9.40 -181.22 -1.70 -23.85 16 15 C 0.26 7.38 6.55 40.80 0.27 7.64 16 16 C -0.27 -5.86 9.26 22.42 0.21 -5.66 16 17 C 0.16 1.22 11.17 83.25 0.93 2.15 16 18 N -0.57 -0.37 5.28 -195.00 -1.03 -1.40 16 19 H 0.45 -4.37 8.90 -92.71 -0.83 -5.19 16 20 C 0.24 1.42 10.60 83.25 0.88 2.30 16 21 C -0.31 -6.11 5.37 -19.72 -0.11 -6.22 16 22 C 0.54 12.70 3.01 71.24 0.21 12.92 16 23 F -0.18 -2.90 15.96 44.97 0.72 -2.18 16 24 F -0.19 -5.66 17.00 44.97 0.76 -4.89 16 25 F -0.19 -5.56 17.00 44.97 0.76 -4.80 16 26 C -0.10 -4.32 9.99 22.57 0.23 -4.10 16 27 C -0.21 -10.33 9.15 22.35 0.20 -10.13 16 28 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.12 3.48 7.05 -2.91 -0.02 3.46 16 32 H 0.22 -0.24 8.06 -2.91 -0.02 -0.26 16 33 H 0.23 -0.70 7.09 -2.91 -0.02 -0.72 16 34 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 35 H 0.12 5.89 5.62 -2.91 -0.02 5.88 16 Total: -1.00 -92.26 324.15 6.67 -85.59 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.36 Total: 8.36 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 4.70 Total: -30.22 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.44 Total: -83.06 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 9 Polarization: -14.12 SS G_CDS: 2.25 Total: -11.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -92.26 6.67 -85.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.075 kcal (2) G-P(sol) polarization free energy of solvation -92.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds