Wall clock time and date at job start Tue Mar 31 2020 14:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86799 * 120.00426 * 2 1 4 4 H 1.48493 * 109.47413 * 270.00763 * 3 2 1 5 5 H 1.48507 * 109.46648 * 30.00635 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00234 * 3 2 1 7 7 C 1.38623 * 119.99401 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99403 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.35784 * 116.99967 * 174.60232 * 9 7 2 11 11 C 1.38919 * 119.99358 * 6.84117 * 10 9 7 12 12 C 1.37985 * 120.00647 * 180.02562 * 11 10 9 13 13 C 1.38977 * 119.99381 * 359.97266 * 12 11 10 14 14 N 1.39790 * 120.00746 * 180.02562 * 13 12 11 15 15 C 1.39713 * 119.99928 * 149.12231 * 14 13 12 16 16 C 1.39343 * 120.49182 * 334.38067 * 15 14 13 17 17 C 1.38486 * 118.35060 * 179.97438 * 16 15 14 18 18 C 1.38283 * 119.24607 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.53451 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.47325 * 184.97629 * 19 18 17 21 21 F 1.39898 * 109.47008 * 304.98041 * 19 18 17 22 22 F 1.39908 * 109.46812 * 64.97658 * 19 18 17 23 23 N 1.31856 * 120.93211 * 359.97438 * 18 17 16 24 24 C 1.31809 * 121.80449 * 359.97438 * 23 18 17 25 25 C 1.38972 * 119.98484 * 0.28355 * 13 12 11 26 26 C 1.37989 * 119.99064 * 359.46101 * 25 13 12 27 27 H 0.97007 * 119.99706 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99401 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.00188 * 179.97438 * 12 11 10 30 30 H 0.97000 * 120.00214 * 329.12778 * 14 13 12 31 31 H 1.07996 * 120.82407 * 359.96474 * 16 15 14 32 32 H 1.07997 * 120.37372 * 179.97438 * 17 16 15 33 33 H 1.07996 * 119.67236 * 179.97438 * 24 23 18 34 34 H 1.08005 * 120.00278 * 179.70090 * 25 13 12 35 35 H 1.08003 * 119.99925 * 180.25345 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4474 2.6526 0.7002 6 1 3.5475 1.4400 0.7000 7 6 2.0088 -1.2006 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3680 -0.0005 10 6 2.0695 -3.5041 -0.1149 11 6 3.4568 -3.4402 -0.0819 12 6 4.2038 -4.5945 -0.1987 13 6 3.5681 -5.8212 -0.3486 14 7 4.3245 -6.9909 -0.4663 15 6 3.8180 -8.2015 0.0129 16 6 2.8744 -8.2169 1.0381 17 6 2.4019 -9.4418 1.4787 18 6 2.8781 -10.6002 0.8925 19 6 2.3680 -11.9366 1.3666 20 9 3.0663 -12.9597 0.7163 21 9 2.5601 -12.0457 2.7480 22 9 1.0038 -12.0449 1.0754 23 7 3.7715 -10.5518 -0.0761 24 6 4.2469 -9.4078 -0.5262 25 6 2.1803 -5.8842 -0.3869 26 6 1.4338 -4.7301 -0.2648 27 1 -0.4850 0.8401 0.0004 28 1 3.9507 -2.4869 0.0350 29 1 5.2824 -4.5446 -0.1735 30 1 5.2011 -6.9619 -0.8807 31 1 2.5204 -7.2964 1.4783 32 1 1.6705 -9.4918 2.2718 33 1 4.9782 -9.4084 -1.3208 34 1 1.6861 -6.8369 -0.5082 35 1 0.3552 -4.7794 -0.2904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605155.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:15 Heat of formation + Delta-G solvation = -121.955751 kcal Electronic energy + Delta-G solvation = -25569.608806 eV Core-core repulsion = 21117.993237 eV Total energy + Delta-G solvation = -4451.615569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.14030 -48.66907 -48.61531 -41.75286 -40.70304 -38.92481 -36.37332 -34.21430 -33.44796 -32.33390 -31.67397 -29.39733 -27.48048 -26.53884 -25.10545 -23.72361 -23.48052 -22.38151 -19.96741 -19.66233 -19.55507 -19.52880 -19.03423 -18.45279 -18.00813 -16.90283 -16.35515 -16.11123 -15.98190 -15.72086 -15.54944 -15.40535 -15.37665 -15.06882 -14.93691 -14.83980 -14.77764 -14.69814 -14.52079 -14.27840 -14.04074 -13.66991 -13.35901 -13.18422 -12.94161 -12.78171 -12.41994 -12.12655 -12.03094 -11.21990 -10.93130 -10.82325 -10.72591 -9.88612 -9.71503 -8.45240 -8.22442 -6.11001 -0.32076 0.09293 0.48971 0.73112 1.37690 1.46023 1.51324 1.54313 2.13402 2.19571 2.42629 2.61172 2.82166 2.95858 3.15014 3.41253 3.53409 3.62230 3.71312 3.86372 3.96127 4.04564 4.06528 4.45866 4.50521 4.56170 4.75042 4.80442 4.92867 5.06031 5.14807 5.22073 5.39597 5.43832 5.66160 5.82663 6.03510 6.27824 6.63017 6.64254 7.00180 7.81117 8.78079 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.031349 B = 0.002263 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.943446 B =12368.245231 C =12897.085357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.016 2.984 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.409 4.409 8 H 0.105 0.895 9 O -0.232 6.232 10 C 0.099 3.901 11 C -0.212 4.212 12 C -0.091 4.091 13 C 0.089 3.911 14 N -0.651 5.651 15 C 0.185 3.815 16 C -0.145 4.145 17 C -0.073 4.073 18 C -0.040 4.040 19 C 0.529 3.471 20 F -0.173 7.173 21 F -0.174 7.174 22 F -0.176 7.176 23 N -0.430 5.430 24 C 0.054 3.946 25 C -0.099 4.099 26 C -0.172 4.172 27 H 0.271 0.729 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.427 0.573 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.195 0.805 34 H 0.137 0.863 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.381 -18.527 0.998 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.485 4.485 8 H 0.122 0.878 9 O -0.139 6.139 10 C 0.048 3.952 11 C -0.232 4.232 12 C -0.112 4.112 13 C -0.007 4.007 14 N -0.275 5.275 15 C 0.079 3.921 16 C -0.174 4.174 17 C -0.094 4.094 18 C -0.179 4.179 19 C 0.474 3.526 20 F -0.155 7.155 21 F -0.155 7.155 22 F -0.158 7.158 23 N -0.138 5.138 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.192 4.192 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.169 0.831 30 H 0.267 0.733 31 H 0.166 0.834 32 H 0.180 0.820 33 H 0.212 0.788 34 H 0.155 0.845 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.168 -19.100 0.704 21.650 hybrid contribution -0.218 1.511 0.326 1.561 sum 9.950 -17.589 1.030 20.235 Atomic orbital electron populations 1.70197 1.08039 1.28708 1.49066 1.26550 0.96789 1.02743 0.96062 0.84612 0.77908 0.74752 0.79148 1.18978 1.19996 1.17413 1.21810 0.92556 0.81371 1.52794 0.87762 1.83951 1.35927 1.12543 1.81462 1.19887 0.91619 0.87950 0.95721 1.21128 0.92798 0.99873 1.09353 1.20749 1.00409 0.89922 1.00070 1.17276 0.90264 0.86035 1.07093 1.41761 1.20579 1.02220 1.62893 1.19082 0.93999 0.87572 0.91399 1.21546 1.00280 0.99052 0.96521 1.21745 0.98120 0.90644 0.98905 1.20628 1.02968 0.92428 1.01849 1.17822 0.75204 0.84568 0.74993 1.93190 1.78959 1.62041 1.81277 1.93214 1.94904 1.96526 1.30900 1.93223 1.32815 1.96544 1.93200 1.67019 1.07357 1.30394 1.09010 1.22784 1.02889 0.84412 1.01001 1.20647 0.92379 0.97308 1.01622 1.20233 0.99989 0.90049 1.08909 0.91954 0.85597 0.83088 0.73319 0.83370 0.81981 0.78805 0.84511 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.04 13.67 21.61 0.30 -54.74 16 2 C -0.02 -1.31 5.49 84.82 0.47 -0.85 16 3 Si 1.02 41.02 29.55 68.60 2.03 43.05 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.41 -22.52 9.48 67.91 0.64 -21.87 16 8 H 0.11 5.16 5.21 -2.91 -0.02 5.14 16 9 O -0.23 -13.16 9.75 -22.90 -0.22 -13.38 16 10 C 0.10 4.46 6.65 22.59 0.15 4.61 16 11 C -0.21 -8.02 9.16 22.37 0.20 -7.82 16 12 C -0.09 -2.54 9.95 22.39 0.22 -2.32 16 13 C 0.09 2.25 5.98 38.23 0.23 2.48 16 14 N -0.65 -11.44 5.47 -180.08 -0.99 -12.43 16 15 C 0.19 3.40 6.07 38.31 0.23 3.63 16 16 C -0.14 -2.87 7.95 22.60 0.18 -2.69 16 17 C -0.07 -1.39 9.60 22.34 0.21 -1.18 16 18 C -0.04 -0.85 6.26 42.57 0.27 -0.58 16 19 C 0.53 11.29 3.31 71.24 0.24 11.52 16 20 F -0.17 -4.04 16.85 44.97 0.76 -3.29 16 21 F -0.17 -3.57 17.16 44.97 0.77 -2.79 16 22 F -0.18 -3.79 17.28 44.97 0.78 -3.01 16 23 N -0.43 -9.38 9.72 -183.33 -1.78 -11.16 16 24 C 0.05 0.93 11.10 84.86 0.94 1.87 16 25 C -0.10 -2.90 7.75 22.39 0.17 -2.72 16 26 C -0.17 -6.56 9.98 22.37 0.22 -6.34 16 27 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 28 H 0.13 4.87 5.65 -2.91 -0.02 4.85 16 29 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 30 H 0.43 4.93 8.90 -92.71 -0.82 4.10 16 31 H 0.15 3.13 6.43 -2.91 -0.02 3.11 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.14 3.45 6.53 -2.91 -0.02 3.43 16 35 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -67.88 322.78 6.38 -61.50 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.36 Total: 18.51 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 4.38 Total: -22.25 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -2.47 Total: -78.33 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.22 Total: -13.38 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 2.31 Total: -9.09 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -67.88 6.38 -61.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605155.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.460 kcal (2) G-P(sol) polarization free energy of solvation -67.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds