Wall clock time and date at job start Tue Mar 31 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86804 * 119.99649 * 2 1 4 4 H 1.48503 * 109.46832 * 269.99403 * 3 2 1 5 5 H 1.48491 * 109.47496 * 29.99530 * 3 2 1 6 6 H 1.48501 * 109.47051 * 149.99802 * 3 2 1 7 7 C 1.38617 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99665 * 0.02562 * 7 2 1 9 9 O 1.34807 * 120.00283 * 180.02562 * 7 2 1 10 10 C 1.35787 * 117.00244 * 174.60734 * 9 7 2 11 11 C 1.38912 * 119.99179 * 6.83586 * 10 9 7 12 12 C 1.37989 * 120.00576 * 180.02562 * 11 10 9 13 13 C 1.38967 * 119.99685 * 359.97438 * 12 11 10 14 14 N 1.39814 * 120.00900 * 179.97438 * 13 12 11 15 15 C 1.39207 * 119.99985 * 149.11088 * 14 13 12 16 16 C 1.39517 * 120.86696 * 334.42740 * 15 14 13 17 17 C 1.37876 * 119.06930 * 179.97438 * 16 15 14 18 18 N 1.32019 * 120.84243 * 0.02562 * 17 16 15 19 19 C 1.31987 * 121.91263 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.57630 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47185 * 4.99977 * 20 19 18 22 22 F 1.39901 * 109.47212 * 124.99777 * 20 19 18 23 23 F 1.39899 * 109.47141 * 245.00373 * 20 19 18 24 24 C 1.37908 * 120.84757 * 359.97438 * 19 18 17 25 25 C 1.38964 * 119.98373 * 0.26957 * 13 12 11 26 26 C 1.38000 * 119.99444 * 359.49464 * 25 13 12 27 27 H 0.97005 * 120.00537 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99426 * 0.02562 * 11 10 9 29 29 H 1.08003 * 120.00455 * 179.97438 * 12 11 10 30 30 H 0.97000 * 120.00571 * 329.11344 * 14 13 12 31 31 H 1.08001 * 120.46885 * 359.95898 * 16 15 14 32 32 H 1.07997 * 119.58041 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.47112 * 180.02562 * 24 19 18 34 34 H 1.07995 * 120.00460 * 179.70327 * 25 13 12 35 35 H 1.07999 * 119.99892 * 180.22981 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2004 0.0005 8 1 1.4690 -2.1357 0.0005 9 8 3.3571 -1.2004 0.0011 10 6 3.9736 -2.4048 0.1153 11 6 3.2245 -3.5742 0.0818 12 6 3.8507 -4.7983 0.1984 13 6 5.2307 -4.8613 0.3487 14 7 5.8654 -6.1014 0.4674 15 6 7.1624 -6.2681 -0.0099 16 6 7.6567 -5.4621 -1.0358 17 6 8.9471 -5.6589 -1.4797 18 7 9.7107 -6.5950 -0.9472 19 6 9.2797 -7.3781 0.0239 20 6 10.1962 -8.4303 0.5931 21 9 11.4650 -8.3047 0.0171 22 9 10.2945 -8.2631 1.9786 23 9 9.6801 -9.6998 0.3119 24 6 8.0015 -7.2458 0.5244 25 6 5.9792 -3.6911 0.3873 26 6 5.3531 -2.4673 0.2658 27 1 -0.4851 0.8400 -0.0004 28 1 2.1520 -3.5253 -0.0355 29 1 3.2682 -5.7075 0.1727 30 1 5.4019 -6.8458 0.8822 31 1 7.0371 -4.6949 -1.4763 32 1 9.3382 -5.0394 -2.2732 33 1 7.6553 -7.8896 1.3194 34 1 7.0512 -3.7394 0.5089 35 1 5.9351 -1.5580 0.2920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:27 Heat of formation + Delta-G solvation = -102.512980 kcal Electronic energy + Delta-G solvation = -25646.339827 eV Core-core repulsion = 21195.567360 eV Total energy + Delta-G solvation = -4450.772467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.33887 -47.88465 -47.77731 -40.79929 -39.39822 -37.69618 -35.28282 -32.51434 -32.38292 -31.27867 -30.40557 -28.10511 -26.62079 -25.29114 -23.91201 -22.61873 -22.29352 -21.03635 -18.96784 -18.73229 -18.69379 -18.01115 -17.66647 -17.14977 -16.61156 -16.00595 -15.70292 -14.94790 -14.84552 -14.57937 -14.46033 -14.27685 -14.25567 -14.09836 -13.94814 -13.94261 -13.88854 -13.84866 -13.09626 -12.94327 -12.73310 -12.46074 -12.21596 -12.02151 -11.74205 -11.20789 -10.94941 -10.80613 -10.29013 -9.95431 -9.66317 -9.56522 -9.14538 -8.64592 -8.57167 -7.04593 -6.53797 -4.20082 0.54092 0.95393 1.82208 2.03987 2.26403 3.06672 3.14632 3.17913 3.30990 3.31639 3.35215 3.82230 4.13162 4.19066 4.24857 4.40109 4.64858 4.68407 4.76539 4.93543 4.97811 5.19418 5.28127 5.36521 5.40946 5.71497 5.84377 5.86548 6.05815 6.20808 6.45754 6.54415 6.65699 7.00611 7.11362 7.36328 7.52263 7.53459 7.64389 7.88947 8.80612 9.40563 10.53319 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.034412 B = 0.002307 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.473717 B =12131.822315 C =12507.793595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.213 6.213 10 C 0.147 3.853 11 C -0.196 4.196 12 C -0.096 4.096 13 C 0.059 3.941 14 N -0.663 5.663 15 C 0.247 3.753 16 C -0.200 4.200 17 C 0.135 3.865 18 N -0.485 5.485 19 C 0.070 3.930 20 C 0.522 3.478 21 F -0.163 7.163 22 F -0.173 7.173 23 F -0.174 7.174 24 C -0.191 4.191 25 C -0.105 4.105 26 C -0.165 4.165 27 H 0.281 0.719 28 H 0.139 0.861 29 H 0.115 0.885 30 H 0.409 0.591 31 H 0.151 0.849 32 H 0.168 0.832 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.544 -14.037 0.255 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.118 6.118 10 C 0.094 3.906 11 C -0.215 4.215 12 C -0.117 4.117 13 C -0.034 4.034 14 N -0.285 5.285 15 C 0.135 3.865 16 C -0.224 4.224 17 C -0.021 4.021 18 N -0.197 5.197 19 C -0.070 4.070 20 C 0.467 3.533 21 F -0.144 7.144 22 F -0.155 7.155 23 F -0.155 7.155 24 C -0.217 4.217 25 C -0.126 4.126 26 C -0.185 4.185 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.133 0.867 30 H 0.246 0.754 31 H 0.169 0.831 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.231 -13.647 -0.090 21.207 hybrid contribution -0.909 0.260 0.593 1.116 sum 15.323 -13.388 0.503 20.354 Atomic orbital electron populations 1.69650 1.05603 1.28714 1.47329 1.24482 0.95045 0.98957 0.95482 0.86168 0.80329 0.81309 0.79054 1.19787 1.20728 1.18281 1.20750 0.76771 0.96673 1.52459 0.87580 1.83577 1.22681 1.25601 1.79909 1.19111 0.91642 0.85652 0.94215 1.21147 1.01377 0.91138 1.07880 1.20515 0.92201 0.97682 1.01291 1.17269 0.91700 0.83810 1.10646 1.41845 1.11831 1.11935 1.62866 1.17841 0.85481 0.92886 0.90271 1.22250 0.98563 1.04120 0.97497 1.22539 0.89575 0.92919 0.97028 1.67237 1.37384 1.05608 1.09467 1.20486 0.92213 0.97146 0.97130 1.17924 0.79318 0.80338 0.75720 1.93225 1.41205 1.95766 1.84233 1.93227 1.96234 1.95406 1.30587 1.93224 1.86840 1.42070 1.93395 1.21248 0.93371 1.03594 1.03490 1.20483 0.98827 0.90637 1.02623 1.20069 0.92065 0.97410 1.08957 0.90883 0.84337 0.86695 0.75440 0.83096 0.81459 0.84010 0.86411 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.22 13.96 55.48 0.77 -23.45 16 2 C 0.06 1.72 5.49 -17.52 -0.10 1.62 16 3 Si 0.91 20.62 28.62 -169.99 -4.86 15.76 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.39 -10.34 9.94 30.87 0.31 -10.04 16 8 H 0.11 2.85 5.44 -52.49 -0.29 2.56 16 9 O -0.21 -5.20 8.58 0.00 0.00 -5.20 16 10 C 0.15 3.04 6.65 -39.08 -0.26 2.78 16 11 C -0.20 -3.72 9.16 -39.42 -0.36 -4.08 16 12 C -0.10 -1.48 9.95 -39.40 -0.39 -1.87 16 13 C 0.06 0.84 5.98 -83.68 -0.50 0.34 16 14 N -0.66 -7.39 5.46 -8.21 -0.04 -7.44 16 15 C 0.25 2.73 6.09 -83.57 -0.51 2.22 16 16 C -0.20 -2.17 7.92 -39.24 -0.31 -2.48 16 17 C 0.14 1.39 11.17 -17.60 -0.20 1.19 16 18 N -0.49 -5.85 9.74 -9.57 -0.09 -5.95 16 19 C 0.07 0.80 6.26 -82.65 -0.52 0.28 16 20 C 0.52 5.73 3.31 36.01 0.12 5.85 16 21 F -0.16 -1.95 16.85 2.25 0.04 -1.91 16 22 F -0.17 -1.86 17.15 2.25 0.04 -1.82 16 23 F -0.17 -1.85 17.28 2.25 0.04 -1.81 16 24 C -0.19 -1.98 9.53 -39.24 -0.37 -2.36 16 25 C -0.11 -1.56 7.76 -39.40 -0.31 -1.86 16 26 C -0.17 -2.88 9.98 -39.42 -0.39 -3.27 16 27 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.14 2.80 5.65 -52.49 -0.30 2.50 16 29 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 30 H 0.41 3.64 8.90 -40.82 -0.36 3.28 16 31 H 0.15 1.66 6.43 -52.49 -0.34 1.32 16 32 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.55 6.53 -52.49 -0.34 1.20 16 35 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -28.22 321.66 -5.51 -33.73 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -2.45 Total: 4.91 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.79 Total: -11.68 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.64 Total: -36.83 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.12 Total: -5.54 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.86 Total: 15.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.22 -5.51 -33.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.782 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds