Wall clock time and date at job start Tue Mar 31 2020 14:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48499 * 109.47199 * 239.99869 * 3 2 1 5 5 H 1.48500 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46886 * 119.99610 * 3 2 1 7 7 C 1.38615 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99429 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00471 * 0.02562 * 7 2 1 10 10 C 1.35787 * 117.00498 * 185.12935 * 9 7 2 11 11 C 1.38912 * 119.98530 * 5.80234 * 10 9 7 12 12 C 1.37999 * 120.00554 * 180.02562 * 11 10 9 13 13 C 1.38979 * 119.98973 * 359.97382 * 12 11 10 14 14 N 1.39781 * 120.00560 * 180.02562 * 13 12 11 15 15 C 1.39719 * 120.00116 * 208.34186 * 14 13 12 16 16 C 1.38947 * 120.49750 * 214.00541 * 15 14 13 17 17 N 1.31780 * 120.65236 * 179.72772 * 16 15 14 18 18 C 1.31894 * 121.80298 * 0.26925 * 17 16 15 19 19 C 1.38240 * 120.93436 * 0.02924 * 18 17 16 20 20 C 1.50698 * 120.37720 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.46892 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.46805 * 120.00214 * 20 19 18 23 23 F 1.39899 * 109.47029 * 239.99869 * 20 19 18 24 24 C 1.38525 * 119.24364 * 359.97438 * 19 18 17 25 25 C 1.38972 * 119.98677 * 0.27768 * 13 12 11 26 26 C 1.37995 * 119.98931 * 359.49282 * 25 13 12 27 27 H 0.96997 * 119.99944 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00349 * 0.02562 * 11 10 9 29 29 H 1.07992 * 120.00544 * 179.97438 * 12 11 10 30 30 H 0.97006 * 120.00483 * 28.34036 * 14 13 12 31 31 H 1.08001 * 119.67525 * 359.97438 * 16 15 14 32 32 H 1.07996 * 119.52953 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.82501 * 179.97438 * 24 19 18 34 34 H 1.07996 * 120.00729 * 179.70142 * 25 13 12 35 35 H 1.08010 * 119.99648 * 180.25104 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1035 1.6965 1.2126 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2004 0.0010 9 8 1.3350 -2.3679 0.0005 10 6 2.0703 -3.5043 0.1092 11 6 3.4387 -3.4269 0.3348 12 6 4.1865 -4.5815 0.4448 13 6 3.5701 -5.8218 0.3304 14 7 4.3270 -6.9916 0.4424 15 6 3.9200 -8.1531 -0.2189 16 6 4.1444 -9.4022 0.3469 17 7 3.7570 -10.4994 -0.2717 18 6 3.1515 -10.4602 -1.4428 19 6 2.8985 -9.2556 -2.0720 20 6 2.2064 -9.2255 -3.4103 21 9 1.9164 -10.5329 -3.8148 22 9 1.0173 -8.4961 -3.3039 23 9 3.0424 -8.6193 -4.3541 24 6 3.2884 -8.0765 -1.4583 25 6 2.2018 -5.8989 0.0996 26 6 1.4540 -4.7439 -0.0056 27 1 -0.4850 0.8400 -0.0004 28 1 3.9177 -2.4630 0.4241 29 1 5.2504 -4.5213 0.6198 30 1 5.1350 -6.9970 0.9791 31 1 4.6377 -9.4743 1.3049 32 1 2.8492 -11.3823 -1.9168 33 1 3.1039 -7.1213 -1.9271 34 1 1.7233 -6.8625 0.0058 35 1 0.3899 -4.8037 -0.1810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:12 Heat of formation + Delta-G solvation = -123.495230 kcal Electronic energy + Delta-G solvation = -26132.394329 eV Core-core repulsion = 21680.712003 eV Total energy + Delta-G solvation = -4451.682326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.24404 -48.75578 -48.71741 -41.73749 -40.69558 -38.87455 -36.27957 -34.20128 -34.13682 -32.12086 -31.35716 -28.97377 -27.48355 -27.20902 -24.68526 -24.11882 -23.23380 -22.42719 -20.06124 -19.63676 -19.56880 -19.49638 -18.89343 -18.30312 -17.96521 -17.25281 -16.91726 -16.29525 -15.96176 -15.70707 -15.50481 -15.45996 -15.42919 -15.14137 -14.93987 -14.88702 -14.85769 -14.54502 -14.39332 -14.19889 -13.94245 -13.68047 -13.37339 -13.30878 -13.07050 -12.72072 -12.44635 -12.15184 -11.91728 -11.24546 -11.10874 -10.80461 -10.73090 -9.89742 -9.72558 -8.44619 -8.18315 -6.10635 -0.37422 -0.03826 0.48030 0.76834 1.36958 1.47132 1.52185 1.52872 2.15771 2.20622 2.46022 2.59618 2.82042 2.94768 3.16210 3.31642 3.49163 3.52248 3.65264 3.70303 3.97758 4.01516 4.05559 4.22266 4.46316 4.58437 4.73576 4.80537 4.82912 5.04296 5.14788 5.21891 5.39465 5.43106 5.66073 5.83361 6.03340 6.31854 6.70984 6.73755 7.00200 7.81875 8.78563 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.002938 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.464315 B = 9529.122428 C =10437.362879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.410 4.410 8 H 0.104 0.896 9 O -0.234 6.234 10 C 0.093 3.907 11 C -0.207 4.207 12 C -0.098 4.098 13 C 0.100 3.900 14 N -0.662 5.662 15 C 0.143 3.857 16 C 0.093 3.907 17 N -0.462 5.462 18 C 0.107 3.893 19 C -0.207 4.207 20 C 0.517 3.483 21 F -0.169 7.169 22 F -0.182 7.182 23 F -0.180 7.180 24 C -0.087 4.087 25 C -0.108 4.108 26 C -0.171 4.171 27 H 0.272 0.728 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.427 0.573 31 H 0.196 0.804 32 H 0.186 0.814 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.307 -19.449 -1.493 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.141 6.141 10 C 0.043 3.957 11 C -0.227 4.227 12 C -0.119 4.119 13 C 0.004 3.996 14 N -0.289 5.289 15 C 0.040 3.960 16 C -0.068 4.068 17 N -0.169 5.169 18 C -0.051 4.051 19 C -0.211 4.211 20 C 0.462 3.538 21 F -0.150 7.150 22 F -0.163 7.163 23 F -0.162 7.162 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.191 4.191 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.171 0.829 30 H 0.267 0.733 31 H 0.213 0.787 32 H 0.203 0.797 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.959 -20.042 -1.187 22.873 hybrid contribution -0.256 1.961 -0.628 2.074 sum 10.703 -18.081 -1.815 21.090 Atomic orbital electron populations 1.70197 1.08059 1.28766 1.49066 1.26566 0.96801 1.02762 0.96030 0.84669 0.77376 0.74366 0.79969 1.18213 1.19997 1.17947 1.21765 0.92534 0.81436 1.52929 0.87858 1.83957 1.35756 1.12518 1.81822 1.19850 0.91837 0.87786 0.96254 1.21136 0.93183 0.99832 1.08572 1.20732 1.00162 0.89427 1.01530 1.17298 0.89955 0.86123 1.06187 1.41555 1.28586 1.05309 1.53424 1.18693 0.97774 0.88770 0.90717 1.23299 0.98120 0.85349 1.00057 1.67867 1.09729 1.30892 1.08448 1.22789 0.94302 0.96707 0.91345 1.20828 1.07144 0.97126 0.95990 1.18126 0.76731 0.73722 0.85263 1.93176 1.93683 1.36394 1.91769 1.93243 1.48790 1.77997 1.96282 1.93222 1.71556 1.83613 1.67775 1.21258 0.98701 0.98217 0.93478 1.20536 0.92315 0.96977 1.03066 1.20197 1.00092 0.89860 1.08914 0.91956 0.85515 0.82941 0.73292 0.78747 0.79675 0.84770 0.85235 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.19 13.67 21.61 0.30 -55.89 16 2 C -0.02 -1.36 5.49 84.82 0.47 -0.89 16 3 Si 1.02 41.89 29.55 68.60 2.03 43.91 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.41 -23.22 9.44 67.91 0.64 -22.58 16 8 H 0.10 5.25 5.28 -2.91 -0.02 5.24 16 9 O -0.23 -13.71 9.75 -22.89 -0.22 -13.93 16 10 C 0.09 4.42 6.65 22.59 0.15 4.57 16 11 C -0.21 -8.24 9.13 22.37 0.20 -8.04 16 12 C -0.10 -2.90 9.94 22.39 0.22 -2.67 16 13 C 0.10 2.75 6.00 38.23 0.23 2.98 16 14 N -0.66 -12.44 5.46 -180.08 -0.98 -13.42 16 15 C 0.14 2.72 5.82 38.31 0.22 2.94 16 16 C 0.09 1.48 11.13 84.87 0.94 2.42 16 17 N -0.46 -8.50 10.35 -195.27 -2.02 -10.52 16 18 C 0.11 1.91 10.59 84.68 0.90 2.80 16 19 C -0.21 -4.23 5.38 -19.80 -0.11 -4.34 16 20 C 0.52 11.11 3.33 71.24 0.24 11.35 16 21 F -0.17 -3.22 16.00 44.97 0.72 -2.50 16 22 F -0.18 -4.55 17.24 44.97 0.78 -3.77 16 23 F -0.18 -4.21 17.25 44.97 0.78 -3.43 16 24 C -0.09 -1.94 7.66 22.60 0.17 -1.76 16 25 C -0.11 -3.47 8.09 22.39 0.18 -3.29 16 26 C -0.17 -7.00 9.98 22.37 0.22 -6.78 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.13 5.10 5.70 -2.91 -0.02 5.08 16 29 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.43 5.29 8.92 -92.70 -0.83 4.46 16 31 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.19 2.49 7.16 -2.91 -0.02 2.47 16 33 H 0.13 3.42 7.00 -2.91 -0.02 3.40 16 34 H 0.13 3.71 6.63 -2.91 -0.02 3.69 16 35 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -69.35 322.39 6.41 -62.94 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.36 Total: 19.89 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 4.69 Total: -23.28 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.71 Total: -79.84 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.22 Total: -13.93 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 2.27 Total: -9.71 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -69.35 6.41 -62.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.553 kcal (2) G-P(sol) polarization free energy of solvation -69.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds