Wall clock time and date at job start Tue Mar 31 2020 14:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48503 * 109.47155 * 270.00335 * 3 2 1 5 5 H 1.48493 * 109.47100 * 30.00748 * 3 2 1 6 6 H 1.48502 * 109.47110 * 150.00581 * 3 2 1 7 7 C 1.38611 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00484 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.35785 * 117.00336 * 174.88991 * 9 7 2 11 11 C 1.38919 * 119.99160 * 6.24331 * 10 9 7 12 12 C 1.37987 * 120.00733 * 180.02562 * 11 10 9 13 13 C 1.38975 * 119.99426 * 359.97438 * 12 11 10 14 14 N 1.39789 * 120.00821 * 180.02562 * 13 12 11 15 15 C 1.39710 * 120.00157 * 190.30755 * 14 13 12 16 16 C 1.38962 * 120.49390 * 260.73713 * 15 14 13 17 17 N 1.31773 * 120.65168 * 180.26164 * 16 15 14 18 18 C 1.31891 * 121.80369 * 359.73969 * 17 16 15 19 19 C 1.38233 * 120.93368 * 0.02562 * 18 17 16 20 20 C 1.38528 * 119.24708 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.82318 * 179.97438 * 20 19 18 22 22 F 1.39908 * 109.47157 * 0.02562 * 21 20 19 23 23 F 1.39899 * 109.47433 * 240.00321 * 21 20 19 24 24 F 1.39896 * 109.46973 * 119.99911 * 21 20 19 25 25 C 1.38976 * 119.98533 * 0.27777 * 13 12 11 26 26 C 1.37999 * 119.99149 * 359.45140 * 25 13 12 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99515 * 359.97438 * 11 10 9 29 29 H 1.07999 * 120.00593 * 179.97438 * 12 11 10 30 30 H 0.97003 * 120.00061 * 10.30087 * 14 13 12 31 31 H 1.08004 * 119.66955 * 0.02562 * 16 15 14 32 32 H 1.07997 * 119.53090 * 180.02562 * 18 17 16 33 33 H 1.08006 * 120.37381 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.00264 * 179.72026 * 25 13 12 35 35 H 1.07995 * 119.99595 * 180.29645 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4473 2.6526 0.7002 6 1 3.5474 1.4402 0.6999 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3350 -2.3679 -0.0005 10 6 2.0703 -3.5043 -0.1088 11 6 3.4577 -3.4388 -0.0825 12 6 4.2053 -4.5933 -0.1931 13 6 3.5701 -5.8218 -0.3302 14 7 4.3272 -6.9917 -0.4417 15 6 3.7080 -8.1936 -0.7936 16 6 3.3713 -9.1251 0.1811 17 7 2.7919 -10.2620 -0.1478 18 6 2.5052 -10.5592 -1.4004 19 6 2.8049 -9.6815 -2.4254 20 6 3.4145 -8.4741 -2.1261 21 6 3.7576 -7.4911 -3.2157 22 9 3.3664 -8.0121 -4.4538 23 9 5.1378 -7.2630 -3.2204 24 9 3.0864 -6.2857 -2.9845 25 6 2.1822 -5.8865 -0.3618 26 6 1.4351 -4.7321 -0.2456 27 1 -0.4850 0.8400 0.0004 28 1 3.9512 -2.4840 0.0237 29 1 5.2839 -4.5423 -0.1730 30 1 5.2825 -6.9689 -0.2749 31 1 3.5902 -8.9169 1.2180 32 1 2.0296 -11.5015 -1.6285 33 1 2.5658 -9.9339 -3.4480 34 1 1.6885 -6.8405 -0.4729 35 1 0.3565 -4.7828 -0.2653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605164.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:37 Heat of formation + Delta-G solvation = -115.778285 kcal Electronic energy + Delta-G solvation = -27086.270023 eV Core-core repulsion = 22634.922329 eV Total energy + Delta-G solvation = -4451.347694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.22835 -48.77069 -48.67484 -41.68495 -40.63096 -38.75987 -36.24271 -34.24555 -33.95978 -32.00597 -31.32254 -28.91987 -27.70520 -27.05824 -24.57437 -23.74834 -23.51914 -22.41941 -19.96844 -19.66549 -19.58249 -19.54467 -18.95109 -18.25220 -17.72988 -17.43028 -16.40914 -16.28676 -15.99540 -15.67335 -15.58604 -15.43029 -15.33878 -15.12526 -15.09699 -14.84003 -14.78617 -14.78208 -14.43958 -14.17568 -13.76475 -13.47439 -13.30892 -13.26817 -13.02559 -12.71768 -12.36926 -12.10821 -11.43311 -11.26888 -11.15125 -10.78294 -10.36583 -10.11455 -9.82677 -8.41025 -8.18315 -6.05951 -0.38916 -0.13242 0.54114 0.82099 1.36950 1.46343 1.50896 1.54114 2.20268 2.24693 2.47890 2.62180 2.86742 2.88579 3.20296 3.30932 3.43380 3.60915 3.71251 3.87293 4.00047 4.08984 4.11092 4.50164 4.51035 4.54215 4.66174 4.83438 4.86906 5.07814 5.19767 5.31128 5.45186 5.47815 5.72077 5.88980 6.08483 6.41928 6.70574 6.79076 7.04453 7.89074 8.83216 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021366 B = 0.003324 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.178677 B = 8422.174960 C = 8809.047437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.026 4.026 3 Si 1.016 2.984 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.408 4.408 8 H 0.101 0.899 9 O -0.239 6.239 10 C 0.079 3.921 11 C -0.197 4.197 12 C -0.122 4.122 13 C 0.142 3.858 14 N -0.702 5.702 15 C 0.149 3.851 16 C 0.101 3.899 17 N -0.469 5.469 18 C 0.105 3.895 19 C -0.114 4.114 20 C -0.158 4.158 21 C 0.508 3.492 22 F -0.176 7.176 23 F -0.176 7.176 24 F -0.177 7.177 25 C -0.118 4.118 26 C -0.160 4.160 27 H 0.270 0.730 28 H 0.124 0.876 29 H 0.146 0.854 30 H 0.422 0.578 31 H 0.180 0.820 32 H 0.206 0.794 33 H 0.174 0.826 34 H 0.123 0.877 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.698 -21.716 -4.608 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.223 4.223 3 Si 0.836 3.164 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.484 4.484 8 H 0.118 0.882 9 O -0.146 6.146 10 C 0.029 3.971 11 C -0.217 4.217 12 C -0.143 4.143 13 C 0.045 3.955 14 N -0.338 5.338 15 C 0.052 3.948 16 C -0.058 4.058 17 N -0.177 5.177 18 C -0.051 4.051 19 C -0.134 4.134 20 C -0.169 4.169 21 C 0.453 3.547 22 F -0.157 7.157 23 F -0.157 7.157 24 F -0.158 7.158 25 C -0.140 4.140 26 C -0.180 4.180 27 H 0.079 0.921 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.262 0.738 31 H 0.197 0.803 32 H 0.222 0.778 33 H 0.192 0.808 34 H 0.141 0.859 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.991 -22.190 -3.982 24.659 hybrid contribution 0.582 1.919 -0.876 2.188 sum 10.573 -20.271 -4.858 23.373 Atomic orbital electron populations 1.70202 1.07989 1.28499 1.49752 1.26531 0.96822 1.02642 0.96303 0.84618 0.77892 0.74821 0.79086 1.19085 1.19771 1.17499 1.21780 0.92439 0.81608 1.52574 0.88168 1.83939 1.35670 1.12374 1.82649 1.19736 0.91548 0.87894 0.97909 1.21055 0.92793 0.99514 1.08311 1.20498 1.00008 0.89566 1.04247 1.17290 0.90061 0.85882 1.02220 1.41414 1.09900 1.02547 1.79910 1.18261 0.96957 0.88721 0.90823 1.23538 0.93315 0.88492 1.00421 1.67805 1.09724 1.18185 1.22018 1.23485 0.95058 1.00347 0.86256 1.22374 0.95689 0.91275 1.04109 1.21173 1.05524 0.96863 0.93350 1.18259 0.74769 0.80372 0.81252 1.93166 1.90790 1.86398 1.45334 1.93195 1.30854 1.95054 1.96603 1.93329 1.80297 1.47881 1.94315 1.20209 0.92075 0.96685 1.05028 1.20135 0.99529 0.90225 1.08133 0.92092 0.85862 0.83624 0.73826 0.80304 0.77770 0.80846 0.85906 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.67 21.61 0.30 -57.56 16 2 C -0.03 -1.53 5.49 84.82 0.47 -1.06 16 3 Si 1.02 43.55 29.55 68.60 2.03 45.57 16 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.41 -24.02 9.48 67.91 0.64 -23.38 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 9 O -0.24 -14.60 9.75 -22.95 -0.22 -14.82 16 10 C 0.08 3.98 6.65 22.60 0.15 4.13 16 11 C -0.20 -8.50 9.16 22.37 0.20 -8.29 16 12 C -0.12 -4.07 9.90 22.39 0.22 -3.85 16 13 C 0.14 4.36 5.04 38.23 0.19 4.56 16 14 N -0.70 -15.63 4.65 -180.08 -0.84 -16.46 16 15 C 0.15 3.03 4.33 38.31 0.17 3.20 16 16 C 0.10 1.82 11.13 84.88 0.94 2.77 16 17 N -0.47 -8.11 10.35 -195.27 -2.02 -10.13 16 18 C 0.11 1.31 11.17 84.68 0.95 2.26 16 19 C -0.11 -1.60 9.50 22.34 0.21 -1.39 16 20 C -0.16 -3.18 5.41 -19.54 -0.11 -3.28 16 21 C 0.51 12.28 3.00 71.24 0.21 12.50 16 22 F -0.18 -3.87 16.08 44.97 0.72 -3.15 16 23 F -0.18 -4.29 16.96 44.97 0.76 -3.53 16 24 F -0.18 -5.57 14.21 44.97 0.64 -4.93 16 25 C -0.12 -4.12 8.07 22.39 0.18 -3.94 16 26 C -0.16 -7.01 9.98 22.38 0.22 -6.79 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.42 7.45 8.85 -92.71 -0.82 6.63 16 31 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 32 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.17 1.60 7.26 -2.91 -0.02 1.58 16 34 H 0.12 3.80 7.03 -2.91 -0.02 3.78 16 35 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -74.22 319.40 6.39 -67.83 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.36 Total: 19.77 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.66 Total: -22.58 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.56 Total: -84.15 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.22 Total: -14.82 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 2.13 Total: -11.61 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -74.22 6.39 -67.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605164.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.950 kcal (2) G-P(sol) polarization free energy of solvation -74.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds