Wall clock time and date at job start Tue Mar 31 2020 14:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86804 * 119.99649 * 2 1 4 4 H 1.48503 * 109.46832 * 269.99403 * 3 2 1 5 5 H 1.48491 * 109.47496 * 29.99530 * 3 2 1 6 6 H 1.48501 * 109.47051 * 149.99802 * 3 2 1 7 7 C 1.38617 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99665 * 0.02562 * 7 2 1 9 9 O 1.34807 * 120.00283 * 180.02562 * 7 2 1 10 10 C 1.35787 * 117.00244 * 174.60734 * 9 7 2 11 11 C 1.38912 * 119.99179 * 6.83586 * 10 9 7 12 12 C 1.37989 * 120.00576 * 180.02562 * 11 10 9 13 13 C 1.38967 * 119.99685 * 359.97438 * 12 11 10 14 14 N 1.39814 * 120.00900 * 179.97438 * 13 12 11 15 15 C 1.39207 * 119.99985 * 149.11088 * 14 13 12 16 16 C 1.39517 * 120.86696 * 334.42740 * 15 14 13 17 17 C 1.37876 * 119.06930 * 179.97438 * 16 15 14 18 18 N 1.32019 * 120.84243 * 0.02562 * 17 16 15 19 19 C 1.31987 * 121.91263 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.57630 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47185 * 4.99977 * 20 19 18 22 22 F 1.39901 * 109.47212 * 124.99777 * 20 19 18 23 23 F 1.39899 * 109.47141 * 245.00373 * 20 19 18 24 24 C 1.37908 * 120.84757 * 359.97438 * 19 18 17 25 25 C 1.38964 * 119.98373 * 0.26957 * 13 12 11 26 26 C 1.38000 * 119.99444 * 359.49464 * 25 13 12 27 27 H 0.97005 * 120.00537 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99426 * 0.02562 * 11 10 9 29 29 H 1.08003 * 120.00455 * 179.97438 * 12 11 10 30 30 H 0.97000 * 120.00571 * 329.11344 * 14 13 12 31 31 H 1.08001 * 120.46885 * 359.95898 * 16 15 14 32 32 H 1.07997 * 119.58041 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.47112 * 180.02562 * 24 19 18 34 34 H 1.07995 * 120.00460 * 179.70327 * 25 13 12 35 35 H 1.07999 * 119.99892 * 180.22981 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2004 0.0005 8 1 1.4690 -2.1357 0.0005 9 8 3.3571 -1.2004 0.0011 10 6 3.9736 -2.4048 0.1153 11 6 3.2245 -3.5742 0.0818 12 6 3.8507 -4.7983 0.1984 13 6 5.2307 -4.8613 0.3487 14 7 5.8654 -6.1014 0.4674 15 6 7.1624 -6.2681 -0.0099 16 6 7.6567 -5.4621 -1.0358 17 6 8.9471 -5.6589 -1.4797 18 7 9.7107 -6.5950 -0.9472 19 6 9.2797 -7.3781 0.0239 20 6 10.1962 -8.4303 0.5931 21 9 11.4650 -8.3047 0.0171 22 9 10.2945 -8.2631 1.9786 23 9 9.6801 -9.6998 0.3119 24 6 8.0015 -7.2458 0.5244 25 6 5.9792 -3.6911 0.3873 26 6 5.3531 -2.4673 0.2658 27 1 -0.4851 0.8400 -0.0004 28 1 2.1520 -3.5253 -0.0355 29 1 3.2682 -5.7075 0.1727 30 1 5.4019 -6.8458 0.8822 31 1 7.0371 -4.6949 -1.4763 32 1 9.3382 -5.0394 -2.2732 33 1 7.6553 -7.8896 1.3194 34 1 7.0512 -3.7394 0.5089 35 1 5.9351 -1.5580 0.2920 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:26 Heat of formation + Delta-G solvation = -118.584173 kcal Electronic energy + Delta-G solvation = -25647.036726 eV Core-core repulsion = 21195.567360 eV Total energy + Delta-G solvation = -4451.469366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.19605 -48.72590 -48.65870 -41.75535 -40.79540 -39.04929 -36.50507 -34.40001 -33.23392 -32.41546 -31.68817 -29.38445 -27.61120 -26.97437 -24.86021 -23.67951 -23.59272 -22.29419 -20.12438 -19.59566 -19.57844 -19.52921 -19.09601 -18.38502 -17.54921 -16.94977 -16.73724 -16.43392 -15.89750 -15.71172 -15.60643 -15.50164 -15.42280 -15.11471 -15.08900 -14.94049 -14.81623 -14.80082 -14.44643 -14.21585 -14.14504 -13.92125 -13.50993 -13.33233 -12.90008 -12.68569 -12.53227 -12.07305 -11.97328 -11.31642 -10.91155 -10.81338 -10.49015 -9.94774 -9.90936 -8.48049 -8.33727 -6.18645 -0.31472 0.02801 0.45323 0.74293 1.34777 1.38013 1.40767 1.53752 2.08669 2.29638 2.44715 2.50269 2.76332 2.96706 3.02007 3.19556 3.35150 3.63518 3.79099 3.91957 4.01071 4.02801 4.05604 4.38661 4.45868 4.57539 4.62580 4.75613 4.88796 5.08833 5.13115 5.33713 5.38043 5.52952 5.70581 5.77102 6.01881 6.29181 6.57573 6.69324 6.86947 7.61288 8.63411 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.034412 B = 0.002307 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.473717 B =12131.822315 C =12507.793595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.395 4.395 8 H 0.084 0.916 9 O -0.244 6.244 10 C 0.105 3.895 11 C -0.205 4.205 12 C -0.098 4.098 13 C 0.098 3.902 14 N -0.657 5.657 15 C 0.237 3.763 16 C -0.201 4.201 17 C 0.138 3.862 18 N -0.502 5.502 19 C 0.057 3.943 20 C 0.525 3.475 21 F -0.170 7.170 22 F -0.172 7.172 23 F -0.172 7.172 24 C -0.179 4.179 25 C -0.101 4.101 26 C -0.157 4.157 27 H 0.284 0.716 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.424 0.576 31 H 0.152 0.848 32 H 0.195 0.805 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.292 -15.562 0.448 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.471 4.471 8 H 0.102 0.898 9 O -0.152 6.152 10 C 0.055 3.945 11 C -0.225 4.225 12 C -0.118 4.118 13 C 0.003 3.997 14 N -0.281 5.281 15 C 0.127 3.873 16 C -0.225 4.225 17 C -0.018 4.018 18 N -0.214 5.214 19 C -0.082 4.082 20 C 0.470 3.530 21 F -0.152 7.152 22 F -0.153 7.153 23 F -0.153 7.153 24 C -0.204 4.204 25 C -0.121 4.121 26 C -0.177 4.177 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.162 0.838 30 H 0.263 0.737 31 H 0.169 0.831 32 H 0.212 0.788 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 19.042 -15.256 0.112 24.400 hybrid contribution -1.427 0.298 0.532 1.552 sum 17.615 -14.958 0.644 23.118 Atomic orbital electron populations 1.69738 1.06910 1.29518 1.50375 1.25250 0.95827 1.02135 0.95709 0.85240 0.78890 0.77573 0.79217 1.19166 1.19721 1.18430 1.20689 0.78133 0.96081 1.52223 0.89826 1.83521 1.21106 1.27426 1.83147 1.19617 0.93063 0.85206 0.96578 1.21134 1.00483 0.92406 1.08448 1.20702 0.93141 0.97274 1.00709 1.17314 0.91197 0.85021 1.06164 1.41712 1.11947 1.11194 1.63265 1.17910 0.85241 0.93493 0.90695 1.22350 0.98828 1.03949 0.97414 1.22967 0.89221 0.92476 0.97130 1.67268 1.38174 1.06134 1.09848 1.20619 0.92740 0.97410 0.97433 1.17889 0.79013 0.80389 0.75710 1.93210 1.41754 1.95814 1.84391 1.93231 1.96213 1.95406 1.30443 1.93229 1.86752 1.41961 1.93390 1.21414 0.92625 1.03074 1.03304 1.20719 1.00065 0.89730 1.01603 1.20304 0.90669 0.99110 1.07584 0.90684 0.86688 0.83804 0.73713 0.83079 0.78840 0.81858 0.83818 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.62 13.96 21.61 0.30 -53.32 16 2 C 0.01 0.51 5.49 84.82 0.47 0.97 16 3 Si 0.97 43.72 28.62 68.60 1.96 45.68 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.39 -22.03 9.94 67.91 0.68 -21.35 16 8 H 0.08 4.85 5.44 -2.91 -0.02 4.83 16 9 O -0.24 -12.36 8.58 -22.92 -0.20 -12.56 16 10 C 0.10 4.39 6.65 22.59 0.15 4.54 16 11 C -0.20 -7.90 9.16 22.37 0.20 -7.70 16 12 C -0.10 -2.79 9.95 22.39 0.22 -2.57 16 13 C 0.10 2.42 5.98 38.22 0.23 2.65 16 14 N -0.66 -11.80 5.46 -179.90 -0.98 -12.79 16 15 C 0.24 4.25 6.09 38.58 0.23 4.49 16 16 C -0.20 -3.58 7.92 22.49 0.18 -3.40 16 17 C 0.14 2.34 11.17 84.58 0.94 3.28 16 18 N -0.50 -10.58 9.74 -184.19 -1.79 -12.37 16 19 C 0.06 1.12 6.26 42.46 0.27 1.39 16 20 C 0.53 10.22 3.31 71.24 0.24 10.45 16 21 F -0.17 -3.74 16.85 44.97 0.76 -2.98 16 22 F -0.17 -3.24 17.15 44.97 0.77 -2.47 16 23 F -0.17 -3.23 17.28 44.97 0.78 -2.46 16 24 C -0.18 -3.01 9.53 22.49 0.21 -2.79 16 25 C -0.10 -2.64 7.76 22.39 0.17 -2.47 16 26 C -0.16 -5.23 9.98 22.37 0.22 -5.00 16 27 H 0.28 15.15 8.31 -92.70 -0.77 14.38 16 28 H 0.12 4.96 5.65 -2.91 -0.02 4.95 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.42 5.57 8.90 -92.71 -0.83 4.75 16 31 H 0.15 2.74 6.43 -2.91 -0.02 2.72 16 32 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.14 3.11 6.53 -2.91 -0.02 3.09 16 35 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -63.77 321.66 6.38 -57.39 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.36 Total: 13.38 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 4.42 Total: -17.51 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.47 Total: -78.48 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.20 Total: -12.56 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 2.31 Total: -7.91 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.96 Total: 45.68 kcal Total: -63.77 6.38 -57.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.193 kcal (2) G-P(sol) polarization free energy of solvation -63.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds