Wall clock time and date at job start Tue Mar 31 2020 14:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86799 * 120.00426 * 2 1 4 4 H 1.48493 * 109.47413 * 270.00763 * 3 2 1 5 5 H 1.48507 * 109.46648 * 30.00635 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00234 * 3 2 1 7 7 C 1.38623 * 119.99401 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99403 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.35784 * 116.99967 * 174.60232 * 9 7 2 11 11 C 1.38919 * 119.99358 * 6.84117 * 10 9 7 12 12 C 1.37985 * 120.00647 * 180.02562 * 11 10 9 13 13 C 1.38977 * 119.99381 * 359.97266 * 12 11 10 14 14 N 1.39790 * 120.00746 * 180.02562 * 13 12 11 15 15 C 1.39713 * 119.99928 * 149.12231 * 14 13 12 16 16 C 1.39343 * 120.49182 * 334.38067 * 15 14 13 17 17 C 1.38486 * 118.35060 * 179.97438 * 16 15 14 18 18 C 1.38283 * 119.24607 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.53451 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.47325 * 184.97629 * 19 18 17 21 21 F 1.39898 * 109.47008 * 304.98041 * 19 18 17 22 22 F 1.39908 * 109.46812 * 64.97658 * 19 18 17 23 23 N 1.31856 * 120.93211 * 359.97438 * 18 17 16 24 24 C 1.31809 * 121.80449 * 359.97438 * 23 18 17 25 25 C 1.38972 * 119.98484 * 0.28355 * 13 12 11 26 26 C 1.37989 * 119.99064 * 359.46101 * 25 13 12 27 27 H 0.97007 * 119.99706 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99401 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.00188 * 179.97438 * 12 11 10 30 30 H 0.97000 * 120.00214 * 329.12778 * 14 13 12 31 31 H 1.07996 * 120.82407 * 359.96474 * 16 15 14 32 32 H 1.07997 * 120.37372 * 179.97438 * 17 16 15 33 33 H 1.07996 * 119.67236 * 179.97438 * 24 23 18 34 34 H 1.08005 * 120.00278 * 179.70090 * 25 13 12 35 35 H 1.08003 * 119.99925 * 180.25345 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4474 2.6526 0.7002 6 1 3.5475 1.4400 0.7000 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3680 -0.0005 10 6 2.0695 -3.5041 -0.1149 11 6 3.4568 -3.4402 -0.0819 12 6 4.2038 -4.5945 -0.1987 13 6 3.5681 -5.8212 -0.3486 14 7 4.3245 -6.9909 -0.4663 15 6 3.8180 -8.2015 0.0129 16 6 2.8744 -8.2169 1.0381 17 6 2.4019 -9.4418 1.4787 18 6 2.8781 -10.6002 0.8925 19 6 2.3680 -11.9366 1.3666 20 9 3.0663 -12.9597 0.7163 21 9 2.5601 -12.0457 2.7480 22 9 1.0038 -12.0449 1.0754 23 7 3.7715 -10.5518 -0.0761 24 6 4.2469 -9.4078 -0.5262 25 6 2.1803 -5.8842 -0.3869 26 6 1.4338 -4.7301 -0.2648 27 1 -0.4850 0.8401 0.0004 28 1 3.9507 -2.4869 0.0350 29 1 5.2824 -4.5446 -0.1735 30 1 5.2011 -6.9619 -0.8807 31 1 2.5204 -7.2964 1.4783 32 1 1.6705 -9.4918 2.2718 33 1 4.9782 -9.4084 -1.3208 34 1 1.6861 -6.8369 -0.5082 35 1 0.3552 -4.7794 -0.2904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605155.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:15 Heat of formation + Delta-G solvation = -104.747072 kcal Electronic energy + Delta-G solvation = -25568.862581 eV Core-core repulsion = 21117.993237 eV Total energy + Delta-G solvation = -4450.869345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.21136 -47.75307 -47.66598 -40.76168 -39.26029 -37.51616 -35.10153 -32.53595 -32.40356 -31.17917 -30.34668 -28.09283 -26.02310 -25.17231 -24.14335 -22.60702 -22.15734 -21.05876 -18.79568 -18.62824 -18.60626 -18.23931 -17.62608 -17.41105 -16.62896 -15.84160 -15.13741 -14.77407 -14.72343 -14.58889 -14.44646 -14.29053 -14.14012 -13.90233 -13.83768 -13.81714 -13.76230 -13.70010 -13.15924 -12.98893 -12.79208 -12.33603 -12.01762 -11.80432 -11.66624 -11.25016 -10.89476 -10.78704 -10.55337 -10.00488 -9.87148 -9.52733 -9.06028 -8.49752 -8.43495 -6.90297 -6.57857 -4.15732 0.62751 0.98841 1.91317 2.11176 2.43467 3.04092 3.05458 3.10272 3.15264 3.34326 3.53437 3.85505 3.87000 4.31701 4.34720 4.44648 4.60383 4.77589 4.88897 4.94285 5.10129 5.27793 5.35218 5.45445 5.62715 5.81191 5.88627 5.94554 6.08361 6.27884 6.54976 6.62308 6.78231 7.03556 7.08923 7.27947 7.44656 7.53253 7.68002 7.85521 8.87095 9.54503 10.59500 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.031349 B = 0.002263 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.943446 B =12368.245231 C =12897.085357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.141 3.859 11 C -0.210 4.210 12 C -0.094 4.094 13 C 0.048 3.952 14 N -0.660 5.660 15 C 0.191 3.809 16 C -0.138 4.138 17 C -0.076 4.076 18 C -0.033 4.033 19 C 0.528 3.472 20 F -0.167 7.167 21 F -0.177 7.177 22 F -0.176 7.176 23 N -0.409 5.409 24 C 0.040 3.960 25 C -0.103 4.103 26 C -0.166 4.166 27 H 0.272 0.728 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.409 0.591 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.116 0.884 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -16.558 1.282 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.087 3.913 11 C -0.230 4.230 12 C -0.114 4.114 13 C -0.046 4.046 14 N -0.281 5.281 15 C 0.084 3.916 16 C -0.168 4.168 17 C -0.097 4.097 18 C -0.173 4.173 19 C 0.472 3.528 20 F -0.149 7.149 21 F -0.158 7.158 22 F -0.157 7.157 23 N -0.116 5.116 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.186 4.186 27 H 0.082 0.918 28 H 0.150 0.850 29 H 0.130 0.870 30 H 0.245 0.755 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.134 0.866 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.274 -17.024 0.988 18.539 hybrid contribution 0.506 1.450 0.242 1.555 sum 7.780 -15.574 1.230 17.452 Atomic orbital electron populations 1.70046 1.05996 1.27921 1.45305 1.25314 0.95872 0.98936 0.96360 0.85697 0.78924 0.79937 0.78806 1.19787 1.20158 1.19150 1.21323 0.91797 0.80744 1.53058 0.88984 1.83984 1.34335 1.11439 1.77835 1.19376 0.90202 0.88224 0.93518 1.21028 0.93691 0.98591 1.09667 1.20461 0.98653 0.91055 1.01263 1.17225 0.90507 0.84992 1.11845 1.41934 1.20135 1.03503 1.62502 1.19041 0.93864 0.87472 0.91260 1.21478 1.00074 0.98986 0.96229 1.21570 0.98095 0.91280 0.98732 1.20484 1.02934 0.92131 1.01765 1.17825 0.75301 0.84689 0.74948 1.93203 1.78807 1.61740 1.81116 1.93208 1.94924 1.96540 1.31124 1.93222 1.32789 1.96546 1.93181 1.66957 1.06723 1.29531 1.08436 1.22325 1.03503 0.85375 1.01315 1.20485 0.91717 0.97703 1.02398 1.20078 0.99762 0.89822 1.08927 0.91830 0.84958 0.86964 0.75482 0.82911 0.83820 0.81829 0.86625 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.11 13.67 55.48 0.76 -23.35 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.39 -10.31 9.48 30.87 0.29 -10.02 16 8 H 0.09 2.20 5.21 -52.49 -0.27 1.93 16 9 O -0.17 -4.61 9.75 0.00 0.00 -4.61 16 10 C 0.14 3.09 6.65 -39.08 -0.26 2.83 16 11 C -0.21 -4.03 9.16 -39.42 -0.36 -4.39 16 12 C -0.09 -1.46 9.95 -39.40 -0.39 -1.85 16 13 C 0.05 0.70 5.98 -83.68 -0.50 0.20 16 14 N -0.66 -7.38 5.47 -8.27 -0.05 -7.43 16 15 C 0.19 2.15 6.07 -83.61 -0.51 1.64 16 16 C -0.14 -1.60 7.95 -39.08 -0.31 -1.91 16 17 C -0.08 -0.83 9.60 -39.47 -0.38 -1.21 16 18 C -0.03 -0.40 6.26 -82.57 -0.52 -0.92 16 19 C 0.53 6.16 3.31 36.00 0.12 6.28 16 20 F -0.17 -2.10 16.85 2.25 0.04 -2.06 16 21 F -0.18 -1.98 17.16 2.25 0.04 -1.94 16 22 F -0.18 -2.05 17.28 2.25 0.04 -2.01 16 23 N -0.41 -5.13 9.72 -9.30 -0.09 -5.22 16 24 C 0.04 0.43 11.10 -17.31 -0.19 0.24 16 25 C -0.10 -1.61 7.75 -39.40 -0.31 -1.92 16 26 C -0.17 -3.13 9.98 -39.42 -0.39 -3.53 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.13 2.55 5.65 -52.49 -0.30 2.26 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.41 3.51 8.90 -40.82 -0.36 3.15 16 31 H 0.15 1.83 6.43 -52.49 -0.34 1.50 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.63 6.53 -52.48 -0.34 1.29 16 35 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -29.12 322.78 -5.66 -34.79 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -2.44 Total: 6.13 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -3.80 Total: -13.59 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.62 Total: -35.99 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.00 Total: -4.61 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.12 Total: -6.02 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.12 -5.66 -34.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605155.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.962 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds